Properties
| Property Name | Value |
|---|
| TranscriptId | 298302 |
| Track | FilteredModels2 |
| ProteinId | 298216 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1190767..1193394 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2257 ID=mRNA_2257|Name=jgi.p|Nanoce1779_2|298216|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp
CTGCACGACACTTTTTTCCATATGCCTCTTCCGCATCCTCTTTATAACAC
ACGCACACGACACTTACACGCCCTGCACATGCCTTGCATAGACGTCGATC
AATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCGAACGAGTGCAT
GGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCACCAGAGCACCAG
CAGCAAGCACTCTAAGCTAGAGACCAAGCAGACATCAACCAATCCAGGCG
TGCTTCGGCCCAAGGCATGATTAGGAGCACTCGGCGTGGCCTTGGCATTA
ACCACCACCCACCGTTCATCCTTATCGCCCTCCGCTGTATTACTTGGTCC
TTGGGCGGTGGATACTTGCCCTTAGTCTCAGCACTAGTTCCTCTCGCCAG
CTCAAGCGCCACCACCAGCAGCACCATCAGCATCAGTCCCCGGGGGTCTG
CCTCTCCATCATCTTCAGTGGGGGAAGCAACGCCTTTTTGCTCATTCATA
CCATCAGCGTGGGCACCTTCGCCGGTCGTTTCGTGTATTTCATCCTCTCG
GTCTGTCACTTCCTCTTTCTCCTCTTTCTCCTCTTCTCCTCTCGCACGCT
CACGAAGGGGATCTTCGGCCTCTCTTTTCCCCTCCACTTTCACCAGCAGT
GGTAGCTGCAGTGGCAACAGCGTACAGACCTTTTCCTCCCCCTCTTCAAC
CATGACCGAATCCCCCATCCCCACCGAAGTCCAATCTGCCCTCCACGCCC
TCTACAACATGCCGCCGTCCTCCTCCTCCCCTCCCTCCTCCTCCTCCTCC
CACCTCCACATCTGCATCTGCACCAGCGGCGCCGGTGGTTCACTCTTTGC
ATGGATGCTCGGTACGCCTGGAGCGAGCAACGTGTTAATTGAACTATCTT
CCCCCTACGCCAAGGGCTCTATCAAGGCCTACCTCAAAGGTGAAGGAGGG
CGGGAGGGAGGAAGCGGGGAGCAACTACCCTCCAACGGCTCCTACTGCTC
TGCATCGACAGCACGAGAGCTCGCCCAGGCGGCGTACACGCGCGCTGTGA
CATCTGCAGTGGCGGGTGGGGAGGAGGAGGGCGGGAGGGAGGGAGGGATA
GAGGTGTTGCGGAAGGGGAAGTTCGTCGGCGTAGCTTGCAAGGCGGCCGT
GGTGTCAAGGGAAACCAAAAGGGGGGCACACAGGGCCCATGTAGCAACTC
ACACACTGGACGAAGATGGAAAAATCGTCTCAAAGTCCTACTATTTGGCA
CTTACCAAAGGGGCTCGGACACGGACAGAGGAAGATGCTGAGGTCAGTAA
GGGGACTCTGGCTGCGCTATTGGAAGCCACCCACCCCTCCCTTCATCCCT
CGTCCTCGTCTTCGTCCTCGTCCTCGTCGTGGCTAGAGGCTCTGTGCGTG
AGCGCCGGGAAAGGCGGGGCGGGCGGGGAGGATAAGCTGGTGCGGGTAGT
GGAGGAGGAGCAGAAGAAGGGAGGGAAGGAGGGAGGGAAGGAAAGAGGGG
