jgi.p|Nanoce1779_2|628381, mRNA_2265 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628381
Unique Name	mRNA_2265
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1544
Alignment location	scaffold_4:1216392..1218316 -

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Properties


Property Name	Value
TranscriptId	628467
Track	FilteredModels2
ProteinId	628381

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1216392..1218316 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628381	gene_2265	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628381	mRNA_2265-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2265	CDS_2265	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1216392..1218316-
coding sequence from alignment at scaffold_4:1216392..1218316-

mRNA sequence

>mRNA_2265 ID=mRNA_2265|Name=jgi.p|Nanoce1779_2|628381|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
CAGACTACATCCACAGGCAACCACGCACCACCATGGTTACCGTGACAACA
GTCGATGAGAACGAAGACGGACTCGACTTGATCCTCCGCGAGCTCGCCCT
CCAACCTCCATCAACAGCATCCACGACAGCACCACCGCGCACGACCACAA
CAAGCATGACGACAATAACCATAGCGACAACGAAGGATCGCGAAAGCATA
CGAACCAGAGGGGACTGGAACGATCGGGAACAAGACTCTGTAGACAGAGA
GGCTTGGCCACGGGGATCCGAAATTGATGAGACCCGTACCCTTTATTTTC
AAGGACAGCTCCGAGAATACATTCAGGACATGGCAGATTCCTTCATTTTG
CAGGAAATCGAAGCTCATCTGGCCGATAAGCCGTACAAGGAGCTTGCGAG
CTACTATGAGGGCAAATCTGAGATGGCGAAGTACACCCTGGACCATGAGG
TGGGGCGAATGGCGTACCGAGTCATTGACAGCATGGCGACGGGAAATGGG
GGGGCCGTGGCTGCTGATTGTGGTTTTGGTGCTCTCGAGAGTGACTGCTG
CAGCCGCAGCTCTGTAGCCATCACTCCCAGACTTTCACTGTCCCCTCCTC
TTCTCCTTGCCGAGAATGACCCCCCCTCCATCCGCGCCGCCTACGCCATG
CACCCGCATCTCTTTTCCTGGCGCTTAGCCAATCAAAGCCTTTTCGCTGA
GCTCCTTCAAGAAATACAATTCAGTTTTATTAGAGCTGATTTAGAGGTAG
GCGTTGTAAGTAAAAACTCTCAATTCGTGCTCGACGTGGGAAGGGATAGG
TTGAAGGGAGTATCGATGTTTTATGTCTTGCTAGCGGCAGCAGAAGAGGG
ACCTGTGGAGGTGGCGAGGATTGAAGGGGTGGTGTCCGTTGATGTGCAAA
AAGAGTGCTGGACGCACAAATTAAGGCTCGTGAAGCTTCAGCCTGTCTTT
GACGATGTCTTGAGGAAAGTGGCAGAGGCCCTAGCAAGGCATGAGGGAGA
TGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAGGAAGATGGTGGGGGGGAA
CGCCGCGAGTGCCATTGGCATTTGACGGCTTGAGGGAGGCAGGGCAGGGG
TTGTTGCAGGCAGTGACAACAGTGGGTAGGATGATTGAAGACGCGGCGAT
AGCTGCTGATGAGGAGGAGGGAGGGAGGGAGGAAAGGAGGGAAGACGGGA
AGAGAGGCAATGAGAAGCTCCTAAAAACGTCCGGGACGCGGACCCACCCC
AAGTGGGGGAATGGAACAGGGATGGATGCTGTAGAGGGAGGGAAGGAGGA
GGGAAGGGAGAAAGGGGCCAGTGAATTTCTGAGCGGATGGCCTGATTTGA
TATGGGCGGAGGGGAAGTCCCCTAGGCCGCCCTCCGGGTACTTGAAGGGG
TTCATGACGGGAGTGGGAGGCTTCATTGTGAGGGGAGTGGAGGCCGCGAT
GACCGAGGATGAGGGAGGGAGGGAGGGAAGGAGGAAGAGTGAGTTGGGGC
TAGGTGAGCTCTTGCGACGACGGGACGCAGCGGAAAGGGAGTGA

