jgi.p|Nanoce1779_2|579668, mRNA_2264 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579668
Unique NamemRNA_2264
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1311
Alignment locationscaffold_4:1214323..1215789 +

Link to JBrowse

Properties
Property NameValue
TranscriptId579754
TrackFilteredModels2
ProteinId579668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1214323..1215789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579668gene_2264Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579668mRNA_2264-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2264CDS_2264Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2264 ID=mRNA_2264|Name=jgi.p|Nanoce1779_2|579668|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp
CAGGCTTCGATATTTGGAGCAGCCGGGACCATGCAGCAGTTCTATCGGTC
GGCGGCTAGAGCCGGAGGGGCGTGGCGGAGGGCACCAGCATCGTCATCAC
TAGCATCACATCCCCTCCTTCTCACAGCCGCCGCCTCCTCGCACGCCTCC
TTCCGGGTCGTCACGCCCTCCTTTTCAGCCTTCGCCTCCGCGAGAATAAA
TACTTCGACCATCACTGGCTCCTCCTCCCTCCCCATGCCTCCCTCTTCCT
CCTCTTCCTCCTCCTCCTCCTCCCCTCTCACCGAGCCCTCCACCACATAC
GGCGATGATCGTCGTCTCTACCCTCTCCCGCACAAGCGCTGTTCCGCCGC
CTCACTACCCCTGGACGTACAGCATTCAGATCGCTTTCTCGTCTCGCGGC
GCGGCCAAGCCCTTTATCAACAAACGTATCACCCACCGTCCTTGAACAAC
GAGACACTGAAAGGCGTAGTATTCATGGTGCACGATTACGGTGATCACTC
CTCCTGGTTCTTAAGGGATCTGGCCGTAGTACTTTGCCAGCAGGTTGGAG
AGAGAGAAAGAGGGGGGGGGGAGGGAATGGGGGGAGGATATTTTGAGATT
CTGTTGTTGGATCCATTTTTTGCCTCGTCTCATTTTCTTACCCTCTCTCC
TTCCCTCCCTTCATCCCTCCCTCCCTTCCCCCTTCTTTTGTAGGGCTATG
GCGTTGTATCAATCGATTTGGAGGGACACGGGCGCAGCGACGGTTTGCGC
GGTCAGCTGCACATAGCCCATGCCGTTGCCGACCTGTGCGATCAGTTTGG
CGCCCTCTCCCTCGGATACGCCGCCACGCCGTGCTTCCTCCTGGGGGAAG
GGCTAGGGGCGGCACTAGCCTACAAGACCTATCTGATGCAAGGGGGCAGG
TACTGGGACGGAGTGATCATGCTCTCCCCTACACTGGCGTTCCCACCGCG
ATTGAGACCTCCCAAATGGGTGATCAGTCTCCTGCGTCGCTTCGAGCATC
GGCTGGGCAAAGCGCCCCTCGTGCCCTGGGGTCAGCTCTACCTTGACCTC
CTCCCGGAGTCCGTCACTCGCCAAGAGGTCCTCGAGAACCCCTTTTTCAT
CAAGCAGCATGGCATGCGCGTCTCCACCCTCCTGCACACCCTGTCGACCT
TGGACGAGGTCTACCTCCACGCACCGACCCCCTCCTCCCTCGATCCCCCT
CCCCCGCCCTCCGTATGCACGTTTGAAGAGCTGACGGCACCGATCCTGAT
ATTGCAAGGGGAGGAGGATCAATTCCATGGAGGGAGGGGGGGAGGCAGGG
AGGGAGGGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|579668

>mRNA_2264-protein ID=mRNA_2264-protein|Name=jgi.p|Nanoce1779_2|579668|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MQQFYRSAARAGGAWRRAPASSSLASHPLLLTAAASSHASFRVVTPSFSA
FASARINTSTITGSSSLPMPPSSSSSSSSSSPLTEPSTTYGDDRRLYPLP
HKRCSAASLPLDVQHSDRFLVSRRGQALYQQTYHPPSLNNETLKGVVFMV
HDYGDHSSWFLRDLAVVLCQQVGERERGGGEGMGGGYFEILLLDPFFASS
HFLTLSPSLPSSLPPFPLLL*
back to top