ATGCACTTGACGCGCTGATGATCCACCACACTGTCGATCGTGTTCTCTAC
GTCCCCTCCCCCCACGCACCCAGCGGCCTCAAAGCCTTTCCTTCCTCCGT
CCCCCTCCTCTCGCCCTCCCTCCCTCCCTCACTCACTCCCTCCCCCCTCA
TCATCTACCCCGGGTCGTTCAACCCTCTCCACGACGGCCACCTCCAACTC
GCTCATGCCGCCCAGACCCTCCTTGGCTCCATCCATCCCTCCATCCCTCC
CTCCCTCCCCCCCGTCCTCTTCGAGATATCCACCTGTAATGCCGATAAAG
GTTTCATTGACCGAACTCTCCTCCTCCCACGCCTTTCCCAGTTCTCCTCT
CCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTTCTCGTCCT
GACCCGCGCCCCTCTCTTCGTAACGAAATCCCGACTCTTTCCCAATTCTT
ACTTCCTCATCGGCGCGGACACGGCCCAACGGCTGCTGCAACCGAAATAT
TATGTCGTGGATTCAGAGGAAGCGAGGGAGGGAGGGAAGGAGGAAGGGAG
GGACGCCCTCCTCCTCGCCCTGAATGAGATTAGTATGCATGGTTGTAGGT
TTGTGGTGGGTGGAAGGAAGACGAAGGAGGGAGGGTTCATGACGCTGGAT
TCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCTCCCTCGGTCGATTCTGGG
AATGTTTCTCGGATTGAGTGAAGAGCAGTTTCGCGTCGACATGAGCTCGA
CGGAAATCCGCGCACAGATGGCAGTGAAGGGGTGAAGCAGGGAGGGAGGA
AGAGGAGGGAGGGGAGGAGAGAGGGGAGTAGTTAGCGTTCAAAGAGAAAT
GCAGGGACGCCTGTCTTGGCCCCGGAGCAGCGCGTTTTACTTTCACCCTT
CATGACAACAAGGAGAAAGGAGAGGTGAAGAAGGAGGAAGATAGCCGCCG
CCACACAGAAAGAAACAAGACGCCATCATAGGCAAATGACA back to topprotein sequence of jgi.p|Nanoce1779_2|298216 >mRNA_2257-protein ID=mRNA_2257-protein|Name=jgi.p|Nanoce1779_2|298216|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MIRSTRRGLGINHHPPFILIALRCITWSLGGGYLPLVSALVPLASSSATT
SSTISISPRGSASPSSSVGEATPFCSFIPSAWAPSPVVSCISSSRSVTSS
FSSFSSSPLARSRRGSSASLFPSTFTSSGSCSGNSVQTFSSPSSTMTESP
IPTEVQSALHALYNMPPSSSSPPSSSSSHLHICICTSGAGGSLFAWMLGT
PGASNVLIELSSPYAKGSIKAYLKGEGGREGGSGEQLPSNGSYCSASTAR
ELAQAAYTRAVTSAVAGGEEEGGREGGIEVLRKGKFVGVACKAAVVSRET
KRGAHRAHVATHTLDEDGKIVSKSYYLALTKGARTRTEEDAEVSKGTLAA
LLEATHPSLHPSSSSSSSSSSWLEALCVSAGKGGAGGEDKLVRVVEEEQK
KGGKEGGKERGDALDALMIHHTVDRVLYVPSPHAPSGLKAFPSSVPLLSP
SLPPSLTPSPLIIYPGSFNPLHDGHLQLAHAAQTLLGSIHPSIPPSLPPV
LFEISTCNADKGFIDRTLLLPRLSQFSSPSSFSLPPSLPLPLLVLTRAPL
FVTKSRLFPNSYFLIGADTAQRLLQPKYYVVDSEEAREGGKEEGRDALLL
