jgi.p|Nanoce1779_2|579621, mRNA_2250 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579621
Unique Name	mRNA_2250
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1683
Alignment location	scaffold_4:1173649..1175951 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579707
Track	FilteredModels2
ProteinId	579621

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1173649..1175951 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579621	gene_2250	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579621	mRNA_2250-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2250	CDS_2250	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1173649..1175951-
coding sequence from alignment at scaffold_4:1173649..1175951-

mRNA sequence

>mRNA_2250 ID=mRNA_2250|Name=jgi.p|Nanoce1779_2|579621|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
ACAGCAGCAGCTACGACGACAATAACAACTCCGCACCACTACCAGAACCA
CCAGCAGCATGTGTAGTAGCACTGGCTTCCAGCGTCATCTGGCGGAAGAG
GAAAGGGTCGACTATGCCCGCAGCTTGCTATGCGAAGGGGCCTCCCTCCT
CGTTCAAGGCCAAGCGGCCCACAGTGCTATTACAACACGGCATCTCCACC
AATGCTTGGACAAATTCGACCGCGCCTTGCGCCTTGCTCCACACTTGCGA
GCTCACGCGTGGGAACGCGGCTTCGTCCTCTTCTACCTCAACCGATTCAA
GGAGGCCGCGGACCAGTTCGCCTGGTGCACATCTCTAGACCCGGACGACT
GCGAGCCTTTCCTCTGGCGATGCCTGTGCCTTGCCAAGCTTCAAGGTTGG
TCTGCAGGGGTGGCTGTATTGGACCGTTTCACGGGTTGCGACAACCGGCT
GTGTATGATGGAGGTGCTGGCGTTCTACAAAGGACACACGGACTTAGAAT
CAGTTCTTGACCATGCCAGTGATGATTGCCATTCGGCCGCCCGCGCCTCC
TTTGCGTGTGCCCTGTATTTCGAGGCTAGGGGGAGGGGGAGGGAAGCAGA
GACGATGGCCTTACCGCTCTTGTCAGCGGTGGCGAGCGTTGATTGCGGGG
GGGATACGTACCTGAGGTCGCTGGCCCGGATACACATGCACCATGTCAGG
CAAGGCTTAATGCGTGACGCTCCTTTGCAGCAGAACAAGCGGATGAACCA
CCGGAAGGTCAATGGAGTGCTTCAGTTGAGTAGCACTCCCTCCTCACTCT
CATCCTCGTCCTCGTCCTCCACGTCGTCCTCGTCTTTGGAATCGTTGGCG
TCACTGGCGTCATTGCCGTCGATAACGGTGGGGAAGGAGGGAGGGATGGG
GGAAAGAGGCTTGGGGGTGATAAGTGTGTATACGACTGTATCACCACCTG
TGTGTAGATCTCCCTCCAAGCCCGCCTTGTTTCGGACTGCGCTAGTGAAG
AACAGCTGCTGAATGGGGCGCTTGTTCCAGATGTGATATTTTGCGAACTG
CTGGAGAGGGAGAGAGGGAGGTAGGGAGGTTTGTGTTGGCGGGGGAGTGC
AAATATATCGTGATGTACATCGTTATACATAGAGAGAGAAGGATGGAGAA
TAAGAGAGAACTGTGATGGCGTGGAGTATGCCTATGCCTTCCTATCTCTT
TTTGTGTCCTCGGGCGTCAGGGGCCCATATTTTGTGTGCGTGTGCACTTG
CTTGTATGTATGAGGGGTGAGGAAGAGTGAGAGGGTCGTGGGACGCGCGC
TGGTGGCGGCGGGGGTAAAAGGAAATGTAGAGAGAGGTAGCGAGAGATAG
AGAGAAAGAAGGTGTGTGATTGCGATTTTACGTATGGTTTCCTTTGAAGA
TGAAGCAGTGATCCCATTGATAGGGGAGGTATAAATGACGATGGGGGCTG
CGAAGAGGGACAAAGAGAAGATAGGAAGATAGGAAGGGAGAAGATTCCGC
GTGGAAAGAGAACAATATTGAAATTTTGTTGTCATTTACGATGAGCGGTG
TCGTGTATGTGCATGTGTAAGAGGGAGAGAAGGAGGAGGAGGACGGACGA
CAGTCAAACAGTGGCACGGAAGTAGTGTAAAAAAGAACACCGGAAGAGCC
CATGATGGGGAGGGAGGGAGGATGAGAGGGAGG

