jgi.p|Nanoce1779_2|298694, mRNA_2270 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|298694
Unique Name	mRNA_2270
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2902
Alignment location	scaffold_4:1233160..1236061 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	298780
Track	FilteredModels2
ProteinId	298694

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1233160..1236061 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298694	gene_2270	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298694	mRNA_2270-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2270	CDS_2270	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1233160..1236061-
coding sequence from alignment at scaffold_4:1233160..1236061-

mRNA sequence

>mRNA_2270 ID=mRNA_2270|Name=jgi.p|Nanoce1779_2|298694|organism=Nannochloropsis oceanica|type=mRNA|length=2902bp
TTTCGCAACAAGTCCATAGCTGCTTCGCAAATTGCCAACGAATCCTTGGT
TTAGCTTCACATACTCAGGATATTCATGTGCACGTGGTCATCTTGTTGTC
TTCGGCCTCACCCATCAGAACTCTTATTTCCTTTAATCCTCCTCCTTCCC
ACATTTCCACAGCTGTCGGGCTTTCACCTGCAACAGCAACAACACGTACG
TGCATCTTTGCCCATTCCGCTATCCTACGACTGAAGAGCGCCCCAAGACC
ACAACCCCTAGCGGATGAGAATGGCGGAGAGGCTTTGCAACATTCAGTTC
CCCAACCATCTTCTGCAGCAGCAGGAGGAGCTGCAAGAGCGATGCATAAT
TTGCTTGGACCCCCAGGAAAGTGCTACTGCTACTGGATCCACCCCGAACT
ACCAGCAATGCCCCATCGGTGGTCATATTGTCTGCCACAAAACATGCCTG
GACTCCCTGGTGTTGTTTAATGTCTCACCTGAGCGCTTGCGGGCCTATCA
TGGTGAGATTCCTTGCCCCTGGGTGAACGCGGAGCAAGGGAGGCAGCTGT
GCCCCCAGCGTTGGCATTATCGAGAGTTGGCAACGCATTTGTCACCAGAC
GTGCAGCTCCGGTACGTGGAGGGGGTCACGACGTTCATGCGCACCTTGCT
TGGAGAAAAATATTATCCGAATCGCCATCATCTCACCGAAGAAGCGGTGC
AGTGGCAACACCAGAAAAGAGAAGATCCGCTTGTGGAAGCCGCAGCAGCA
CACATCGTGAGCGACCTACTCAGCCTCCATTGTCCTTCATGCGCGACTGT
CTTTGCCGACTTTGATGCTTGCTGTGCAGTCACATGTGGGGCGTGCGGAA
CACATTTCTGCGGTCTCTGTCTGGACCAACCGGGGGGGGAGGGCGCGAGG
GAGGGAGGGCGCAAGGGAGGGAGGGAGGGAGGGAGAAGCTTGAAGGAGCA
GGCGCACGCGCATGTCATTGGTGTACATGGGCAATTATTCTTCCAAGAGG
ATGAGATCTTGAGGCAACAGAATATTTTTCGGATGAGGCGGATCGTGGAA