protein sequence of jgi.p|Nanoce1779_2|628381

>mRNA_2265-protein ID=mRNA_2265-protein|Name=jgi.p|Nanoce1779_2|628381|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MVTVTTVDENEDGLDLILRELALQPPSTASTTAPPRTTTTSMTTITIATT
KDRESIRTRGDWNDREQDSVDREAWPRGSEIDETRTLYFQGQLREYIQDM
ADSFILQEIEAHLADKPYKELASYYEGKSEMAKYTLDHEVGRMAYRVIDS
MATGNGGAVAADCGFGALESDCCSRSSVAITPRLSLSPPLLLAENDPPSI
RAAYAMHPHLFSWRLANQSLFAELLQEIQFSFIRADLEVGVVSKNSQFVL
DVGRDRLKGVSMFYVLLAAAEEGPVEVARIEGVVSVDVQKECWTHKLRLV
KLQPVFDDVLRKVAEALARHEGDGRGREGGREGGRWWGGTPRVPLAFDGL
REAGQGLLQAVTTVGRMIEDAAIAADEEEGGREERREDGKRGNEKLLKTS
GTRTHPKWGNGTGMDAVEGGKEEGREKGASEFLSGWPDLIWAEGKSPRPP
SGYLKGFMTGVGGFIVRGVEAAMTEDEGGREGRRKSELGLGELLRRRDAA
ERE*

mRNA from alignment at scaffold_4:1216392..1218316-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2265 ID=mRNA_2265|Name=jgi.p|Nanoce1779_2|628381|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at scaffold_4:1216392..1218316- (Nannochloropsis oceanica)
CAGACTACATCCACAGGCAACCACGCACCACCATGGTTACCGTGACAACA
GTCGATGAGAACGAAGACGGACTCGACTTGATCCTCCGCGAGCTCGCCCT
CCAACCTCCATCAACAGCATCCACGACAGCACCACCGCGCACGACCACAA
CAAGCATGACGACAATAACCATAGCGACAACGAAGGATCGCGAAAGCATA
CGAACCAGAGGGGACTGGAACGATCGGGAACAAGACTCTGTAGACAGAGA
GGCTTGGCCACGGGGATCCGAAATTGATGAGACCCGTACCCTTTATTTTC
AAGGACAGCTCCGAGAATACATTCAGGACATGGCAGATTCCTTCATTTTG
CAGGAAATCGAAGCTCATCTGGCCGATAAGCCGTACAAGGAGCTTGCGAG
CTACTATGAGGGCAAATCTGAGATGGCGAAGTACACCCTGGACCATGAGG
TGGGGCGAATGGCGTACCGAGTCATTGACAGCATGGCGACGGGAAATGGG
GGGGCCGTGGCTGCTGATTGTGGTTTTGGTGCTCTCGAGAGTGACTGCTG
CAGCCGCAGCTCTGTAGCCATCACTCCCAGACTTTCACTGTCCCCTCCTC
TTCTCCTTGCCGAGAATGACCCCCCCTCCATCCGCGCCGCCTACGCCATG
CACCCGCATCTCTTTTCCTGGCGCTTAGCCAATCAAAGCCTTTTCGCTGA
GCTCCTTCAAGAAATACAATTCAGTTTTATTAGAGCTGATTTAGAGGTAG
GCGTTGTAAGTAAAAACTCTCAATTCGTGCTCGACGTGGGAAGGGATAGG
TTGAAGGGAGTATCGATGTTTTATGTCTTGCTAGCGGCAGCAGAAGAGGG
ACCTGTGGAGGTGGCGAGGATTGAAGGGGTGGTGTCCGTTGATGTGCAAA
AAGAGTGCTGGACGCACAAATTAAGGCTCGTGAAGCTTCAGCCTGTCTTT
GACGATGTCTTGAGGAAAGTGGCAGAGGCCCTAGCAAGGCATGAGGGAGA
TGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAGGAAGATGGTGGGGGGGAA
CGCCGCGAGTGCCATTGGCATTTGACGGCTTGAGGGAGGCAGGGCAGGGG
TTGTTGCAGGCAGTGACAACAGTGGGTAGGATGATTGAAGACGCGGCGAT
AGCTGCTGATGAGGAGGAGGGAGGGAGGGAGGAAAGGAGGGAAGACGGGA
AGAGAGGCAATGAGAAGCTCCTAAAAACGTCCGGGACGCGGACCCACCCC
AAGTGGGGGAATGGAACAGGGATGGATGCTGTAGAGGGAGGGAAGGAGGA
GGGAAGGGAGAAAGGGGCCAGTGAATTTCTGAGCGGATGGCCTGATTTGA
TATGGGCGGAGGGGAAGTCCCCTAGTCCTACTTTTACTGTTCCTGCTGCT
GCTGCTACGCCACTCGACGTTTCGGATGCGGCTGCTGCAGCATGGTCTGG
TGTAGAGGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGTAGGAGGGAGAGGAGGGGGAGGC
CTATGGCGGTTCTTGCAATACAGCGGAGACATGCAGCCAGCACATCCCTC
CTCTTCCAAGTTACACCAGCAGGAGCACCAGGAACTCCAACGGCAACAGC
AGCAGCAGGAGGTGCAGCAGGAGGCGCAGCAGGAGCAGCAGCAGGAGGAG
GGGGAGGAGGAGCAGCAGGAGGAGGACGAGGACAGACCGTCGTTATTCTT
GGGAGGGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGAGTGGGAG
GCTTCATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGAGGGAGGG
AGGGAGGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCTTGCGACG
ACGGGACGCAGCGGAAAGGGAGTGA

