jgi.p|Nanoce1779_2|576598, mRNA_225 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576598
Unique Name	mRNA_225
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2487
Alignment location	scaffold_3:562952..565438 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576684
Track	FilteredModels2
ProteinId	576598

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:562952..565438 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576598	gene_225	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576598	mRNA_225-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_225	CDS_225	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:562952..565438+
coding sequence from alignment at scaffold_3:562952..565438+

mRNA sequence

>mRNA_225 ID=mRNA_225|Name=jgi.p|Nanoce1779_2|576598|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp
TCTCCTGGACGTCTCCTTCTTGCTGCGCAGCTATTTGCTGGAGCTGCGGT
TGTGGTTGCGGTTGTGGTTGCGGTTGCTGCTGCTTCTGCTGCTGCTCTAC
TTGCATTTCTCCCTGCAACTTCAGCTGGTGATTTTGCTGCTGCTGCTGCG
CCCGCGTCGGCCTTTGCTCTGTCTCCTTCTTATACACAGACTCCGGCTGC
AACGGAGCCTGATGCGGTCGTTCCTCGGTCTTCGTCTTCACATTCACTGA
TTGTGGCTGCTCCTTGGACAGCGGGAGCTCCGACGGCCCCTGCTTCACCT
TCTCCTCCACCATCTCTTCCCTTGCCATCGTCGTCGTCGTCTTTGTCCCC
GGCGGCCCCTCTACCTCCGTTGGCAGAGGTTGCGCCCCACTCACCACTAG
ATCCACCCGGTCCAGCACACCCGCCATAATAGCGGCAATCACCTCCCGCA
TCTTCCGCCGGTTCTTATACTGGCTCCGGATCTTACTCTTCGGCCGTCTA
CGAATTTCCCCGACCACAATTTCAGGCACTTCCGGTGGCTTCAGAGCTAC
CAACCCCCCCCTCCCCACCTCAACTTCACCACCTATTCCTCGTGTTCTAC
CTGATGGTGCGACAGCTGCTTCTGCTTTTATAACTCCCCTTCCTCCCTCT
GCGCCCTGATGATGCTGACGGTCCTTAATCCGTCCTTCCCATTCTGTATT
TTTCTTTCCCCCTCCTCCTATACTGCAGAGAGGCGCGGACGGAGGCAAGC
CTGGTTCAGCGAGGCCCGCAGCAAGTGCAGTGCTGCTGCTGATGCTGACG
ACAGTAGGAGCAGAAATAGTAGGCACGAGCGCCGGCACGGAGTCCGTGAG
TGAGGAGGAGGAGAGGGTGGTGATGGGAAAGATCTTGGGAGGATCGGAAG
CGGGGGGAGGAAACGGAGCCACTGGAATGAGAACTGAGGAGGTGAGGGGG
GGCGGCAGGGGTAACGGTGAAGTAGAAAATAAAGCACTTGCTGCTCCTGC
TCCTGCTGCCGCTACTCCTCCTGCTGCCGGCTCTTTCACTACCACCATGG
ACCTCTCCCTTCCCATCACTGGGGTTGTCGACATATCAACCTCCTCTTGT
TTTGTGCTCTCTACACCCTCAACTGCGGCCGCCTTCTTTTTTTTCTTTTT
CTGCTTCATCTTCTTCTTCGCTGCCTCAATCCCTACTGTCTCATCATCGG
CGCCGTTGCTTTGCACAGCAGCCAGTTCTACAGTCTTCTCGTCCTCCCCA
TCGCTCCTGACAGCCTCCTTCTCTGTTTTTGCCACAGCCATGGGCGTGCT
CTGTGATCCCATCAATGCAGGAGGGGGGGGGGGTGCTACTGGAGACAATG
GCACGGAAGAGGCCTCCTGCCCCCGCCCCTTCTTCAATATTTTCTCACCC
GCTGTTGCTTTGCTTGAGAGGAAGGTAGTGGGAAGGCGCAAGGGAGGGAA
GGCTTCAAAAGCCGGCGGAACCAGTGTCGATGCCAAAGACGGCTTCTTTA
CGACAACACCCCGCGGTCCCACTTCCGCCCATGACCCGTCATCATCTTTC
CCCTCCTCCATCACCATAGCCGTGACCAGACCGGCTGCCCTCTGCCCGCT
CTTCGCCGCGAAGGGCACTCTCACGGCCGACGACACCGAAGAACTTTGGA
CTGCCAAGTCTTCCTCGTCCTCTACCTTTCTCCCTCCCTCATGCAGCCCG
ATGTTATTCATCTGCCTTGCCGCCATCAACATTGATGCTTCGGCCTCGGC
CCTCAGCTGCTTTCCCAGCCTCTGTAATTCCTTCAAACGCTGCTGCTGCT
TCTTCTTTTTCTTGCCCGCAGTACAGGCCGCCGAAGCACTGGTGTAGCTG
CTGCCAATGCTGCCCCAATCGTCGTCGTTCAGCAGCTCCCTGGCCACGGA
GTCCGCACATGCCGCCTGCACCCGCTCCAAGGCCCGGCGCACCGCCTTCC
CCTCGTCCTGGTACACCCAGTGCACGGGCATAAGCAGGAGTCGCTCCATC
ATCACCTGTGCTCTGGACTCACGGGCACGTTCTAGCCCCTCCTGCTGATG
CTTCTCATCCTTTCTACATGGTCTTATCACTCTTTCTTCTTCCTCGCCAG
GCAGCTGTAGCTGCAGCTGCTGGAGCAGCAGCTGCTGAGCGGGACGTAGG
CCCTCGAAGAGCGCCGCCTGCTCTGCGGGCTGCAGCTTGGCGGCGAAGGC
TTGCAGGTGCTTGGTTTGTACGGCCACGGCCTTTAGCCCGGCCGAGACCC
GAGGCGCGGGCGCGGGACACCGGTGCACCCGCCGCCAGAAGGCCACCCAC
AGGGACAGCTCGAGCCGACTCACCAGCAAGTCTCGCAGCGGCACCGTTTC
CTTCTGCGCTTCCGTCCGCTCCTGCAGCCAGGGTGCTTCCGGCAAGACCA
CAGAAAAGCCGGCGGCGCTCGTACCAACCGCATTGGATGCAACTCCGGAC
GTCCCAATTCCACTCCCACTACCCGAGCCGCCCGCCA

