jgi.p|Nanoce1779_2|628373, mRNA_2256 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628373
Unique NamemRNA_2256
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length773
Alignment locationscaffold_4:1189603..1190737 -

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Properties
Property NameValue
TranscriptId628459
TrackFilteredModels2
ProteinId628373
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1189603..1190737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628373gene_2256Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628373mRNA_2256-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2256CDS_2256Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2256 ID=mRNA_2256|Name=jgi.p|Nanoce1779_2|628373|organism=Nannochloropsis oceanica|type=mRNA|length=773bp
ACTCGGGCCGATAAGCGAGCAAAGAAGGCATCTTTGCTCATTCTTGAGCC
AGATGTACCCTTGAGCACATTACGCCCCTGACCCTACAGCTACCAGAACG
ACACCCACTACAGCACGAAGAAGAAGGCGTGGGAGCGGGTGTGGTGGCTG
TAGAAGCCGCAGCGAAGCAAGCTGCCACTCATTTGTCGCCTCCCCCATCC
GCCCTACCCTCAGTGCCCAACGCCCTCTCACTCGCTCCCCGCCCTCCCCA
TCCTCCCACCCTCCACCCCTTCAGGTCACAGACAGGCAAGCAGGGCAGGC
AGGCAGCCATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATC
AACCCCGCCGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCG
CAAAAGCCTCAAGACACTCAATTCCTGGGCGATTGATCGCGAAGTGTTCC
TAAGCGAAGCCAACAAAATCCGCAGCGAATTTTCGTCCAACGCACACCTT
GCTCCCGAGTCAGGGAAGGTCAAAGCCTTGGTGCGCGAGGCGCAAGAGAA
GCTGCTGACACACTCGCATCCGGACAAGTACATTTTGCCCTGGATGCCGG
GAGGAACTTTGTTTATGCGTAACCCGCCCTTGCCCTTCGACGTGGTGTTT
GCAGGCCACGTGCCCGAGGAGCTGCACGAGGAGCCAATTAATATAGACAT
GACACCGGTGGTGAAGGGGGAGAAGGGCGATGGGCGGGTGTTGGTGGACA
GTGCCAATAAAGCCTACTTTTAG
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protein sequence of jgi.p|Nanoce1779_2|628373

>mRNA_2256-protein ID=mRNA_2256-protein|Name=jgi.p|Nanoce1779_2|628373|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MANASMRAAAAQYINPAVKLSHKTTVIRLYRKSLKTLNSWAIDREVFLSE
ANKIRSEFSSNAHLAPESGKVKALVREAQEKLLTHSHPDKYILPWMPGGT
LFMRNPPLPFDVVFAGHVPEELHEEPINIDMTPVVKGEKGDGRVLVDSAN
KAYF*
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mRNA from alignment at scaffold_4:1189603..1190737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2256 ID=mRNA_2256|Name=jgi.p|Nanoce1779_2|628373|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp|location=Sequence derived from alignment at scaffold_4:1189603..1190737- (Nannochloropsis oceanica)
ACTCGGGCCGATAAGCGAGCAAAGAAGGCATCTTTGCTCATTCTTGAGCC
AGATGTACCCTTGAGCACATTACGCCCCTGACCCTACAGCTACCAGAACG
ACACCCACTACAGCACGAAGAAGAAGGCGTGGGAGCGGGTGTGGTGGCTG
TAGAAGCCGCAGCGAAGCAAGCTGCCACTCATTTGTCGCCTCCCCCATCC
GCCCTACCCTCAGTGCCCAACGCCCTCTCACTCGCTCCCCGCCCTCCCCA
TCCTCCCACCCTCCACCCCTTCAGGTCACAGACAGGCAAGCAGGGCAGGC
AGGCAGCCATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATC
AACCCCGCCGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCG
CAAAAGCCTCAAGACACTCAATTCCTGGTCCGTATGTATACATGGCGTGG
GCCTGGGCCTCCCTTCCTCCCTCTCTCCGTACACCTTTGTGTGCTTGTGA
GCTTGTGTGCTTCTACTATTGCAGTCGACACCGTGAGGGTCTGCTGCATG
TGTGTGGGGTCATCCTCACCTCCTTTCCTCTCTTCTTCCATCTCTCCCCT
TGTTCCCTTGCCTTGGCGTGCCTGTTAGGACATCTTATTGCACTCATTGG
CCTTCCTTCTCCGCATATGCCCACTTTGTATGGAACCTATAGGATGCTCG
CGCCGTCCCACTCACTCACTCACCCTCCCTCCCTCCATCTCCCTCTGTCC
CTCCCTCCTTTCATCCTCACCCCCTCGCCACCCACACAGGGCGATTGATC
GCGAAGTGTTCCTAAGCGAAGCCAACAAAATCCGCAGCGAATTTTCGTCC
AACGCACACCTTGCTCCCGAGTCAGGGAAGGTCAAAGCCTTGGTGCGCGA
GGCGCAAGAGAAGCTGCTGACACACTCGCATCCGGACAAGTACATTTTGC
CCTGGATGCCGGGAGGAACTTTGTTTATGCGTAACCCGCCCTTGCCCTTC
GACGTGGTGTTTGCAGGCCACGTGCCCGAGGAGCTGCACGAGGAGCCAAT
TAATATAGACATGACACCGGTGGTGAAGGGGGAGAAGGGCGATGGGCGGG
TGTTGGTGGACAGTGCCAATAAAGCCTACTTTTAG
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Coding sequence (CDS) from alignment at scaffold_4:1189603..1190737-