TATTTGCTGGAGGTCACCACAACCCCTTCCTCCGTCCCTCCCTCCGTTCC
TCCATCTCTCGCTCCTGATACCAGCAGCAGCAGCACCACCACCACCAGCT
GCACAACTTACTCTCGAGAAGAAAGAAAAAAAGGGAAGCAAGAAGAGGAG
AGTAAGGCCCTACAGTTTGTGGCACAGGCCTTGACAAAGGTCGCTAAGGA
GTGTGCGGCCTTGGAGATGGACGTACGAGAGATTGAGAGGATCTTTTATC
GATATCGCCAACACCAGGCAAGGGGAGATGACCAGGAGGGGGAGGAAGGG
ATGATAGTATTTAGGCCTCGGCGTCCAAGTCGTCTGCGATTTGAGGATCT
TATGGGGGAGGGAGAGAGGGAGGGAAGGCTTGTCTTCCGGGAGGCAACAC
CCATTTTACGGTTGGCAGGTGGGGAGAAGATGAATGTTACTGTTGTTGCT
CCTGCTGCTACTGCTGTAACCTTATCTAGTGCAGCTGTCCTTCTTGCTGC
TACTACTGCTGATGGTAGCGCGCCAGCGGGCCCTGCTGCTGCTGCTGCTG
CTACTGCTTGTACTTCTCCTACTGTGATGGCCCTTATCTCAGCATCGGCG
GCTGCTGCTGCTGGCTTTTCAGGGCCTGCAGGACATAGTTATGCAGTAGA
GGGGGAAGGGATGAGGGAGGGAGGAAAGGAGGAAGGGAAGGGCATGGATG
AGGTGAACAGAAGGACGGACGAAGGGGAAGAGGAGGAGGAGGAGGAGCAT
GGGCATCGCCATCGTCGTCGGCGGACGTTCAGCTTCCAATCCGAATGCCC
GGATTCGATCTCTACGAATGGTTGGAGTGCTTTCTCCTCCTTCTCTTCCT
CCCTTTCTTCCTCGCCCTTGTCTTCGCCTCTGCCACATTCTCTTTGGCCT
GAGCGAGTCATGGAGGATGTGGAGGAGGAGAAGGAAGAGATAATGGACGA
GGAGGAAAATAAAGAGGCGAAAGAGCAGCAGATCGTCGAAGGCGAGGATG
AGAAGTATGAGGATGACGAGGACGAGGAGGAGGAGGAAGAGGAGAAGGAG
GAGGAGTCTTACTTCTATGAGGAAGAGGGCGGCATCTCTCTGATGCAACA
CAGGGTAGGAAGAGGGAGGGAGATAGAGAAGGGGGAAGACTTGAGCTTCT
CTGTGTCTAAACAAGAGGAAGGGATGGATGTAGTGGTTAGAACCAGTGAG
GAAAAGGAGGAAGAGACAGAGAGTAAGGGCGTGGCGGCGAATTATTTCAC
TTTTTGAGCCTCTCTTGCCAATTGGCCGACGGCGCCATCGACAGCCGAAT
GCGGAAGAGAGAGAGGCATAGAGGAAGAGATAGAGGATGTATACATATAT
ACACATATGTATATTTTCATCTGCCAGAATTCTGTCCTTGACGTGGACAA
ACTTTTGTTAAGGGAAGAGTGAGTGCACGACAGACGAATGATTGCACTTT
CCCACGACGGAACCAACTTCATATCGGAAGATATAATTAACCGAATATTT
AGTGGAGAGACGATTTTCTGAAGAAGGAAACAGGCTATATGGAGGGGAGT
AAAGCGAATGATATGTCAGGTAAAGTTAAGCGAGTAAATGGTGGTCGGAG
CGCAAGGCTTGAGTGGAGTATAAGAGGATTAAGAAAAATATAAGTGCTAG
CTAGAGGAGCGAAAAGCGAACATGAAAATTAATTATGATAGCGAGTGAGA
GGTGGTTGGAGCGTAGATCTTAAAAAGAGTGTAGGAGGTGAAATAGTGGC
CCAAGCTAGATGGATAAAATGCAGACATAATCATAGATAGTGGAGGAAGT
AGGTCGAGTACAGACACGCCTCACAAAGAAAAAAGAGTAGATATACATTT
AA