protein sequence of jgi.p|Nanoce1779_2|579621

>mRNA_2250-protein ID=mRNA_2250-protein|Name=jgi.p|Nanoce1779_2|579621|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MCSSTGFQRHLAEEERVDYARSLLCEGASLLVQGQAAHSAITTRHLHQCL
DKFDRALRLAPHLRAHAWERGFVLFYLNRFKEAADQFAWCTSLDPDDCEP
FLWRCLCLAKLQGWSAGVAVLDRFTGCDNRLCMMEVLAFYKGHTDLESVL
DHASDDCHSAARASFACALYFEARGRGREAETMALPLLSAVASVDCGGDT
YLRSLARIHMHHVRQGLMRDAPLQQNKRMNHRKVNGVLQLSSTPSSLSSS
SSSSTSSSSLESLASLASLPSITVGKEGGMGERGLGVISVYTTVSPPVCR
SPSKPALFRTALVKNSC*

mRNA from alignment at scaffold_4:1173649..1175951-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2250 ID=mRNA_2250|Name=jgi.p|Nanoce1779_2|579621|organism=Nannochloropsis oceanica|type=mRNA|length=2303bp|location=Sequence derived from alignment at scaffold_4:1173649..1175951- (Nannochloropsis oceanica)
ACAGCAGCAGCTACGACGACAATAACAACTCCGCACCACTACCAGAACCA
CCAGCAGCATGTGTAGTAGCACTGGCTTCCAGCGTCATCTGGCGGAAGAG
GAAAGGGTCGACTATGCCCGCAGCTTGCTATGCGAAGGGGCCTCCCTCCT
CGTTCAAGGCCAAGCGGCCCACAGTGCTATTACAACACGGCATCTCCACC
AATGCTTGGACAAATTCGACCGCGCCTTGCGCCTTGCTCCACACTTGCGA
GCTCACGCGGTAAGGATACTACTCAGGGGGCGGGATATGGGCCTATCCCC
GATTGACATGCTCACTATCCCCGCTTGGCGTTCGCCTGTCCCTGGTGAGA
TGTATCTGTTGAGTGGTATCACAGGATATGAGTCAGCCACTTAGGCAAGC
GCCCACGACACACTTCCCGCGCTCTGTCTCTCCTTTGTATACGTGTGCCT
TGCTCTCGTCCAACTCCAAGTCCGACATGCTGCCACAGCACCACTCATCC
TCCCTCCGTCCTTCCCTCCGTCCTTTCCTCCCTTTCCATACAGTGGGAAC
GCGGCTTCGTCCTCTTCTACCTCAACCGATTCAAGGAGGCCGCGGACCAG
TTCGCCTGGTGCACATCTCTAGACCCGGACGACTGCGAGCCTTTCCTCTG
GCGATGCCTGGTGGGTCGCGTTCTCCCTCCCTCCCTCTCCTATTCCTCCC
TCCCTCTCCTCCCTTTCCTTCCTTCCCTTTTATTCCCTCGCCTTTCTTCC
TCTGTACTCCCTCCTCTTCCTCCTTCCCTCCTCCAAGTGACTCGCGAGGC
TCCAAAGCAAGTGCTCGACAAAACTCACTTGCTACATCAAACCACCACAA
ACAAATAGCAACTCATCCCGCCCGCCCTCCCTCCCTTACTCCTCCTCCCC
TCCCGCAGTGCCTTGCCAAGCTTCAAGGTTGGTCTGCAGGGGTGGCTGTA
TTGGACCGTTTCACGGGTTGCGACAACCGGCTGTGTATGATGGAGGTGCT
GGCGTTCTACAAAGGACACACGGACTTAGAATCAGTTCTTGACCATGCCA
GTGATGATTGCCATTCGGCCGCCCGCGCCTCCTTTGCGTGTGCCCTGTAT
TTCGAGGCTAGGGGGAGGGGGAGGGAAGCAGAGACGATGGCCTTACCGCT
CTTGTCAGCGGTGGCGAGCGTTGATTGCGGGGGGGATACGTACCTGAGGT
CGCTGGCCCGGATACACATGCACCATGTCAGGCAAGGCTTAATGCGTGAC
GCTCCTTTGCAGCAGAACAAGCGGATGAACCACCGGAAGGTCAATGGAGT
GCTTCAGTTGAGTAGCACTCCCTCCTCACTCTCATCCTCGTCCTCGTCCT
CCACGTCGTCCTCGTCTTTGGAATCGTTGGCGTCACTGGCGTCATTGCCG
TCGATAACGGTGGGGAAGGAGGGAGGGATGGGGGAAAGAGGCTTGGGGGT
GATAAGTGTGTATACGACTGTATCACCACCTGTGTGTAGATCTCCCTCCA
AGCCCGCCTTGTTTCGGACTGCGCTAGTGAAGAACAGCTGCTGAATGGGG
CGCTAGCGGGTTGGAGTAGTAGATGTTTTAGGGGGTGGGTGATTTTGTAT
TGGGGATTGGGGAACGTAGGCTACATCCTCCGACGCCTACCTTGTTCCAG
ATGTGATATTTTGCGAACTGCTGGAGAGGGAGAGAGGGAGGTAGGGAGGT
TTGTGTTGGCGGGGGAGTGCAAATATATCGTGATGTACATCGTTATACAT
AGAGAGAGAAGGATGGAGAATAAGAGAGAACTGTGATGGCGTGGAGTATG
CCTATGCCTTCCTATCTCTTTTTGTGTCCTCGGGCGTCAGGGGCCCATAT
TTTGTGTGCGTGTGCACTTGCTTGTATGTATGAGGGGTGAGGAAGAGTGA
GAGGGTCGTGGGACGCGCGCTGGTGGCGGCGGGGGTAAAAGGAAATGTAG
AGAGAGGTAGCGAGAGATAGAGAGAAAGAAGGTGTGTGATTGCGATTTTA
CGTATGGTTTCCTTTGAAGATGAAGCAGTGATCCCATTGATAGGGGAGGT
ATAAATGACGATGGGGGCTGCGAAGAGGGACAAAGAGAAGATAGGAAGAT
AGGAAGGGAGAAGATTCCGCGTGGAAAGAGAACAATATTGAAATTTTGTT
GTCATTTACGATGAGCGGTGTCGTGTATGTGCATGTGTAAGAGGGAGAGA
AGGAGGAGGAGGACGGACGACAGTCAAACAGTGGCACGGAAGTAGTGTAA
AAAAGAACACCGGAAGAGCCCATGATGGGGAGGGAGGGAGGATGAGAGGG
AGG