protein sequence of jgi.p|Nanoce1779_2|576598

>mRNA_225-protein ID=mRNA_225-protein|Name=jgi.p|Nanoce1779_2|576598|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MLTTVGAEIVGTSAGTESVSEEEERVVMGKILGGSEAGGGNGATGMRTEE
VRGGGRGNGEVENKALAAPAPAAATPPAAGSFTTTMDLSLPITGVVDIST
SSCFVLSTPSTAAAFFFFFFCFIFFFAASIPTVSSSAPLLCTAASSTVFS
SSPSLLTASFSVFATAMGVLCDPINAGGGGGATGDNGTEEASCPRPFFNI
FSPAVALLERKVVGRRKGGKASKAGGTSVDAKDGFFTTTPRGPTSAHDPS
SSFPSSITIAVTRPAALCPLFAAKGTLTADDTEELWTAKSSSSSTFLPPS
CSPMLFICLAAINIDASASALSCFPSLCNSFKRCCCFFFFLPAVQAAEAL
V*

mRNA from alignment at scaffold_3:562952..565438+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_225 ID=mRNA_225|Name=jgi.p|Nanoce1779_2|576598|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at scaffold_3:562952..565438+ (Nannochloropsis oceanica)
TCTCCTGGACGTCTCCTTCTTGCTGCGCAGCTATTTGCTGGAGCTGCGGT
TGTGGTTGCGGTTGTGGTTGCGGTTGCTGCTGCTTCTGCTGCTGCTCTAC
TTGCATTTCTCCCTGCAACTTCAGCTGGTGATTTTGCTGCTGCTGCTGCG
CCCGCGTCGGCCTTTGCTCTGTCTCCTTCTTATACACAGACTCCGGCTGC
AACGGAGCCTGATGCGGTCGTTCCTCGGTCTTCGTCTTCACATTCACTGA
TTGTGGCTGCTCCTTGGACAGCGGGAGCTCCGACGGCCCCTGCTTCACCT
TCTCCTCCACCATCTCTTCCCTTGCCATCGTCGTCGTCGTCTTTGTCCCC
GGCGGCCCCTCTACCTCCGTTGGCAGAGGTTGCGCCCCACTCACCACTAG
ATCCACCCGGTCCAGCACACCCGCCATAATAGCGGCAATCACCTCCCGCA
TCTTCCGCCGGTTCTTATACTGGCTCCGGATCTTACTCTTCGGCCGTCTA
CGAATTTCCCCGACCACAATTTCAGGCACTTCCGGTGGCTTCAGAGCTAC
CAACCCCCCCCTCCCCACCTCAACTTCACCACCTATTCCTCGTGTTCTAC
CTGATGGTGCGACAGCTGCTTCTGCTTTTATAACTCCCCTTCCTCCCTCT
GCGCCCTGATGATGCTGACGGTCCTTAATCCGTCCTTCCCATTCTGTATT
TTTCTTTCCCCCTCCTCCTATACTGCAGAGAGGCGCGGACGGAGGCAAGC
CTGGTTCAGCGAGGCCCGCAGCAAGTGCAGTGCTGCTGCTGATGCTGACG
ACAGTAGGAGCAGAAATAGTAGGCACGAGCGCCGGCACGGAGTCCGTGAG
