jgi.p|Nanoce1779_2|579610, mRNA_2248 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579610
Unique Name	mRNA_2248
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1892
Alignment location	scaffold_4:1165669..1167560 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579696
Track	FilteredModels2
ProteinId	579610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1165669..1167560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579610	gene_2248	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579610	mRNA_2248-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2248	CDS_2248	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1165669..1167560+
coding sequence from alignment at scaffold_4:1165669..1167560+

mRNA sequence

>mRNA_2248 ID=mRNA_2248|Name=jgi.p|Nanoce1779_2|579610|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp
AAACCACAGCCTCCTCCCCAACCCCGTGCCACAAGCCAACAAGACCAAAT
ATGTGGGCACGCAAGCTCACCCGTCCCTTCACGGCTGCTGGAGCCGTACG
ATTACAAGAAGCAGGAGCAGGAAGTGGACTATCGGGTCTTGGAGGGGGTA
TGTACTAGATTTACGTTGCCTCTCCGTGTGCTGATCTTCCTCTCCCTCAA
CCCCACTCGATCCCTGTAACCCACACCCACCACTCCACGCACGCGTTACA
GTAGCATCTTTTTAAGCACTAATTAGTGTAACTTGATATGATTCCCTTCT
TGCCACGATTACATATACAATTGCTCGCTGTACATGGATAATTAGTTTTC
AATCTTTTCCTCTACCCTCCCTCACTCTCATGTGTCTGGACCATGAAAGA
GCGCTATCGCACTCGCAAGGGCACACACGTATCATCTGCGTAACATTCAT
GACATGACGTCCCTCAAACCTAAGACGTTTCCAGGCATGTCCACAAAAAA
TAAATGACGATTCTCGCGTTAGATTTGGTTGGGCGGCTTCCATGCACGCC
CTTGGCCTGATGTCAATATGGCGTGGCCCTCGTGGCTGTCCTCCAGCAAA
TGTGAATATGATATCCTCTTCTGCCGTACACAGTCTGCAATGCCATCCTC
TTGAATGCAGGCCTTCGACTGAGCCCCTCTCGGGCCCCCTTTGACGCTCA
CTCTTTCCTTCTGTCCCTCCCTCCTTCCCCCCTCCTTTCAGCCACCCGCG
CCTTCCAAGGCGTCGCCAGCTTGAAAGGAAAGCACTTGATGAACATCGAC
GAGCTCACGGACAGCGAGCTCCGGGGCCTACTCTCCCTCTCCGCCCAACT
CAAAGCCACGTACAAGTCCTCCTCCCCTTCCTCCCTCCCTCGCCCCCTGA
CGGGAACATCCGTGAGCATGATCTTCCAAAAACGGAGCACGCGTACCCGT
GTCTCCACAGAGACGGGCATGGCTATGCTAGGCGGACATGCCCTTTTTCT
TGGTCCACAAGACATTCAATTAGGGGTGAACGAGTCCTTGCGTGATACGG
CGGCTGTCCTCTCTCGCTTCAACTCCCTCATCCTGGCCCGAGTGTTTGCG
CATCCCGACGTGCAAATGCTGGCAAAGCACTCCTCGGTGCCTGTGATCAA
TGCTCTGTCCGACTTGTACCACCCACTGCAAGCCCTGGCCGATTTGCTGA
CCCTGGAGGAGCACTTCGGGGAGGGCGGGATGGAGGGCAAGGTCCTGGCG
TGGGTCGGTGACGGGAATAACGTCCTCCACGACCTGGCCATGGGCGCAGT
GCGGCTGGGAATGCATGTGCGGGTGGCCTGCCCGGAAGGGTACGAGCCAG
ACGCGGAGGTAATGAAGAAGGTGCAAGGCCACGCGCAGAGGAAGGGAGGG
TCGTTGATGATGACACGAGACCCAATGGCGGCCGTGGAGGGGGCGAATGT
GGTGGTGACCGATACCTGGGTGAGTATGGGCCAGGAAGAGGAGTACGAGA
AGCGGATGCGGGACTTTGAGGGTTTTCAGGTCAACAAAGCCATGATGGAG
AAGGGGGCAGGGAAGGAGGGAGGGAAAGCAGGGTGCGTGTTTTTGCATTG
TCTCCCTCGGCATCCGGAGGAGGTGACGGACGAGGTGTTTTATGATGAGG
AAAGAAGTCTGGTCTTCCCCGAGGCGGAGAATCGGATGTGGACGGTCATG
GCCGTCATGCTTTCGTTGGTGGGGAAGTAGGAAAAAGGATTTAGGGAGGA
AGGCAGGGAGGGGGGACGGGAGGGGAGGAATACGGTGCGGACGGTTATAT
GTTTCGTGGATGGGAAATAAGAAAGGGAGGGGAAAAGGGAGGAGGTAGAG
ATGAGGAAGAGGACACGAAGAATAAAATTAAATGAAGGAGCC