Coding sequence (CDS) from alignment at scaffold_4:1216392..1218316-

>mRNA_2265 ID=mRNA_2265|Name=jgi.p|Nanoce1779_2|628381|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_4:1216392..1218316- (Nannochloropsis oceanica)
GGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGAGTGGGAGGCTTC
ATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGAGGGAGGGAGGGA
GGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCTTGCGACGACGGG
ACGCAGCGGAAAGGGAGTGAATGGTTACCGTGACAACAGTCGATGAGAAC
GAAGACGGACTCGACTTGATCCTCCGCGAGCTCGCCCTCCAACCTCCATC
AACAGCATCCACGACAGCACCACCGCGCACGACCACAACAAGCATGACGA
CAATAACCATAGCGACAACGAAGGATCGCGAAAGCATACGAACCAGAGGG
GACTGGAACGATCGGGAACAAGACTCTGTAGACAGAGAGGCTTGGCCACG
GGGATCCGAAATTGATGAGACCCGTACCCTTTATTTTCAAGGACAGCTCC
GAGAATACATTCAGGACATGGCAGATTCCTTCATTTTGCAGGAAATCGAA
GCTCATCTGGCCGATAAGCCGTACAAGGAGCTTGCGAGCTACTATGAGGG
CAAATCTGAGATGGCGAAGTACACCCTGGACCATGAGGTGGGGCGAATGG
CGTACCGAGTCATTGACAGCATGGCGACGGGAAATGGGGGGGCCGTGGCT
GCTGATTGTGGTTTTGGTGCTCTCGAGAGTGACTGCTGCAGCCGCAGCTC
TGTAGCCATCACTCCCAGACTTTCACTGTCCCCTCCTCTTCTCCTTGCCG
AGAATGACCCCCCCTCCATCCGCGCCGCCTACGCCATGCACCCGCATCTC
TTTTCCTGGCGCTTAGCCAATCAAAGCCTTTTCGCTGAGCTCCTTCAAGA
AATACAATTCAGTTTTATTAGAGCTGATTTAGAGGTAGGCGTTGTAAGTA
AAAACTCTCAATTCGTGCTCGACGTGGGAAGGGATAGGTTGAAGGGAGTA
TCGATGTTTTATGTCTTGCTAGCGGCAGCAGAAGAGGGACCTGTGGAGGT
GGCGAGGATTGAAGGGGTGGTGTCCGTTGATGTGCAAAAAGAGTGCTGGA
CGCACAAATTAAGGCTCGTGAAGCTTCAGCCTGTCTTTGACGATGTCTTG
AGGAAAGTGGCAGAGGCCCTAGCAAGGCATGAGGGAGATGGGCGGGGGAG
GGAGGGTGGAAGGGAGGGAGGAAGATGGTGGGGGGGAACGCCGCGAGTGC
CATTGGCATTTGACGGCTTGAGGGAGGCAGGGCAGGGGTTGTTGCAGGCA
GTGACAACAGTGGGTAGGATGATTGAAGACGCGGCGATAGCTGCTGATGA
GGAGGAGGGAGGGAGGGAGGAAAGGAGGGAAGACGGGAAGAGAGGCAATG
AGAAGCTCCTAAAAACGTCCGGGACGCGGACCCACCCCAAGTGGGGGAAT