TGAGGAGGAGGAGAGGGTGGTGATGGGAAAGATCTTGGGAGGATCGGAAG
CGGGGGGAGGAAACGGAGCCACTGGAATGAGAACTGAGGAGGTGAGGGGG
GGCGGCAGGGGTAACGGTGAAGTAGAAAATAAAGCACTTGCTGCTCCTGC
TCCTGCTGCCGCTACTCCTCCTGCTGCCGGCTCTTTCACTACCACCATGG
ACCTCTCCCTTCCCATCACTGGGGTTGTCGACATATCAACCTCCTCTTGT
TTTGTGCTCTCTACACCCTCAACTGCGGCCGCCTTCTTTTTTTTCTTTTT
CTGCTTCATCTTCTTCTTCGCTGCCTCAATCCCTACTGTCTCATCATCGG
CGCCGTTGCTTTGCACAGCAGCCAGTTCTACAGTCTTCTCGTCCTCCCCA
TCGCTCCTGACAGCCTCCTTCTCTGTTTTTGCCACAGCCATGGGCGTGCT
CTGTGATCCCATCAATGCAGGAGGGGGGGGGGGTGCTACTGGAGACAATG
GCACGGAAGAGGCCTCCTGCCCCCGCCCCTTCTTCAATATTTTCTCACCC
GCTGTTGCTTTGCTTGAGAGGAAGGTAGTGGGAAGGCGCAAGGGAGGGAA
GGCTTCAAAAGCCGGCGGAACCAGTGTCGATGCCAAAGACGGCTTCTTTA
CGACAACACCCCGCGGTCCCACTTCCGCCCATGACCCGTCATCATCTTTC
CCCTCCTCCATCACCATAGCCGTGACCAGACCGGCTGCCCTCTGCCCGCT
CTTCGCCGCGAAGGGCACTCTCACGGCCGACGACACCGAAGAACTTTGGA
CTGCCAAGTCTTCCTCGTCCTCTACCTTTCTCCCTCCCTCATGCAGCCCG
ATGTTATTCATCTGCCTTGCCGCCATCAACATTGATGCTTCGGCCTCGGC
CCTCAGCTGCTTTCCCAGCCTCTGTAATTCCTTCAAACGCTGCTGCTGCT
TCTTCTTTTTCTTGCCCGCAGTACAGGCCGCCGAAGCACTGGTGTAGCTG
CTGCCAATGCTGCCCCAATCGTCGTCGTTCAGCAGCTCCCTGGCCACGGA
GTCCGCACATGCCGCCTGCACCCGCTCCAAGGCCCGGCGCACCGCCTTCC
CCTCGTCCTGGTACACCCAGTGCACGGGCATAAGCAGGAGTCGCTCCATC
ATCACCTGTGCTCTGGACTCACGGGCACGTTCTAGCCCCTCCTGCTGATG
CTTCTCATCCTTTCTACATGGTCTTATCACTCTTTCTTCTTCCTCGCCAG
GCAGCTGTAGCTGCAGCTGCTGGAGCAGCAGCTGCTGAGCGGGACGTAGG
CCCTCGAAGAGCGCCGCCTGCTCTGCGGGCTGCAGCTTGGCGGCGAAGGC
TTGCAGGTGCTTGGTTTGTACGGCCACGGCCTTTAGCCCGGCCGAGACCC
GAGGCGCGGGCGCGGGACACCGGTGCACCCGCCGCCAGAAGGCCACCCAC
AGGGACAGCTCGAGCCGACTCACCAGCAAGTCTCGCAGCGGCACCGTTTC
CTTCTGCGCTTCCGTCCGCTCCTGCAGCCAGGGTGCTTCCGGCAAGACCA
CAGAAAAGCCGGCGGCGCTCGTACCAACCGCATTGGATGCAACTCCGGAC
GTCCCAATTCCACTCCCACTACCCGAGCCGCCCGCCA