ALNEISMHGCRFVVGGRKTKEGGFMTLDSVLEEARPLSLPRSILGMFLGL
SEEQFRVDMSSTEIRAQMAVKG* back to topmRNA from alignment at scaffold_4:1190767..1193394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2257 ID=mRNA_2257|Name=jgi.p|Nanoce1779_2|298216|organism=Nannochloropsis oceanica|type=mRNA|length=2628bp|location=Sequence derived from alignment at scaffold_4:1190767..1193394+ (Nannochloropsis oceanica)
CTGCACGACACTTTTTTCCATATGCCTCTTCCGCATCCTCTTTATAACAC
ACGCACACGACACTTACACGCCCTGCACATGCCTTGCATAGACGTCGATC
AATTTGCCTTCTGGCTTTGCTTGTGGACATCGGGCACCGAACGAGTGCAT
GGACAAGTGATATCAAAGCATCAGCCCCAGCAGCAGCACCAGAGCACCAG
CAGCAAGCACTCTAAGCTAGAGACCAAGCAGACATCAACCAATCCAGGCG
TGCTTCGGCCCAAGGCATGATTAGGAGCACTCGGTACGTCTATCTGTATA
CACGCAGCTTCTGGTCTTGTGCCCTCCTTCCTGCTCCCCCTTTTTTCCTC
CTTACTTGACCCGTTCTCCTCCCTCTCTCCCCTCCCTCCCTCCCTCTTCC
CCCTGATCCACTCCCAATAGGCGTGGCCTTGGCATTAACCACCACCCACC
GTTCATCCTTATCGCCCTCCGCTGTATTACTTGGTCCTTGGGCGGTGGAT
ACTTGCCCTTAGTCTCAGCACTAGTTCCTCTCGCCAGCTCAAGCGCCACC
ACCAGCAGCACCATCAGCATCAGTCCCCGGGGGTCTGCCTCTCCATCATC
TTCAGTGGGGGAAGCAACGCCTTTTTGCTCATTCATACCATCAGCGTGGG
CACCTTCGCCGGTCGTTTCGTGTATTTCATCCTCTCGGTCTGTCACTTCC
TCTTTCTCCTCTTTCTCCTCTTCTCCTCTCGCACGCTCACGAAGGGGATC
TTCGGCCTCTCTTTTCCCCTCCACTTTCACCAGCAGTGGTAGCTGCAGTG
GCAACAGCGTACAGACCTTTTCCTCCCCCTCTTCAACCATGACCGAATCC
CCCATCCCCACCGAAGTCCAATCTGCCCTCCACGCCCTCTACAACATGCC
GCCGTCCTCCTCCTCCCCTCCCTCCTCCTCCTCCTCCCACCTCCACATCT
GCATCTGCACCAGCGGCGCCGGTGGTTCACTCTTTGCATGGATGCTCGGT
ACGCCTGGAGCGAGCAACGTGTTAATTGAACTATCTTCCCCCTACGCCAA
GGGCTCTATCAAGGCCTACCTCAAAGGTGAAGGAGGGCGGGAGGGAGGAA
GCGGGGAGCAACTACCCTCCAACGGCTCCTACTGCTCTGCATCGACAGCA
CGAGAGCTCGCCCAGGCGGCGTACACGCGCGCTGTGACATCTGCAGTGGC
GGGTGGGGAGGAGGAGGGCGGGAGGGAGGGAGGGATAGAGGTGTTGCGGA
AGGGGAAGTTCGTCGGCGTAGCTTGCAAGGCGGCCGTGGTGTCAAGGGAA
ACCAAAAGGGGGGCACACAGGGCCCATGTAGCAACTCACACACTGGACGA
AGATGGAAAAATCGTCTCAAAGTCCTACTATTTGGCACTTACCAAAGGGG
CTCGGACACGGACAGAGGAAGATGCTGAGGTCAGTAAGGGGACTCTGGCT
GCGCTATTGGAAGCCACCCACCCCTCCCTTCATCCCTCGTCCTCGTCTTC
