jgi.p|Nanoce1779_2|579625, mRNA_2251 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579625
Unique NamemRNA_2251
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length595
Alignment locationscaffold_4:1177994..1178588 +

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Properties
Property NameValue
TranscriptId579711
TrackFilteredModels2
ProteinId579625
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1177994..1178588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579625gene_2251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579625mRNA_2251-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2251CDS_2251Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2251 ID=mRNA_2251|Name=jgi.p|Nanoce1779_2|579625|organism=Nannochloropsis oceanica|type=mRNA|length=595bp
ACAGGTCCACCATGCTAGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGA
CGGACGATTGTGCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCAC
AAGCACCCGCGTCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCT
CGCGCTCGGGCCCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCC
CCATTATCAGCTTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCC
TCTAACTACCACCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCA
CCAACCCCATCAAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAG
GGGGGGCATCGTGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGAC
CTGCATCATCGGTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCG
AGGCAGTTCCTTTGGTAGGTGCCAGTGCTGGCTGTCGGCGGAAGTTATAG
TGAGACAGCTGCGCTCCTTCTCACCATTTTTTGTTTGTCTCCTTACGCGC
GCACACACACACACACACACACACACACACACACACACACACACA
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protein sequence of jgi.p|Nanoce1779_2|579625

>mRNA_2251-protein ID=mRNA_2251-protein|Name=jgi.p|Nanoce1779_2|579625|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MLAAASPLLLLQRRTIVLTFRANGSGYKITSTRVLCPIKSTRAYSASRSG
PTRYSTSCCGSSSPLSASFPSCAPRLPLYPLTTTEGRRSLSTAPSSTNPI
KGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVP
LVGASAGCRRKL*
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mRNA from alignment at scaffold_4:1177994..1178588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2251 ID=mRNA_2251|Name=jgi.p|Nanoce1779_2|579625|organism=Nannochloropsis oceanica|type=mRNA|length=595bp|location=Sequence derived from alignment at scaffold_4:1177994..1178588+ (Nannochloropsis oceanica)
ACAGGTCCACCATGCTAGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGA
CGGACGATTGTGCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCAC
AAGCACCCGCGTCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCT
CGCGCTCGGGCCCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCC
CCATTATCAGCTTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCC
TCTAACTACCACCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCA
CCAACCCCATCAAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAG
GGGGGGCATCGTGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGAC
CTGCATCATCGGTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCG
AGGCAGTTCCTTTGGTAGGTGCCAGTGCTGGCTGTCGGCGGAAGTTATAG
TGAGACAGCTGCGCTCCTTCTCACCATTTTTTGTTTGTCTCCTTACGCGC
GCACACACACACACACACACACACACACACACACACACACACACA
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Coding sequence (CDS) from alignment at scaffold_4:1177994..1178588+

>mRNA_2251 ID=mRNA_2251|Name=jgi.p|Nanoce1779_2|579625|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_4:1177994..1178588+ (Nannochloropsis oceanica)
ATGCTAGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGACGGACGATTGT
GCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCACAAGCACCCGCG
TCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCTCGCGCTCGGGC
CCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCCCCATTATCAGC
TTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCCTCTAACTACCA
CCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCACCAACCCCATC
AAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAGGGGGGGCATCG
TGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGACCTGCATCATCG
GTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCGAGGCAGTTCCT
TTGGTAGGTGCCAGTGCTGGCTGTCGGCGGAAGTTATAG
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Synonyms
Publications