Coding sequence (CDS) from alignment at scaffold_4:1173649..1175951-

>mRNA_2250 ID=mRNA_2250|Name=jgi.p|Nanoce1779_2|579621|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_4:1173649..1175951- (Nannochloropsis oceanica)
TGCCTTGCCAAGCTTCAAGGTTGGTCTGCAGGGGTGGCTGTATTGGACCG
TTTCACGGGTTGCGACAACCGGCTGTGTATGATGGAGGTGCTGGCGTTCT
ACAAAGGACACACGGACTTAGAATCAGTTCTTGACCATGCCAGTGATGAT
TGCCATTCGGCCGCCCGCGCCTCCTTTGCGTGTGCCCTGTATTTCGAGGC
TAGGGGGAGGGGGAGGGAAGCAGAGACGATGGCCTTACCGCTCTTGTCAG
CGGTGGCGAGCGTTGATTGCGGGGGGGATACGTACCTGAGGTCGCTGGCC
CGGATACACATGCACCATGTCAGGCAAGGCTTAATGCGTGACGCTCCTTT
GCAGCAGAACAAGCGGATGAACCACCGGAAGGTCAATGGAGTGCTTCAGT
TGAGTAGCACTCCCTCCTCACTCTCATCCTCGTCCTCGTCCTCCACGTCG
TCCTCGTCTTTGGAATCGTTGGCGTCACTGGCGTCATTGCCGTCGATAAC
GGTGGGGAAGGAGGGAGGGATGGGGGAAAGAGGCTTGGGGGTGATAAGTG
TGTATACGACTGTATCACCACCTGTGTGTAGATCTCCCTCCAAGCCCGCC
TTGTTTCGGACTGCGCTAGTGAAGAACAGCTGCTGATGGGAACGCGGCTT
CGTCCTCTTCTACCTCAACCGATTCAAGGAGGCCGCGGACCAGTTCGCCT
GGTGCACATCTCTAGACCCGGACGACTGCGAGCCTTTCCTCTGGCGATGC
CTGATGTGTAGTAGCACTGGCTTCCAGCGTCATCTGGCGGAAGAGGAAAG
GGTCGACTATGCCCGCAGCTTGCTATGCGAAGGGGCCTCCCTCCTCGTTC
AAGGCCAAGCGGCCCACAGTGCTATTACAACACGGCATCTCCACCAATGC
TTGGACAAATTCGACCGCGCCTTGCGCCTTGCTCCACACTTGCGAGCTCA
CGCGTGCCTTGCCAAGCTTCAAGGTTGGTCTGCAGGGGTGGCTGTATTGG
ACCGTTTCACGGGTTGCGACAACCGGCTGTGTATGATGGAGGTGCTGGCG
TTCTACAAAGGACACACGGACTTAGAATCAGTTCTTGACCATGCCAGTGA
TGATTGCCATTCGGCCGCCCGCGCCTCCTTTGCGTGTGCCCTGTATTTCG
AGGCTAGGGGGAGGGGGAGGGAAGCAGAGACGATGGCCTTACCGCTCTTG
TCAGCGGTGGCGAGCGTTGATTGCGGGGGGGATACGTACCTGAGGTCGCT
GGCCCGGATACACATGCACCATGTCAGGCAAGGCTTAATGCGTGACGCTC
CTTTGCAGCAGAACAAGCGGATGAACCACCGGAAGGTCAATGGAGTGCTT