GTCCTCGTCCTCGTCGTGGCTAGAGGCTCTGTGCGTGAGCGCCGGGAAAG
GCGGGGCGGGCGGGGAGGATAAGCTGGTGCGGGTAGTGGAGGAGGAGCAG
AAGAAGGGAGGGAAGGAGGGAGGGAAGGAAAGAGGGGATGCACTTGACGC
GCTGATGATCCACCACACTGTCGATCGTGTTCTCTACGTCCCCTCCCCCC
ACGCACCCAGCGGCCTCAAAGCCTTTCCTTCCTCCGTCCCCCTCCTCTCG
CCCTCCCTCCCTCCCTCACTCACTCCCTCCCCCCTCATCATCTACCCCGG
GTCGTTCAACCCTCTCCACGACGGCCACCTCCAACTCGCTCATGCCGCCC
AGACCCTCCTTGGCTCCATCCATCCCTCCATCCCTCCCTCCCTCCCCCCC
GTCCTCTTCGAGATATCCACCTGTAATGCCGATAAAGGTTTCATTGACCG
AACTCTCCTCCTCCCACGCCTTTCCCAGTTCTCCTCTCCCTCCTCTTTCT
CCCTCCCTCCCTCCCTCCCTCTCCCCCTTCTCGTCCTGACCCGCGCCCCT
CTCTTCGTAACGAAATCCCGACTCTTTCCCAATTCTTACTTCCTCATCGG
CGCGGACACGGCCCAACGGCTGCTGCAACCGAAATATTATGTCGTGGATT
CAGAGGAAGCGAGGGAGGGAGGGAAGGAGGAAGGGAGGGACGCCCTCCTC
CTCGCCCTGAATGAGATTAGTATGCATGGTTGTAGGTTTGTGGTGGGTGG
AAGGAAGACGAAGGAGGGAGGGTTCATGACGCTGGATTCGGTGTTGGAGG
AAGCCCGCCCTCTGTCCCTCCCTCGGTCGATTCTGGGAATGTTTCTCGGA
TTGAGTGAAGAGCAGTTTCGCGTCGACATGAGCTCGACGGAAATCCGCGC
ACAGATGGCAGTGAAGGGGTGAAGCAGGGAGGGAGGAAGAGGAGGGAGGG
GAGGAGAGAGGGGAGTAGTTAGCGTTCAAAGAGAAATGCAGGGACGCCTG
TCTTGGCCCCGGAGCAGCGCGTTTTACTTTCACCCTTCATGACAACAAGG
AGAAAGGAGAGGTGAAGAAGGAGGAAGATAGCCGCCGCCACACAGAAAGA
AACAAGACGCCATCATAGGCAAATGACA back to topCoding sequence (CDS) from alignment at scaffold_4:1190767..1193394+ >mRNA_2257 ID=mRNA_2257|Name=jgi.p|Nanoce1779_2|298216|organism=Nannochloropsis oceanica|type=CDS|length=4038bp|location=Sequence derived from alignment at scaffold_4:1190767..1193394+ (Nannochloropsis oceanica)
ATGATTAGGAGCACTCGGCGTGGCCTTGGCATTAACCACCACCCACCGTT
CATCCTTATCGCCCTCCGCTGTATTACTTGGTCCTTGGGCGGTGGATACT
TGCCCTTAGTCTCAGCACTAGTTCCTCTCGCCAGCTCAAGCGCCACCACC
AGCAGCACCATCAGCATCAGTCCCCGGGGGTCTGCCTCTCCATCATCTTC
AGTGGGGGAAGCAACGCCTTTTTGCTCATTCATACCATCAGCGTGGGCAC
CTTCGCCGGTCGTTTCGTGTATTTCATCCTCTCGGTCTGTCACTTCCTCT
TTCTCCTCTTTCTCCTCTTCTCCTCTCGCACGCTCACGAAGGGGATCTTC
GGCCTCTCTTTTCCCCTCCACTTTCACCAGCAGTGGTAGCTGCAGTGGCA