GGAACAGGGATGGATGCTGTAGAGGGAGGGAAGGAGGAGGGAAGGGAGAA
AGGGGCCAGTGAATTTCTGAGCGGATGGCCTGATTTGATATGGGCGGAGG
GGAAGTCCCCTAGGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGA
GTGGGAGGCTTCATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGA
GGGAGGGAGGGAGGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCT
TGCGACGACGGGACGCAGCGGAAAGGGAGTGAATGGTTACCGTGACAACA
GTCGATGAGAACGAAGACGGACTCGACTTGATCCTCCGCGAGCTCGCCCT
CCAACCTCCATCAACAGCATCCACGACAGCACCACCGCGCACGACCACAA
CAAGCATGACGACAATAACCATAGCGACAACGAAGGATCGCGAAAGCATA
CGAACCAGAGGGGACTGGAACGATCGGGAACAAGACTCTGTAGACAGAGA
GGCTTGGCCACGGGGATCCGAAATTGATGAGACCCGTACCCTTTATTTTC
AAGGACAGCTCCGAGAATACATTCAGGACATGGCAGATTCCTTCATTTTG
CAGGAAATCGAAGCTCATCTGGCCGATAAGCCGTACAAGGAGCTTGCGAG
CTACTATGAGGGCAAATCTGAGATGGCGAAGTACACCCTGGACCATGAGG
TGGGGCGAATGGCGTACCGAGTCATTGACAGCATGGCGACGGGAAATGGG
GGGGCCGTGGCTGCTGATTGTGGTTTTGGTGCTCTCGAGAGTGACTGCTG
CAGCCGCAGCTCTGTAGCCATCACTCCCAGACTTTCACTGTCCCCTCCTC
TTCTCCTTGCCGAGAATGACCCCCCCTCCATCCGCGCCGCCTACGCCATG
CACCCGCATCTCTTTTCCTGGCGCTTAGCCAATCAAAGCCTTTTCGCTGA
GCTCCTTCAAGAAATACAATTCAGTTTTATTAGAGCTGATTTAGAGGTAG
GCGTTGTAAGTAAAAACTCTCAATTCGTGCTCGACGTGGGAAGGGATAGG
TTGAAGGGAGTATCGATGTTTTATGTCTTGCTAGCGGCAGCAGAAGAGGG
ACCTGTGGAGGTGGCGAGGATTGAAGGGGTGGTGTCCGTTGATGTGCAAA
AAGAGTGCTGGACGCACAAATTAAGGCTCGTGAAGCTTCAGCCTGTCTTT
GACGATGTCTTGAGGAAAGTGGCAGAGGCCCTAGCAAGGCATGAGGGAGA
TGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAGGAAGATGGTGGGGGGGAA
CGCCGCGAGTGCCATTGGCATTTGACGGCTTGAGGGAGGCAGGGCAGGGG
TTGTTGCAGGCAGTGACAACAGTGGGTAGGATGATTGAAGACGCGGCGAT
AGCTGCTGATGAGGAGGAGGGAGGGAGGGAGGAAAGGAGGGAAGACGGGA
AGAGAGGCAATGAGAAGCTCCTAAAAACGTCCGGGACGCGGACCCACCCC
AAGTGGGGGAATGGAACAGGGATGGATGCTGTAGAGGGAGGGAAGGAGGA
GGGAAGGGAGAAAGGGGCCAGTGAATTTCTGAGCGGATGGCCTGATTTGA
TATGGGCGGAGGGGAAGTCCCCTA

Synonyms

Publications