protein sequence of jgi.p|Nanoce1779_2|298694

>mRNA_2270-protein ID=mRNA_2270-protein|Name=jgi.p|Nanoce1779_2|298694|organism=Nannochloropsis oceanica|type=polypeptide|length=681bp
MRMAERLCNIQFPNHLLQQQEELQERCIICLDPQESATATGSTPNYQQCP
IGGHIVCHKTCLDSLVLFNVSPERLRAYHGEIPCPWVNAEQGRQLCPQRW
HYRELATHLSPDVQLRYVEGVTTFMRTLLGEKYYPNRHHLTEEAVQWQHQ
KREDPLVEAAAAHIVSDLLSLHCPSCATVFADFDACCAVTCGACGTHFCG
LCLDQPGGEGAREGGRKGGREGGRSLKEQAHAHVIGVHGQLFFQEDEILR
QQNIFRMRRIVEYLLEVTTTPSSVPPSVPPSLAPDTSSSSTTTTSCTTYS
REERKKGKQEEESKALQFVAQALTKVAKECAALEMDVREIERIFYRYRQH
QARGDDQEGEEGMIVFRPRRPSRLRFEDLMGEGEREGRLVFREATPILRL
AGGEKMNVTVVAPAATAVTLSSAAVLLAATTADGSAPAGPAAAAAATACT
SPTVMALISASAAAAAGFSGPAGHSYAVEGEGMREGGKEEGKGMDEVNRR
TDEGEEEEEEEHGHRHRRRRTFSFQSECPDSISTNGWSAFSSFSSSLSSS
PLSSPLPHSLWPERVMEDVEEEKEEIMDEEENKEAKEQQIVEGEDEKYED
DEDEEEEEEEKEEESYFYEEEGGISLMQHRVGRGREIEKGEDLSFSVSKQ
EEGMDVVVRTSEEKEEETESKGVAANYFTF*

