jgi.p|Nanoce1779_2|579664, mRNA_2262 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579664
Unique NamemRNA_2262
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1254
Alignment locationscaffold_4:1204272..1205525 +

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Properties
Property NameValue
TranscriptId579750
TrackFilteredModels2
ProteinId579664
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1204272..1205525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579664gene_2262Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579664mRNA_2262-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2262CDS_2262Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2262 ID=mRNA_2262|Name=jgi.p|Nanoce1779_2|579664|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp
GCAACAGCAGCTCGCTACCGGCGGGCCCGAGTCCTCCTCCTCTTCCTCCT
CTTCCTACTCCTCTTCCTCTTCCTTTTCCTTCACCACCATCACCACCACC
ACCACTGCCTCCCCTCTCTGCATTCTTCGGAAAGGGAGCAGCTACATGAA
CCCTCCTCCCTCCCTCCATCCTACAAGCACCACCACCAGCAGCAACACCA
GCACCACCACCAGCACCACTACCAGCAGCAGCAGTAGCAACAGCAGCAGC
CGCAGCAGCAGCAGCAGCAGCAGCCGCAAGCGAAATATCCGTTTCGCCGA
TGCAATGGGACAGAGTCTCGCGGCCGTTAATTATTCCGAACGGTTGCAGT
ACAGCTCGGCTTCGAGGACACAACATTGGTTGGAGGGGGAGGGCTGGATG
GAAGAGGACGAAGACGATGAAGACGAGGAGGGAGATCACGGGGAAGGGTG
GGTGGCTTGCCAGGGAAATCTGAGGAGGAATGAAGGAAATCCGCGGGTGG
TGGGAGGAAGGGGGGAATGGTGGTTAATGTGGCCGAAGGAAAAGACGGCG
GCGCAAAAGGCGATGGAGAGGAGGAGGAAGATGAAGAGGGAGATTTTGAG
GCGGAAAGAGAAGGCGCAAAGGGAAGAGCGACAGAAGGAGAAGGAGCTAG
AAGAAAAGAAGGAGGAGAAAGGGAGGGGGGTGCAGGGAGAGAGGGAGAAG
GGGAAGTGCAGCGTGGCGGTTAAAAGTAACATGTACACAAGAGCCAAGTT
GCCACCACCACCACCACCACCAACATTAGCACCACCACCAGCAAACGCCA
CGACGAAAGGTGTTGTTACTCTAGCAGCACTGGTGGTGCCCACGGGAGCA
GGAACAAAAGGCGAAAGAGAGAAGGAAGGAGGAGAAAGAGGAAGGATGCA
GGGTGAGATGATAGCATCAACGACGACACGCACGGCGGCTGCGGTGGTGG
GTGTGGCCAAAAAGGCGAGGGACATTGGGGAAATCTTTCTGGTGGGGGAG
GAGGAGGAAGAATTGAGGAAAGGATGTTGTGTCATGTCGTGAGGAAAAGA
GAGAGAGGGGGAGAGAGGGAGAGGTCACACATACACACATCTACACCCAC
TCACACACAAACACATTTCAATGTGAAAAAAAAAATCTCGATGAAAAATC
CACACGGGGGGTAGCGCGATTGTGATTTTCGTTCACCTCTCCTCCCTCGA
TTTCCGGCTGAGACTTTCAAGGAAACTGTCGATGGGAAGTAGAACAAGAA
CAAG
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protein sequence of jgi.p|Nanoce1779_2|579664

