jgi.p|Nanoce1779_2|628378, mRNA_2261 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628378
Unique NamemRNA_2261
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1107
Alignment locationscaffold_4:1200237..1201498 +

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Properties
Property NameValue
TranscriptId628464
TrackFilteredModels2
ProteinId628378
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1200237..1201498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628378gene_2261Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628378mRNA_2261-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2261CDS_2261Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2261 ID=mRNA_2261|Name=jgi.p|Nanoce1779_2|628378|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ACAGTGGGAAGCTATCCAGACGAGATGGGCATCTTTTAAACCGACTCCAT
GCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTCGTCGCCGCGAC
CGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCTCTACAACGGCC
AGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTTGACGCCCACAA
GCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCACCGTCGTCTGTC
ACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGACGACTGGTACC
ACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAAGGCTTTTTAGG
GTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGCAGTGTACAAAG
CTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCCTCATCTCCCAT
CGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCTCCCTCCCTCCC
TTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGGTGTCGTGGCCG
GAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGATTCGAAATCGT
TTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGATTGCTTGCAGCA
GGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGGCTTAGGGCCAA
CGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTCTGGCGTTTGCT
GCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGGGCTCGACTTCG
GGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGGGGTTGTGGAGC
TCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGACAGTGGCCTTG
CCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGGGTGAAAGGGAG
GGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCTGGTGAGGGAGG
GAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGTTTGGACGGGCG
GTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGGGTGAAGGACAG
GTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|628378

>mRNA_2261-protein ID=mRNA_2261-protein|Name=jgi.p|Nanoce1779_2|628378|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPGSSSSGLMGHVSSPRPSPSSHFSSQPPPSTTASGSTTDTTTANVVDAH
KQVLAGSIAAFVSTVVCHPIDVLRTELQIRTTGTTARVCARRIRDAEGFL
GFYKGLSAPLAAQAVYKAIIFGTNSTAQEFLISHRRKRFRPSSSSSSPSL
PSSLLTYPDIFLCGVVAGGVNAVVVSPVELIRNRLVAHKTHFAGPRDCLQ
QAWREGGVRGLWRGLGPTLWRDGPGVGAWFLAFAAGKDWLLNTKKERARL
RGEGGREGDVVGLGVVELLLAGSAAGVAFWTVALPFDTVKSVMQVKGVKG
RVGKEGMGAVARRLVREGGVGRLFRGWPAAFGRAVPGSAATLATFDWVKD
RL*
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mRNA from alignment at scaffold_4:1200237..1201498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2261 ID=mRNA_2261|Name=jgi.p|Nanoce1779_2|628378|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp|location=Sequence derived from alignment at scaffold_4:1200237..1201498+ (Nannochloropsis oceanica)
ACAGTGGGAAGCTATCCAGACGAGATGGGCATCTTTTAAACCGACTCCAT
GCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTCGTCGCCGCGAC
CGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCTCTACAACGGCC
AGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTTGACGCCCACAA
GCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCACCGTCGTCTGTC
ACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGACGACTGGTACC
ACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAAGGCTTTTTAGG
GTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGCAGTGTACAAAG
CGTAAGTTTTCCTCCGTATACTTATGGTATCTTCTTGTTATTCCTCTGTC
CCTCCATCCCGTTCAAACTAAATGCCTCTTTTACCTCTTTCCTCCCGTCA
CATCTCCGTCCTTCCCTCTCATCCTTCCTTGTACTCGCTCTCACCTCCTC
ACATAGTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCCTCATCT
CCCATCGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCTCCCTCC
CTCCCTTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGGTGTCGT
GGCCGGAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGATTCGAA
ATCGTTTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGATTGCTTG
CAGCAGGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGGCTTAGG
GCCAACGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTCTGGCGT
TTGCTGCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGGGCTCGA
CTTCGGGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGGGGTTGT
GGAGCTCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGACAGTGG
CCTTGCCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGGGTGAAA
GGGAGGGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCTGGTGAG
GGAGGGAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGTTTGGAC
GGGCGGTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGGGTGAAG
GACAGGTTGTGA
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Coding sequence (CDS) from alignment at scaffold_4:1200237..1201498+

>mRNA_2261 ID=mRNA_2261|Name=jgi.p|Nanoce1779_2|628378|organism=Nannochloropsis oceanica|type=CDS|length=2118bp|location=Sequence derived from alignment at scaffold_4:1200237..1201498+ (Nannochloropsis oceanica)
ATGCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTCGTCGCCGCG
ACCGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCTCTACAACGG
CCAGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTTGACGCCCAC
AAGCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCACCGTCGTCTG
TCACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGACGACTGGTA
CCACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAAGGCTTTTTA
GGGTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGCAGTGTACAA
AGCTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCCTCATCTCCC
ATCGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCTCCCTCCCTC
CCTTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGGTGTCGTGGC
CGGAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGATTCGAAATC
GTTTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGATTGCTTGCAG
CAGGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGGCTTAGGGCC
AACGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTCTGGCGTTTG
CTGCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGGGCTCGACTT
CGGGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGGGGTTGTGGA
GCTCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGACAGTGGCCT
TGCCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGGGTGAAAGGG
AGGGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCTGGTGAGGGA
GGGAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGTTTGGACGGG
CGGTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGGGTGAAGGAC
AGGTTGTGAATGCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTC
GTCGCCGCGACCGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCT
CTACAACGGCCAGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTT
GACGCCCACAAGCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCAC
CGTCGTCTGTCACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGA
CGACTGGTACCACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAA
GGCTTTTTAGGGTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGC
AGTGTACAAAGCTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCC
TCATCTCCCATCGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCT
CCCTCCCTCCCTTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGG
TGTCGTGGCCGGAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGA
TTCGAAATCGTTTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGAT
TGCTTGCAGCAGGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGG
CTTAGGGCCAACGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTC
TGGCGTTTGCTGCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGG
GCTCGACTTCGGGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGG
GGTTGTGGAGCTCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGA
CAGTGGCCTTGCCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGG
GTGAAAGGGAGGGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCT
GGTGAGGGAGGGAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGT
TTGGACGGGCGGTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGG
GTGAAGGACAGGTTGTGA
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Synonyms
Publications