>mRNA_2256 ID=mRNA_2256|Name=jgi.p|Nanoce1779_2|628373|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_4:1189603..1190737- (Nannochloropsis oceanica)
GGCGATTGATCGCGAAGTGTTCCTAAGCGAAGCCAACAAAATCCGCAGCG
AATTTTCGTCCAACGCACACCTTGCTCCCGAGTCAGGGAAGGTCAAAGCC
TTGGTGCGCGAGGCGCAAGAGAAGCTGCTGACACACTCGCATCCGGACAA
GTACATTTTGCCCTGGATGCCGGGAGGAACTTTGTTTATGCGTAACCCGC
CCTTGCCCTTCGACGTGGTGTTTGCAGGCCACGTGCCCGAGGAGCTGCAC
GAGGAGCCAATTAATATAGACATGACACCGGTGGTGAAGGGGGAGAAGGG
CGATGGGCGGGTGTTGGTGGACAGTGCCAATAAAGCCTACTTTTAGATGG
CGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTACATCAACCCCGCCGTC
AAACTCTCCCACAAGACGACCGTCATCCGGCTGTATCGCAAAAGCCTCAA
GACACTCAATTCCTGGGCGATTGATCGCGAAGTGTTCCTAAGCGAAGCCA
ACAAAATCCGCAGCGAATTTTCGTCCAACGCACACCTTGCTCCCGAGTCA
GGGAAGGTCAAAGCCTTGGTGCGCGAGGCGCAAGAGAAGCTGCTGACACA
CTCGCATCCGGACAAGTACATTTTGCCCTGGATGCCGGGAGGAACTTTGT
TTATGCGTAACCCGCCCTTGCCCTTCGACGTGGTGTTTGCAGGCCACGTG
CCCGAGGAGCTGCACGAGGAGCCAATTAATATAGACATGACACCGGTGGT
GAAGGGGGAGAAGGGCGATGGGCGGGTGTTGGTGGACAGTGCCAATAAAG
CCTACTTTTAGATGGCGAACGCCTCCATGCGGGCCGCTGCGGCCCAGTAC
ATCAACCCCGCCGTCAAACTCTCCCACAAGACGACCGTCATCCGGCTGTA
TCGCAAAAGCCTCAAGACACTCAATTCCTG
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Synonyms
Publications