jgi.p|Nanoce1779_2|579615, mRNA_2249 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579615
Unique NamemRNA_2249
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length874
Alignment locationscaffold_4:1170594..1171510 +

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Properties
Property NameValue
TranscriptId579701
TrackFilteredModels2
ProteinId579615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1170594..1171510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579615gene_2249Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579615mRNA_2249-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2249CDS_2249Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2249 ID=mRNA_2249|Name=jgi.p|Nanoce1779_2|579615|organism=Nannochloropsis oceanica|type=mRNA|length=874bp
GGGAGGGCTTCCTGGGGAGGTGTATGAGCTGGAGAGGCAAACGACCGGCC
CTCACGCAGCCATCATGAAGTACAATTTGAACGAGGGACTGACGGAGGGG
CGTCACTGCGACGAGCTCCTCTCCCGCTACCTCGACGGTCTCGCCTACCA
CTTCCCTCTCGCCTTTCCTTCATCCCTCCCCCTCCCTTCTTCTCCCTCTT
TCCCTCCCCGTCTCCCTCCCTCCAATGCCTCCTCCCGACGGGCCGCGGCG
ACATGGGCCCGCGCCTTTTTGAGAGAACTGGGTCTCCTTGACGAAAACAG
ACTATCTCCTTCCCAATGCATCACACGCCGGCTTCTGTCCTCTTCCTTGC
GGTTGCTCTTGCTCCAGCAGGAGGAGGAAGTGGTGCCACGAGGAGTAGTA
ACGGCCGAAGCGCCGTTACAGGTCTTGGCGGTGATCGAGAGGATGGGAGG
AGGAAGGAGGGAGGGTGAGCGGGCGATGAGTCAGGAGGAGGCGCAGAAGG
AGGCGCAGGAGGAGAAGGAGGGAGATGAGGGTCAAATGATGCGAGTGAGC
AGCTGTGCGTCCATATTCCAAGAAGGGAGGGAGGGAGGGATGGCCGCCTT
ATCCTCCATCCTCCTCGCCCTCCCCCAGGTCTTCCTCCGAGATGCCATCA
TTGATTTGAGAGTATCGGGTCCCTTGCCTTCCCTGTGGGCCCGACGGGTG
ATTCGATCCACTCATGCCCTAGCTACCTTCCTGAGGGAGGGAGGGAGAAA
GGGAGAGAGGGAGAGATCCTTGAGTGGGTACCTGGAGGGACGGATGAAGC
GTTCTTGAGGGAGGCGGCGGCACTGGCTGTGGAAGTATTTGCAAAGACTG
TGCAGTGTGATTGTGTGGTAGGAG
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protein sequence of jgi.p|Nanoce1779_2|579615

>mRNA_2249-protein ID=mRNA_2249-protein|Name=jgi.p|Nanoce1779_2|579615|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MKYNLNEGLTEGRHCDELLSRYLDGLAYHFPLAFPSSLPLPSSPSFPPRL
PPSNASSRRAAATWARAFLRELGLLDENRLSPSQCITRRLLSSSLRLLLL
QQEEEVVPRGVVTAEAPLQVLAVIERMGGGRREGERAMSQEEAQKEAQEE
KEGDEGQMMRVSSCASIFQEGREGGMAALSSILLALPQVFLRDAIIDLRV
SGPLPSLWARRVIRSTHALATFLREGGRKGERERSLSGYLEGRMKRS*
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mRNA from alignment at scaffold_4:1170594..1171510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2249 ID=mRNA_2249|Name=jgi.p|Nanoce1779_2|579615|organism=Nannochloropsis oceanica|type=mRNA|length=917bp|location=Sequence derived from alignment at scaffold_4:1170594..1171510+ (Nannochloropsis oceanica)
GGGAGGGCTTCCTGGGGAGGTGTATGAGCTGGAGAGGCAAACGACCGGCC
CTCACGCAGCCATCATGAAGTACAATTTGAACGAGGGACTGACGGAGGGG
CGTCACTGCGACGAGCTCCTCTCCCGCTACCTCGACGGTCTCGCCTACCA
CTTCCCTCTCGCCTTTCCTTCATCCCTCCCCCTCCCTTCTTCTCCCTCTT
TCCCTCCCCGTCTCCCTCCCTCCAATGCCTCCTCCCGACGGGCCGCGGCG
ACATGGGCCCGCGCCTTTTTGAGAGAACTGGGTCTCCTTGACGAAAACAG
ACTATCTCCTTCCCAATGCATCACACGCCGGCTTCTGTCCTCTTCCTTGC
GGTTGCTCTTGCTCCAGCAGGAGGAGGAAGTGGTGCCACGAGGAGTAGTA
ACGGCCGAAGCGCCGTTACAGGTCTTGGCGGTGATCGAGAGGATGGGAGG
AGGAAGGAGGGAGGGTGAGCGGGCGATGAGTCAGGAGGAGGCGCAGAAGG
AGGCGCAGGAGGAGAAGGAGGGAGATGAGGGTCAAATGATGCGAGTGAGC
AGCTGTGCGTCCATATTCCAAGAAGGGAGGGAGGGAGGGATGGCCGCCTT
ATCCTCCATCCTCCTCGCCCTCCCCCAGGTCTTCCTCCGAGATGCCATCA
TTGATTTGAGAGTATCGGGTCCCTTGCCTTCCCTGTGGGCCCGACGGGTG
ATTCGATCCACTCATGCCCTAGCTACCTTCCTGAGGGAGGGAGGGAGAAA
GGGAGAGAGGGAGAGATCCTTGAGTGGGTACCTGGAGGGGAGGGGAGGGG
AGGGAGGGAGGGAGAGAAGGAGGGACGGAGGGACGGATGAAGCGTTCTTG
AGGGAGGCGGCGGCACTGGCTGTGGAAGTATTTGCAAAGACTGTGCAGTG
TGATTGTGTGGTAGGAG
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Coding sequence (CDS) from alignment at scaffold_4:1170594..1171510+

