jgi.p|Nanoce1779_2|524650, mRNA_2252 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524650
Unique NamemRNA_2252
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length423
Alignment locationscaffold_4:1178695..1179117 +

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Properties
Property NameValue
TranscriptId524736
TrackFilteredModels2
ProteinId524650
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1178695..1179117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524650gene_2252Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524650mRNA_2252-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2252CDS_2252Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2252 ID=mRNA_2252|Name=jgi.p|Nanoce1779_2|524650|organism=Nannochloropsis oceanica|type=mRNA|length=423bp
GCTGCCAACATCTCTCTCACCAGCATCGTCCTCCTTGCCACTTGCGGGCC
CACAATCCTCCTACACGCCTTCACCAAGCCCTACATCTTCGCCCTGCGCC
TCCTCCCCCCTCCATCCCTCCCTCCTCCTCAAGACGACTCCATCCCTCCT
GCCACCACCAGAAGACATACAGACCGAACGCCCGACATCTATTTCTCCGC
TGACACGATTAATTGGCTCTCGCGTCGTGTCACCACAACTTTTAAACTCT
CCGACGTCAAGCCCCTCCCTCGTTCAACTCGTCCTTTTGTGAGTTTCAGT
GCCAGGGATCGACTGTATTTCGTGCATGGTGAGACGTTTCCGGACAAGGA
TTTATTGGAAAAATTGCTAGGACGACCATTGAAGAAGAGTGAAATGGAGA
ATGGGGGAGAGATGAATAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|524650

>mRNA_2252-protein ID=mRNA_2252-protein|Name=jgi.p|Nanoce1779_2|524650|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
AANISLTSIVLLATCGPTILLHAFTKPYIFALRLLPPPSLPPPQDDSIPP
ATTRRHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFS
ARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMENGGEMNR*
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mRNA from alignment at scaffold_4:1178695..1179117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2252 ID=mRNA_2252|Name=jgi.p|Nanoce1779_2|524650|organism=Nannochloropsis oceanica|type=mRNA|length=423bp|location=Sequence derived from alignment at scaffold_4:1178695..1179117+ (Nannochloropsis oceanica)
GCTGCCAACATCTCTCTCACCAGCATCGTCCTCCTTGCCACTTGCGGGCC
CACAATCCTCCTACACGCCTTCACCAAGCCCTACATCTTCGCCCTGCGCC
TCCTCCCCCCTCCATCCCTCCCTCCTCCTCAAGACGACTCCATCCCTCCT
GCCACCACCAGAAGACATACAGACCGAACGCCCGACATCTATTTCTCCGC
TGACACGATTAATTGGCTCTCGCGTCGTGTCACCACAACTTTTAAACTCT
CCGACGTCAAGCCCCTCCCTCGTTCAACTCGTCCTTTTGTGAGTTTCAGT
GCCAGGGATCGACTGTATTTCGTGCATGGTGAGACGTTTCCGGACAAGGA
TTTATTGGAAAAATTGCTAGGACGACCATTGAAGAAGAGTGAAATGGAGA
ATGGGGGAGAGATGAATAGGTAG
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Coding sequence (CDS) from alignment at scaffold_4:1178695..1179117+

>mRNA_2252 ID=mRNA_2252|Name=jgi.p|Nanoce1779_2|524650|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_4:1178695..1179117+ (Nannochloropsis oceanica)
GCTGCCAACATCTCTCTCACCAGCATCGTCCTCCTTGCCACTTGCGGGCC
CACAATCCTCCTACACGCCTTCACCAAGCCCTACATCTTCGCCCTGCGCC
TCCTCCCCCCTCCATCCCTCCCTCCTCCTCAAGACGACTCCATCCCTCCT
GCCACCACCAGAAGACATACAGACCGAACGCCCGACATCTATTTCTCCGC
TGACACGATTAATTGGCTCTCGCGTCGTGTCACCACAACTTTTAAACTCT
CCGACGTCAAGCCCCTCCCTCGTTCAACTCGTCCTTTTGTGAGTTTCAGT
GCCAGGGATCGACTGTATTTCGTGCATGGTGAGACGTTTCCGGACAAGGA
TTTATTGGAAAAATTGCTAGGACGACCATTGAAGAAGAGTGAAATGGAGA
ATGGGGGAGAGATGAATAGGTAG
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Synonyms
Publications