CAGTTGAGTAGCACTCCCTCCTCACTCTCATCCTCGTCCTCGTCCTCCAC
GTCGTCCTCGTCTTTGGAATCGTTGGCGTCACTGGCGTCATTGCCGTCGA
TAACGGTGGGGAAGGAGGGAGGGATGGGGGAAAGAGGCTTGGGGGTGATA
AGTGTGTATACGACTGTATCACCACCTGTGTGTAGATCTCCCTCCAAGCC
CGCCTTGTTTCGGACTGCGCTAGTGAAGAACAGCTGCTGATGGGAACGCG
GCTTCGTCCTCTTCTACCTCAACCGATTCAAGGAGGCCGCGGACCAGTTC
GCCTGGTGCACATCTCTAGACCCGGACGACTGCGAGCCTTTCCTCTGGCG
ATGCCTGATGTGTAGTAGCACTGGCTTCCAGCGTCATCTGGCGGAAGAGG
AAAGGGTCGACTATGCCCGCAGCTTGCTATGCGAAGGGGCCTCCCTCCTC
GTTCAAGGCCAAGCGGCCCACAGTGCTATTACAACACGGCATCTCCACCA
ATGCTTGGACAAATTCGACCGCGCCTTGCGCCTTGCTCCACACTTGCGAG
CTCACGCGTGCCTTGCCAAGCTTCAAGGTTGGTCTGCAGGGGTGGCTGTA
TTGGACCGTTTCACGGGTTGCGACAACCGGCTGTGTATGATGGAGGTGCT
GGCGTTCTACAAAGGACACACGGACTTAGAATCAGTTCTTGACCATGCCA
GTGATGATTGCCATTCGGCCGCCCGCGCCTCCTTTGCGTGTGCCCTGTAT
TTCGAGGCTAGGGGGAGGGGGAGGGAAGCAGAGACGATGGCCTTACCGCT
CTTGTCAGCGGTGGCGAGCGTTGATTGCGGGGGGGATACGTACCTGAGGT
CGCTGGCCCGGATACACATGCACCATGTCAGGCAAGGCTTAATGCGTGAC
GCTCCTTTGCAGCAGAACAAGCGGATGAACCACCGGAAGGTCAATGGAGT
GCTTCAGTTGAGTAGCACTCCCTCCTCACTCTCATCCTCGTCCTCGTCCT
CCACGTCGTCCTCGTCTTTGGAATCGTTGGCGTCACTGGCGTCATTGCCG
TCGATAACGGTGGGGAAGGAGGGAGGGATGGGGGAAAGAGGCTTGGGGGT
GATAAGTGTGTATACGACTGTATCACCACCTGTGTGTAGATCTCCCTCCA
AGCCCGCCTTGTTTCGGACTGCGCTAGTGAAGAACAGCTGCTGATGGGAA
CGCGGCTTCGTCCTCTTCTACCTCAACCGATTCAAGGAGGCCGCGGACCA
GTTCGCCTGGTGCACATCTCTAGACCCGGACGACTGCGAGCCTTTCCTCT
GGCGATGCCTGATGTGTAGTAGCACTGGCTTCCAGCGTCATCTGGCGGAA
GAGGAAAGGGTCGACTATGCCCGCAGCTTGCTATGCGAAGGGGCCTCCCT
CCTCGTTCAAGGCCAAGCGGCCCACAGTGCTATTACAACACGGCATCTCC
ACCAATGCTTGGACAAATTCGACCGCGCCTTGCGCCTTGCTCCACACTTG
CGAGCTCACGCG

Synonyms

Publications