mRNA from alignment at scaffold_4:1233160..1236061-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2270 ID=mRNA_2270|Name=jgi.p|Nanoce1779_2|298694|organism=Nannochloropsis oceanica|type=mRNA|length=2902bp|location=Sequence derived from alignment at scaffold_4:1233160..1236061- (Nannochloropsis oceanica)
TTTCGCAACAAGTCCATAGCTGCTTCGCAAATTGCCAACGAATCCTTGGT
TTAGCTTCACATACTCAGGATATTCATGTGCACGTGGTCATCTTGTTGTC
TTCGGCCTCACCCATCAGAACTCTTATTTCCTTTAATCCTCCTCCTTCCC
ACATTTCCACAGCTGTCGGGCTTTCACCTGCAACAGCAACAACACGTACG
TGCATCTTTGCCCATTCCGCTATCCTACGACTGAAGAGCGCCCCAAGACC
ACAACCCCTAGCGGATGAGAATGGCGGAGAGGCTTTGCAACATTCAGTTC
CCCAACCATCTTCTGCAGCAGCAGGAGGAGCTGCAAGAGCGATGCATAAT
TTGCTTGGACCCCCAGGAAAGTGCTACTGCTACTGGATCCACCCCGAACT
ACCAGCAATGCCCCATCGGTGGTCATATTGTCTGCCACAAAACATGCCTG
GACTCCCTGGTGTTGTTTAATGTCTCACCTGAGCGCTTGCGGGCCTATCA
TGGTGAGATTCCTTGCCCCTGGGTGAACGCGGAGCAAGGGAGGCAGCTGT
GCCCCCAGCGTTGGCATTATCGAGAGTTGGCAACGCATTTGTCACCAGAC
GTGCAGCTCCGGTACGTGGAGGGGGTCACGACGTTCATGCGCACCTTGCT
TGGAGAAAAATATTATCCGAATCGCCATCATCTCACCGAAGAAGCGGTGC
AGTGGCAACACCAGAAAAGAGAAGATCCGCTTGTGGAAGCCGCAGCAGCA
CACATCGTGAGCGACCTACTCAGCCTCCATTGTCCTTCATGCGCGACTGT
CTTTGCCGACTTTGATGCTTGCTGTGCAGTCACATGTGGGGCGTGCGGAA
CACATTTCTGCGGTCTCTGTCTGGACCAACCGGGGGGGGAGGGCGCGAGG
GAGGGAGGGCGCAAGGGAGGGAGGGAGGGAGGGAGAAGCTTGAAGGAGCA
GGCGCACGCGCATGTCATTGGTGTACATGGGCAATTATTCTTCCAAGAGG
ATGAGATCTTGAGGCAACAGAATATTTTTCGGATGAGGCGGATCGTGGAA
TATTTGCTGGAGGTCACCACAACCCCTTCCTCCGTCCCTCCCTCCGTTCC
TCCATCTCTCGCTCCTGATACCAGCAGCAGCAGCACCACCACCACCAGCT
GCACAACTTACTCTCGAGAAGAAAGAAAAAAAGGGAAGCAAGAAGAGGAG
AGTAAGGCCCTACAGTTTGTGGCACAGGCCTTGACAAAGGTCGCTAAGGA
GTGTGCGGCCTTGGAGATGGACGTACGAGAGATTGAGAGGATCTTTTATC
GATATCGCCAACACCAGGCAAGGGGAGATGACCAGGAGGGGGAGGAAGGG
ATGATAGTATTTAGGCCTCGGCGTCCAAGTCGTCTGCGATTTGAGGATCT
TATGGGGGAGGGAGAGAGGGAGGGAAGGCTTGTCTTCCGGGAGGCAACAC
CCATTTTACGGTTGGCAGGTGGGGAGAAGATGAATGTTACTGTTGTTGCT
CCTGCTGCTACTGCTGTAACCTTATCTAGTGCAGCTGTCCTTCTTGCTGC
TACTACTGCTGATGGTAGCGCGCCAGCGGGCCCTGCTGCTGCTGCTGCTG
CTACTGCTTGTACTTCTCCTACTGTGATGGCCCTTATCTCAGCATCGGCG
GCTGCTGCTGCTGGCTTTTCAGGGCCTGCAGGACATAGTTATGCAGTAGA
GGGGGAAGGGATGAGGGAGGGAGGAAAGGAGGAAGGGAAGGGCATGGATG
AGGTGAACAGAAGGACGGACGAAGGGGAAGAGGAGGAGGAGGAGGAGCAT
GGGCATCGCCATCGTCGTCGGCGGACGTTCAGCTTCCAATCCGAATGCCC
GGATTCGATCTCTACGAATGGTTGGAGTGCTTTCTCCTCCTTCTCTTCCT
CCCTTTCTTCCTCGCCCTTGTCTTCGCCTCTGCCACATTCTCTTTGGCCT
GAGCGAGTCATGGAGGATGTGGAGGAGGAGAAGGAAGAGATAATGGACGA
GGAGGAAAATAAAGAGGCGAAAGAGCAGCAGATCGTCGAAGGCGAGGATG
AGAAGTATGAGGATGACGAGGACGAGGAGGAGGAGGAAGAGGAGAAGGAG
GAGGAGTCTTACTTCTATGAGGAAGAGGGCGGCATCTCTCTGATGCAACA
CAGGGTAGGAAGAGGGAGGGAGATAGAGAAGGGGGAAGACTTGAGCTTCT
CTGTGTCTAAACAAGAGGAAGGGATGGATGTAGTGGTTAGAACCAGTGAG
GAAAAGGAGGAAGAGACAGAGAGTAAGGGCGTGGCGGCGAATTATTTCAC
TTTTTGAGCCTCTCTTGCCAATTGGCCGACGGCGCCATCGACAGCCGAAT
GCGGAAGAGAGAGAGGCATAGAGGAAGAGATAGAGGATGTATACATATAT
ACACATATGTATATTTTCATCTGCCAGAATTCTGTCCTTGACGTGGACAA
ACTTTTGTTAAGGGAAGAGTGAGTGCACGACAGACGAATGATTGCACTTT
CCCACGACGGAACCAACTTCATATCGGAAGATATAATTAACCGAATATTT
AGTGGAGAGACGATTTTCTGAAGAAGGAAACAGGCTATATGGAGGGGAGT
AAAGCGAATGATATGTCAGGTAAAGTTAAGCGAGTAAATGGTGGTCGGAG
CGCAAGGCTTGAGTGGAGTATAAGAGGATTAAGAAAAATATAAGTGCTAG
CTAGAGGAGCGAAAAGCGAACATGAAAATTAATTATGATAGCGAGTGAGA
GGTGGTTGGAGCGTAGATCTTAAAAAGAGTGTAGGAGGTGAAATAGTGGC
CCAAGCTAGATGGATAAAATGCAGACATAATCATAGATAGTGGAGGAAGT
AGGTCGAGTACAGACACGCCTCACAAAGAAAAAAGAGTAGATATACATTT
AA