ACAGCGTACAGACCTTTTCCTCCCCCTCTTCAACCATGACCGAATCCCCC
ATCCCCACCGAAGTCCAATCTGCCCTCCACGCCCTCTACAACATGCCGCC
GTCCTCCTCCTCCCCTCCCTCCTCCTCCTCCTCCCACCTCCACATCTGCA
TCTGCACCAGCGGCGCCGGTGGTTCACTCTTTGCATGGATGCTCGGTACG
CCTGGAGCGAGCAACGTGTTAATTGAACTATCTTCCCCCTACGCCAAGGG
CTCTATCAAGGCCTACCTCAAAGGTGAAGGAGGGCGGGAGGGAGGAAGCG
GGGAGCAACTACCCTCCAACGGCTCCTACTGCTCTGCATCGACAGCACGA
GAGCTCGCCCAGGCGGCGTACACGCGCGCTGTGACATCTGCAGTGGCGGG
TGGGGAGGAGGAGGGCGGGAGGGAGGGAGGGATAGAGGTGTTGCGGAAGG
GGAAGTTCGTCGGCGTAGCTTGCAAGGCGGCCGTGGTGTCAAGGGAAACC
AAAAGGGGGGCACACAGGGCCCATGTAGCAACTCACACACTGGACGAAGA
TGGAAAAATCGTCTCAAAGTCCTACTATTTGGCACTTACCAAAGGGGCTC
GGACACGGACAGAGGAAGATGCTGAGGTCAGTAAGGGGACTCTGGCTGCG
CTATTGGAAGCCACCCACCCCTCCCTTCATCCCTCGTCCTCGTCTTCGTC
CTCGTCCTCGTCGTGGCTAGAGGCTCTGTGCGTGAGCGCCGGGAAAGGCG
GGGCGGGCGGGGAGGATAAGCTGGTGCGGGTAGTGGAGGAGGAGCAGAAG
AAGGGAGGGAAGGAGGGAGGGAAGGAAAGAGGGGATGCACTTGACGCGCT
GATGATCCACCACACTGTCGATCGTGTTCTCTACGTCCCCTCCCCCCACG
CACCCAGCGGCCTCAAAGCCTTTCCTTCCTCCGTCCCCCTCCTCTCGCCC
TCCCTCCCTCCCTCACTCACTCCCTCCCCCCTCATCATCTACCCCGGGTC
GTTCAACCCTCTCCACGACGGCCACCTCCAACTCGCTCATGCCGCCCAGA
CCCTCCTTGGCTCCATCCATCCCTCCATCCCTCCCTCCCTCCCCCCCGTC
CTCTTCGAGATATCCACCTGTAATGCCGATAAAGGTTTCATTGACCGAAC
TCTCCTCCTCCCACGCCTTTCCCAGTTCTCCTCTCCCTCCTCTTTCTCCC
TCCCTCCCTCCCTCCCTCTCCCCCTTCTCGTCCTGACCCGCGCCCCTCTC
TTCGTAACGAAATCCCGACTCTTTCCCAATTCTTACTTCCTCATCGGCGC
GGACACGGCCCAACGGCTGCTGCAACCGAAATATTATGTCGTGGATTCAG
AGGAAGCGAGGGAGGGAGGGAAGGAGGAAGGGAGGGACGCCCTCCTCCTC
GCCCTGAATGAGATTAGTATGCATGGTTGTAGGTTTGTGGTGGGTGGAAG
GAAGACGAAGGAGGGAGGGTTCATGACGCTGGATTCGGTGTTGGAGGAAG
CCCGCCCTCTGTCCCTCCCTCGGTCGATTCTGGGAATGTTTCTCGGATTG
AGTGAAGAGCAGTTTCGCGTCGACATGAGCTCGACGGAAATCCGCGCACA
GATGGCAGTGAAGGGGTGAATGATTAGGAGCACTCGGCGTGGCCTTGGCA
TTAACCACCACCCACCGTTCATCCTTATCGCCCTCCGCTGTATTACTTGG
TCCTTGGGCGGTGGATACTTGCCCTTAGTCTCAGCACTAGTTCCTCTCGC
CAGCTCAAGCGCCACCACCAGCAGCACCATCAGCATCAGTCCCCGGGGGT
CTGCCTCTCCATCATCTTCAGTGGGGGAAGCAACGCCTTTTTGCTCATTC