Coding sequence (CDS) from alignment at scaffold_3:562952..565438+

>mRNA_225 ID=mRNA_225|Name=jgi.p|Nanoce1779_2|576598|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_3:562952..565438+ (Nannochloropsis oceanica)
ATGCTGACGACAGTAGGAGCAGAAATAGTAGGCACGAGCGCCGGCACGGA
GTCCGTGAGTGAGGAGGAGGAGAGGGTGGTGATGGGAAAGATCTTGGGAG
GATCGGAAGCGGGGGGAGGAAACGGAGCCACTGGAATGAGAACTGAGGAG
GTGAGGGGGGGCGGCAGGGGTAACGGTGAAGTAGAAAATAAAGCACTTGC
TGCTCCTGCTCCTGCTGCCGCTACTCCTCCTGCTGCCGGCTCTTTCACTA
CCACCATGGACCTCTCCCTTCCCATCACTGGGGTTGTCGACATATCAACC
TCCTCTTGTTTTGTGCTCTCTACACCCTCAACTGCGGCCGCCTTCTTTTT
TTTCTTTTTCTGCTTCATCTTCTTCTTCGCTGCCTCAATCCCTACTGTCT
CATCATCGGCGCCGTTGCTTTGCACAGCAGCCAGTTCTACAGTCTTCTCG
TCCTCCCCATCGCTCCTGACAGCCTCCTTCTCTGTTTTTGCCACAGCCAT
GGGCGTGCTCTGTGATCCCATCAATGCAGGAGGGGGGGGGGGTGCTACTG
GAGACAATGGCACGGAAGAGGCCTCCTGCCCCCGCCCCTTCTTCAATATT
TTCTCACCCGCTGTTGCTTTGCTTGAGAGGAAGGTAGTGGGAAGGCGCAA
GGGAGGGAAGGCTTCAAAAGCCGGCGGAACCAGTGTCGATGCCAAAGACG
GCTTCTTTACGACAACACCCCGCGGTCCCACTTCCGCCCATGACCCGTCA
TCATCTTTCCCCTCCTCCATCACCATAGCCGTGACCAGACCGGCTGCCCT
CTGCCCGCTCTTCGCCGCGAAGGGCACTCTCACGGCCGACGACACCGAAG
AACTTTGGACTGCCAAGTCTTCCTCGTCCTCTACCTTTCTCCCTCCCTCA
TGCAGCCCGATGTTATTCATCTGCCTTGCCGCCATCAACATTGATGCTTC
GGCCTCGGCCCTCAGCTGCTTTCCCAGCCTCTGTAATTCCTTCAAACGCT
GCTGCTGCTTCTTCTTTTTCTTGCCCGCAGTACAGGCCGCCGAAGCACTG
GTGTAG

Synonyms

Publications