Coding sequence (CDS) from alignment at scaffold_4:1233160..1236061-

>mRNA_2270 ID=mRNA_2270|Name=jgi.p|Nanoce1779_2|298694|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_4:1233160..1236061- (Nannochloropsis oceanica)
ATGAGAATGGCGGAGAGGCTTTGCAACATTCAGTTCCCCAACCATCTTCT
GCAGCAGCAGGAGGAGCTGCAAGAGCGATGCATAATTTGCTTGGACCCCC
AGGAAAGTGCTACTGCTACTGGATCCACCCCGAACTACCAGCAATGCCCC
ATCGGTGGTCATATTGTCTGCCACAAAACATGCCTGGACTCCCTGGTGTT
GTTTAATGTCTCACCTGAGCGCTTGCGGGCCTATCATGGTGAGATTCCTT
GCCCCTGGGTGAACGCGGAGCAAGGGAGGCAGCTGTGCCCCCAGCGTTGG
CATTATCGAGAGTTGGCAACGCATTTGTCACCAGACGTGCAGCTCCGGTA
CGTGGAGGGGGTCACGACGTTCATGCGCACCTTGCTTGGAGAAAAATATT
ATCCGAATCGCCATCATCTCACCGAAGAAGCGGTGCAGTGGCAACACCAG
AAAAGAGAAGATCCGCTTGTGGAAGCCGCAGCAGCACACATCGTGAGCGA
CCTACTCAGCCTCCATTGTCCTTCATGCGCGACTGTCTTTGCCGACTTTG
ATGCTTGCTGTGCAGTCACATGTGGGGCGTGCGGAACACATTTCTGCGGT
CTCTGTCTGGACCAACCGGGGGGGGAGGGCGCGAGGGAGGGAGGGCGCAA
GGGAGGGAGGGAGGGAGGGAGAAGCTTGAAGGAGCAGGCGCACGCGCATG
TCATTGGTGTACATGGGCAATTATTCTTCCAAGAGGATGAGATCTTGAGG
CAACAGAATATTTTTCGGATGAGGCGGATCGTGGAATATTTGCTGGAGGT
CACCACAACCCCTTCCTCCGTCCCTCCCTCCGTTCCTCCATCTCTCGCTC
CTGATACCAGCAGCAGCAGCACCACCACCACCAGCTGCACAACTTACTCT
CGAGAAGAAAGAAAAAAAGGGAAGCAAGAAGAGGAGAGTAAGGCCCTACA
GTTTGTGGCACAGGCCTTGACAAAGGTCGCTAAGGAGTGTGCGGCCTTGG
AGATGGACGTACGAGAGATTGAGAGGATCTTTTATCGATATCGCCAACAC
CAGGCAAGGGGAGATGACCAGGAGGGGGAGGAAGGGATGATAGTATTTAG
GCCTCGGCGTCCAAGTCGTCTGCGATTTGAGGATCTTATGGGGGAGGGAG
AGAGGGAGGGAAGGCTTGTCTTCCGGGAGGCAACACCCATTTTACGGTTG
GCAGGTGGGGAGAAGATGAATGTTACTGTTGTTGCTCCTGCTGCTACTGC
TGTAACCTTATCTAGTGCAGCTGTCCTTCTTGCTGCTACTACTGCTGATG
GTAGCGCGCCAGCGGGCCCTGCTGCTGCTGCTGCTGCTACTGCTTGTACT
TCTCCTACTGTGATGGCCCTTATCTCAGCATCGGCGGCTGCTGCTGCTGG
CTTTTCAGGGCCTGCAGGACATAGTTATGCAGTAGAGGGGGAAGGGATGA
GGGAGGGAGGAAAGGAGGAAGGGAAGGGCATGGATGAGGTGAACAGAAGG
ACGGACGAAGGGGAAGAGGAGGAGGAGGAGGAGCATGGGCATCGCCATCG
TCGTCGGCGGACGTTCAGCTTCCAATCCGAATGCCCGGATTCGATCTCTA
CGAATGGTTGGAGTGCTTTCTCCTCCTTCTCTTCCTCCCTTTCTTCCTCG
CCCTTGTCTTCGCCTCTGCCACATTCTCTTTGGCCTGAGCGAGTCATGGA
GGATGTGGAGGAGGAGAAGGAAGAGATAATGGACGAGGAGGAAAATAAAG
AGGCGAAAGAGCAGCAGATCGTCGAAGGCGAGGATGAGAAGTATGAGGAT
GACGAGGACGAGGAGGAGGAGGAAGAGGAGAAGGAGGAGGAGTCTTACTT
CTATGAGGAAGAGGGCGGCATCTCTCTGATGCAACACAGGGTAGGAAGAG
GGAGGGAGATAGAGAAGGGGGAAGACTTGAGCTTCTCTGTGTCTAAACAA
GAGGAAGGGATGGATGTAGTGGTTAGAACCAGTGAGGAAAAGGAGGAAGA
GACAGAGAGTAAGGGCGTGGCGGCGAATTATTTCACTTTTTGA

Synonyms

Publications