>mRNA_2262-protein ID=mRNA_2262-protein|Name=jgi.p|Nanoce1779_2|579664|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MNPPPSLHPTSTTTSSNTSTTTSTTTSSSSSNSSSRSSSSSSSRKRNIRF
ADAMGQSLAAVNYSERLQYSSASRTQHWLEGEGWMEEDEDDEDEEGDHGE
GWVACQGNLRRNEGNPRVVGGRGEWWLMWPKEKTAAQKAMERRRKMKREI
LRRKEKAQREERQKEKELEEKKEEKGRGVQGEREKGKCSVAVKSNMYTRA
KLPPPPPPPTLAPPPANATTKGVVTLAALVVPTGAGTKGEREKEGGERGR
MQGEMIASTTTRTAAAVVGVAKKARDIGEIFLVGEEEEELRKGCCVMS*
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mRNA from alignment at scaffold_4:1204272..1205525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2262 ID=mRNA_2262|Name=jgi.p|Nanoce1779_2|579664|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at scaffold_4:1204272..1205525+ (Nannochloropsis oceanica)
GCAACAGCAGCTCGCTACCGGCGGGCCCGAGTCCTCCTCCTCTTCCTCCT
CTTCCTACTCCTCTTCCTCTTCCTTTTCCTTCACCACCATCACCACCACC
ACCACTGCCTCCCCTCTCTGCATTCTTCGGAAAGGGAGCAGCTACATGAA
CCCTCCTCCCTCCCTCCATCCTACAAGCACCACCACCAGCAGCAACACCA
GCACCACCACCAGCACCACTACCAGCAGCAGCAGTAGCAACAGCAGCAGC
CGCAGCAGCAGCAGCAGCAGCAGCCGCAAGCGAAATATCCGTTTCGCCGA
TGCAATGGGACAGAGTCTCGCGGCCGTTAATTATTCCGAACGGTTGCAGT
ACAGCTCGGCTTCGAGGACACAACATTGGTTGGAGGGGGAGGGCTGGATG
GAAGAGGACGAAGACGATGAAGACGAGGAGGGAGATCACGGGGAAGGGTG
GGTGGCTTGCCAGGGAAATCTGAGGAGGAATGAAGGAAATCCGCGGGTGG
TGGGAGGAAGGGGGGAATGGTGGTTAATGTGGCCGAAGGAAAAGACGGCG
GCGCAAAAGGCGATGGAGAGGAGGAGGAAGATGAAGAGGGAGATTTTGAG
GCGGAAAGAGAAGGCGCAAAGGGAAGAGCGACAGAAGGAGAAGGAGCTAG
AAGAAAAGAAGGAGGAGAAAGGGAGGGGGGTGCAGGGAGAGAGGGAGAAG
GGGAAGTGCAGCGTGGCGGTTAAAAGTAACATGTACACAAGAGCCAAGTT
GCCACCACCACCACCACCACCAACATTAGCACCACCACCAGCAAACGCCA
CGACGAAAGGTGTTGTTACTCTAGCAGCACTGGTGGTGCCCACGGGAGCA
GGAACAAAAGGCGAAAGAGAGAAGGAAGGAGGAGAAAGAGGAAGGATGCA
GGGTGAGATGATAGCATCAACGACGACACGCACGGCGGCTGCGGTGGTGG
GTGTGGCCAAAAAGGCGAGGGACATTGGGGAAATCTTTCTGGTGGGGGAG
GAGGAGGAAGAATTGAGGAAAGGATGTTGTGTCATGTCGTGAGGAAAAGA
GAGAGAGGGGGAGAGAGGGAGAGGTCACACATACACACATCTACACCCAC
TCACACACAAACACATTTCAATGTGAAAAAAAAAATCTCGATGAAAAATC
CACACGGGGGGTAGCGCGATTGTGATTTTCGTTCACCTCTCCTCCCTCGA
TTTCCGGCTGAGACTTTCAAGGAAACTGTCGATGGGAAGTAGAACAAGAA
CAAG
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Coding sequence (CDS) from alignment at scaffold_4:1204272..1205525+

>mRNA_2262 ID=mRNA_2262|Name=jgi.p|Nanoce1779_2|579664|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_4:1204272..1205525+ (Nannochloropsis oceanica)
ATGAACCCTCCTCCCTCCCTCCATCCTACAAGCACCACCACCAGCAGCAA
CACCAGCACCACCACCAGCACCACTACCAGCAGCAGCAGTAGCAACAGCA
GCAGCCGCAGCAGCAGCAGCAGCAGCAGCCGCAAGCGAAATATCCGTTTC
GCCGATGCAATGGGACAGAGTCTCGCGGCCGTTAATTATTCCGAACGGTT
GCAGTACAGCTCGGCTTCGAGGACACAACATTGGTTGGAGGGGGAGGGCT
GGATGGAAGAGGACGAAGACGATGAAGACGAGGAGGGAGATCACGGGGAA
GGGTGGGTGGCTTGCCAGGGAAATCTGAGGAGGAATGAAGGAAATCCGCG
GGTGGTGGGAGGAAGGGGGGAATGGTGGTTAATGTGGCCGAAGGAAAAGA
CGGCGGCGCAAAAGGCGATGGAGAGGAGGAGGAAGATGAAGAGGGAGATT
TTGAGGCGGAAAGAGAAGGCGCAAAGGGAAGAGCGACAGAAGGAGAAGGA
GCTAGAAGAAAAGAAGGAGGAGAAAGGGAGGGGGGTGCAGGGAGAGAGGG
AGAAGGGGAAGTGCAGCGTGGCGGTTAAAAGTAACATGTACACAAGAGCC
AAGTTGCCACCACCACCACCACCACCAACATTAGCACCACCACCAGCAAA
CGCCACGACGAAAGGTGTTGTTACTCTAGCAGCACTGGTGGTGCCCACGG
GAGCAGGAACAAAAGGCGAAAGAGAGAAGGAAGGAGGAGAAAGAGGAAGG
ATGCAGGGTGAGATGATAGCATCAACGACGACACGCACGGCGGCTGCGGT
GGTGGGTGTGGCCAAAAAGGCGAGGGACATTGGGGAAATCTTTCTGGTGG
GGGAGGAGGAGGAAGAATTGAGGAAAGGATGTTGTGTCATGTCGTGA
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Synonyms
Publications