>mRNA_2249 ID=mRNA_2249|Name=jgi.p|Nanoce1779_2|579615|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_4:1170594..1171510+ (Nannochloropsis oceanica)
ATGAAGTACAATTTGAACGAGGGACTGACGGAGGGGCGTCACTGCGACGA
GCTCCTCTCCCGCTACCTCGACGGTCTCGCCTACCACTTCCCTCTCGCCT
TTCCTTCATCCCTCCCCCTCCCTTCTTCTCCCTCTTTCCCTCCCCGTCTC
CCTCCCTCCAATGCCTCCTCCCGACGGGCCGCGGCGACATGGGCCCGCGC
CTTTTTGAGAGAACTGGGTCTCCTTGACGAAAACAGACTATCTCCTTCCC
AATGCATCACACGCCGGCTTCTGTCCTCTTCCTTGCGGTTGCTCTTGCTC
CAGCAGGAGGAGGAAGTGGTGCCACGAGGAGTAGTAACGGCCGAAGCGCC
GTTACAGGTCTTGGCGGTGATCGAGAGGATGGGAGGAGGAAGGAGGGAGG
GTGAGCGGGCGATGAGTCAGGAGGAGGCGCAGAAGGAGGCGCAGGAGGAG
AAGGAGGGAGATGAGGGTCAAATGATGCGAGTGAGCAGCTGTGCGTCCAT
ATTCCAAGAAGGGAGGGAGGGAGGGATGGCCGCCTTATCCTCCATCCTCC
TCGCCCTCCCCCAGGTCTTCCTCCGAGATGCCATCATTGATTTGAGAGTA
TCGGGTCCCTTGCCTTCCCTGTGGGCCCGACGGGTGATTCGATCCACTCA
TGCCCTAGCTACCTTCCTGAGGGAGGGAGGGAGAAAGGGAGAGAGGGAGA
GATCCTTGAGTGGGTACCTGGAGGGACGGATGAAGCGTTCTTGAATGAAG
TACAATTTGAACGAGGGACTGACGGAGGGGCGTCACTGCGACGAGCTCCT
CTCCCGCTACCTCGACGGTCTCGCCTACCACTTCCCTCTCGCCTTTCCTT
CATCCCTCCCCCTCCCTTCTTCTCCCTCTTTCCCTCCCCGTCTCCCTCCC
TCCAATGCCTCCTCCCGACGGGCCGCGGCGACATGGGCCCGCGCCTTTTT
GAGAGAACTGGGTCTCCTTGACGAAAACAGACTATCTCCTTCCCAATGCA
TCACACGCCGGCTTCTGTCCTCTTCCTTGCGGTTGCTCTTGCTCCAGCAG
GAGGAGGAAGTGGTGCCACGAGGAGTAGTAACGGCCGAAGCGCCGTTACA
GGTCTTGGCGGTGATCGAGAGGATGGGAGGAGGAAGGAGGGAGGGTGAGC
GGGCGATGAGTCAGGAGGAGGCGCAGAAGGAGGCGCAGGAGGAGAAGGAG
GGAGATGAGGGTCAAATGATGCGAGTGAGCAGCTGTGCGTCCATATTCCA
AGAAGGGAGGGAGGGAGGGATGGCCGCCTTATCCTCCATCCTCCTCGCCC
TCCCCCAGGTCTTCCTCCGAGATGCCATCATTGATTTGAGAGTATCGGGT
CCCTTGCCTTCCCTGTGGGCCCGACGGGTGATTCGATCCACTCATGCCCT
AGCTACCTTCCTGAGGGAGGGAGGGAGAAAGGGAGAGAGGGAGAGATCCT
TGAGTGGGTACCTGGAGGGACGGATGAAGCGTTCTTGA
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Synonyms
Publications