mRNA from alignment at scaffold_4:1214323..1215789+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2264 ID=mRNA_2264|Name=jgi.p|Nanoce1779_2|579668|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp|location=Sequence derived from alignment at scaffold_4:1214323..1215789+ (Nannochloropsis oceanica)
CAGGCTTCGATATTTGGAGCAGCCGGGACCATGCAGCAGTTCTATCGGTC
GGCGGCTAGAGCCGGAGGGGCGTGGCGGAGGGCACCAGCATCGTCATCAC
TAGCATCACATCCCCTCCTTCTCACAGCCGCCGCCTCCTCGCACGCCTCC
TTCCGGGTCGTCACGCCCTCCTTTTCAGCCTTCGCCTCCGCGAGAATAAA
TACTTCGACCATCACTGGCTCCTCCTCCCTCCCCATGCCTCCCTCTTCCT
CCTCTTCCTCCTCCTCCTCCTCCCCTCTCACCGAGCCCTCCACCACATAC
GGCGATGATCGTCGTCTCTACCCTCTCCCGCACAAGCGCTGTTCCGCCGC
CTCACTACCCCTGGACGTACAGCATTCAGATCGCTTTCTCGTCTCGCGGC
GCGGCCAAGCCCTTTATCAACAAACGTATCACCCACCGTCCTTGAACAAC
GAGACACTGAAAGGCGTAGTATTCATGGTGCACGATTACGGTGATCACTC
CTCCTGGTTCTTAAGGGATCTGGCCGTAGTACTTTGCCAGCAGGTTGGAG
AGAGAGAAAGAGGGGGGGGGGAGGGAATGGGGGGAGGATATTTTGAGATT
CTGTTGTTGGATCCATTTTTTGCCTCGTCTCATTTTCTTACCCTCTCTCC
TTCCCTCCCTTCATCCCTCCCTCCCTTCCCCCTTCTTTTGTAGGGCTATG
GCGTTGTATCAATCGATTTGGAGGGACACGGGCGCAGCGACGGTTTGCGC
GGTCAGCTGCACATAGCCCATGCCGTTGCCGACCTGTGCGATCAGTTTGG
CGCCCTCTCCCTCGGATACGCCGCCACGCCGTGCTTCCTCCTGGGGGAAG
GGCTAGGGGCGGCACTAGCCTACAAGACCTATCTGATGCAAGGGGGCAGG
TACTGGGACGGAGTGATCATGCTCTCCCCTACACTGGCGTTCCCACCGCG
ATTGAGACCTCCCAAATGGGTGATCAGGTACTGAGGGCGGGAGGGAGGGC
GGGAAGGAGGGAGGGAGGGAAAAAATGTATTGGGATTAGTCTGTGAAACT
CATAATGAAGCACGAATGTACTCACCGACCCACCTTTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCGCAGTCTCCTGCGTCGCTTCG
AGCATCGGCTGGGCAAAGCGCCCCTCGTGCCCTGGGGTCAGCTCTACCTT
GACCTCCTCCCGGAGTCCGTCACTCGCCAAGAGGTCCTCGAGAACCCCTT
TTTCATCAAGCAGCATGGCATGCGCGTCTCCACCCTCCTGCACACCCTGT
CGACCTTGGACGAGGTCTACCTCCACGCACCGACCCCCTCCTCCCTCGAT
CCCCCTCCCCCGCCCTCCGTATGCACGTTTGAAGAGCTGACGGCACCGAT
CCTGATATTGCAAGGGGAGGAGGATCAATTCCATGGAGGGAGGGGGGGAG
GCAGGGAGGGAGGGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_4:1214323..1215789+

>mRNA_2264 ID=mRNA_2264|Name=jgi.p|Nanoce1779_2|579668|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_4:1214323..1215789+ (Nannochloropsis oceanica)
ATGCAGCAGTTCTATCGGTCGGCGGCTAGAGCCGGAGGGGCGTGGCGGAG
GGCACCAGCATCGTCATCACTAGCATCACATCCCCTCCTTCTCACAGCCG
CCGCCTCCTCGCACGCCTCCTTCCGGGTCGTCACGCCCTCCTTTTCAGCC
TTCGCCTCCGCGAGAATAAATACTTCGACCATCACTGGCTCCTCCTCCCT
CCCCATGCCTCCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCCCTCTCA
CCGAGCCCTCCACCACATACGGCGATGATCGTCGTCTCTACCCTCTCCCG
CACAAGCGCTGTTCCGCCGCCTCACTACCCCTGGACGTACAGCATTCAGA
TCGCTTTCTCGTCTCGCGGCGCGGCCAAGCCCTTTATCAACAAACGTATC
ACCCACCGTCCTTGAACAACGAGACACTGAAAGGCGTAGTATTCATGGTG
CACGATTACGGTGATCACTCCTCCTGGTTCTTAAGGGATCTGGCCGTAGT
ACTTTGCCAGCAGGTTGGAGAGAGAGAAAGAGGGGGGGGGGAGGGAATGG
GGGGAGGATATTTTGAGATTCTGTTGTTGGATCCATTTTTTGCCTCGTCT
CATTTTCTTACCCTCTCTCCTTCCCTCCCTTCATCCCTCCCTCCCTTCCC
CCTTCTTTTGTAG
back to top
Synonyms
Publications