ATACCATCAGCGTGGGCACCTTCGCCGGTCGTTTCGTGTATTTCATCCTC
TCGGTCTGTCACTTCCTCTTTCTCCTCTTTCTCCTCTTCTCCTCTCGCAC
GCTCACGAAGGGGATCTTCGGCCTCTCTTTTCCCCTCCACTTTCACCAGC
AGTGGTAGCTGCAGTGGCAACAGCGTACAGACCTTTTCCTCCCCCTCTTC
AACCATGACCGAATCCCCCATCCCCACCGAAGTCCAATCTGCCCTCCACG
CCCTCTACAACATGCCGCCGTCCTCCTCCTCCCCTCCCTCCTCCTCCTCC
TCCCACCTCCACATCTGCATCTGCACCAGCGGCGCCGGTGGTTCACTCTT
TGCATGGATGCTCGGTACGCCTGGAGCGAGCAACGTGTTAATTGAACTAT
CTTCCCCCTACGCCAAGGGCTCTATCAAGGCCTACCTCAAAGGTGAAGGA
GGGCGGGAGGGAGGAAGCGGGGAGCAACTACCCTCCAACGGCTCCTACTG
CTCTGCATCGACAGCACGAGAGCTCGCCCAGGCGGCGTACACGCGCGCTG
TGACATCTGCAGTGGCGGGTGGGGAGGAGGAGGGCGGGAGGGAGGGAGGG
ATAGAGGTGTTGCGGAAGGGGAAGTTCGTCGGCGTAGCTTGCAAGGCGGC
CGTGGTGTCAAGGGAAACCAAAAGGGGGGCACACAGGGCCCATGTAGCAA
CTCACACACTGGACGAAGATGGAAAAATCGTCTCAAAGTCCTACTATTTG
GCACTTACCAAAGGGGCTCGGACACGGACAGAGGAAGATGCTGAGGTCAG
TAAGGGGACTCTGGCTGCGCTATTGGAAGCCACCCACCCCTCCCTTCATC
CCTCGTCCTCGTCTTCGTCCTCGTCCTCGTCGTGGCTAGAGGCTCTGTGC
GTGAGCGCCGGGAAAGGCGGGGCGGGCGGGGAGGATAAGCTGGTGCGGGT
AGTGGAGGAGGAGCAGAAGAAGGGAGGGAAGGAGGGAGGGAAGGAAAGAG
GGGATGCACTTGACGCGCTGATGATCCACCACACTGTCGATCGTGTTCTC
TACGTCCCCTCCCCCCACGCACCCAGCGGCCTCAAAGCCTTTCCTTCCTC
CGTCCCCCTCCTCTCGCCCTCCCTCCCTCCCTCACTCACTCCCTCCCCCC
TCATCATCTACCCCGGGTCGTTCAACCCTCTCCACGACGGCCACCTCCAA
CTCGCTCATGCCGCCCAGACCCTCCTTGGCTCCATCCATCCCTCCATCCC
TCCCTCCCTCCCCCCCGTCCTCTTCGAGATATCCACCTGTAATGCCGATA
AAGGTTTCATTGACCGAACTCTCCTCCTCCCACGCCTTTCCCAGTTCTCC
TCTCCCTCCTCTTTCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTTCTCGT
CCTGACCCGCGCCCCTCTCTTCGTAACGAAATCCCGACTCTTTCCCAATT
CTTACTTCCTCATCGGCGCGGACACGGCCCAACGGCTGCTGCAACCGAAA
TATTATGTCGTGGATTCAGAGGAAGCGAGGGAGGGAGGGAAGGAGGAAGG
GAGGGACGCCCTCCTCCTCGCCCTGAATGAGATTAGTATGCATGGTTGTA
GGTTTGTGGTGGGTGGAAGGAAGACGAAGGAGGGAGGGTTCATGACGCTG
GATTCGGTGTTGGAGGAAGCCCGCCCTCTGTCCCTCCCTCGGTCGATTCT
GGGAATGTTTCTCGGATTGAGTGAAGAGCAGTTTCGCGTCGACATGAGCT
CGACGGAAATCCGCGCACAGATGGCAGTGAAGGGGTGA back to top
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