protein sequence of jgi.p|Nanoce1779_2|579610

>mRNA_2248-protein ID=mRNA_2248-protein|Name=jgi.p|Nanoce1779_2|579610|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MNIDELTDSELRGLLSLSAQLKATYKSSSPSSLPRPLTGTSVSMIFQKRS
TRTRVSTETGMAMLGGHALFLGPQDIQLGVNESLRDTAAVLSRFNSLILA
RVFAHPDVQMLAKHSSVPVINALSDLYHPLQALADLLTLEEHFGEGGMEG
KVLAWVGDGNNVLHDLAMGAVRLGMHVRVACPEGYEPDAEVMKKVQGHAQ
RKGGSLMMTRDPMAAVEGANVVVTDTWVSMGQEEEYEKRMRDFEGFQVNK
AMMEKGAGKEGGKAGCVFLHCLPRHPEEVTDEVFYDEERSLVFPEAENRM
WTVMAVMLSLVGK*

mRNA from alignment at scaffold_4:1165669..1167560+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2248 ID=mRNA_2248|Name=jgi.p|Nanoce1779_2|579610|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp|location=Sequence derived from alignment at scaffold_4:1165669..1167560+ (Nannochloropsis oceanica)
AAACCACAGCCTCCTCCCCAACCCCGTGCCACAAGCCAACAAGACCAAAT
ATGTGGGCACGCAAGCTCACCCGTCCCTTCACGGCTGCTGGAGCCGTACG
ATTACAAGAAGCAGGAGCAGGAAGTGGACTATCGGGTCTTGGAGGGGGTA
TGTACTAGATTTACGTTGCCTCTCCGTGTGCTGATCTTCCTCTCCCTCAA
CCCCACTCGATCCCTGTAACCCACACCCACCACTCCACGCACGCGTTACA
GTAGCATCTTTTTAAGCACTAATTAGTGTAACTTGATATGATTCCCTTCT
TGCCACGATTACATATACAATTGCTCGCTGTACATGGATAATTAGTTTTC
AATCTTTTCCTCTACCCTCCCTCACTCTCATGTGTCTGGACCATGAAAGA
GCGCTATCGCACTCGCAAGGGCACACACGTATCATCTGCGTAACATTCAT
GACATGACGTCCCTCAAACCTAAGACGTTTCCAGGCATGTCCACAAAAAA
TAAATGACGATTCTCGCGTTAGATTTGGTTGGGCGGCTTCCATGCACGCC
CTTGGCCTGATGTCAATATGGCGTGGCCCTCGTGGCTGTCCTCCAGCAAA
TGTGAATATGATATCCTCTTCTGCCGTACACAGTCTGCAATGCCATCCTC
TTGAATGCAGGCCTTCGACTGAGCCCCTCTCGGGCCCCCTTTGACGCTCA
CTCTTTCCTTCTGTCCCTCCCTCCTTCCCCCCTCCTTTCAGCCACCCGCG
CCTTCCAAGGCGTCGCCAGCTTGAAAGGAAAGCACTTGATGAACATCGAC
GAGCTCACGGACAGCGAGCTCCGGGGCCTACTCTCCCTCTCCGCCCAACT
CAAAGCCACGTACAAGTCCTCCTCCCCTTCCTCCCTCCCTCGCCCCCTGA
CGGGAACATCCGTGAGCATGATCTTCCAAAAACGGAGCACGCGTACCCGT
GTCTCCACAGAGACGGGCATGGCTATGCTAGGCGGACATGCCCTTTTTCT
TGGTCCACAAGACATTCAATTAGGGGTGAACGAGTCCTTGCGTGATACGG
CGGCTGTCCTCTCTCGCTTCAACTCCCTCATCCTGGCCCGAGTGTTTGCG
CATCCCGACGTGCAAATGCTGGCAAAGCACTCCTCGGTGCCTGTGATCAA
TGCTCTGTCCGACTTGTACCACCCACTGCAAGCCCTGGCCGATTTGCTGA
CCCTGGAGGAGCACTTCGGGGAGGGCGGGATGGAGGGCAAGGTCCTGGCG
TGGGTCGGTGACGGGAATAACGTCCTCCACGACCTGGCCATGGGCGCAGT
GCGGCTGGGAATGCATGTGCGGGTGGCCTGCCCGGAAGGGTACGAGCCAG
ACGCGGAGGTAATGAAGAAGGTGCAAGGCCACGCGCAGAGGAAGGGAGGG
TCGTTGATGATGACACGAGACCCAATGGCGGCCGTGGAGGGGGCGAATGT
GGTGGTGACCGATACCTGGGTGAGTATGGGCCAGGAAGAGGAGTACGAGA
AGCGGATGCGGGACTTTGAGGGTTTTCAGGTCAACAAAGCCATGATGGAG
AAGGGGGCAGGGAAGGAGGGAGGGAAAGCAGGGTGCGTGTTTTTGCATTG
TCTCCCTCGGCATCCGGAGGAGGTGACGGACGAGGTGTTTTATGATGAGG
AAAGAAGTCTGGTCTTCCCCGAGGCGGAGAATCGGATGTGGACGGTCATG
GCCGTCATGCTTTCGTTGGTGGGGAAGTAGGAAAAAGGATTTAGGGAGGA
AGGCAGGGAGGGGGGACGGGAGGGGAGGAATACGGTGCGGACGGTTATAT
GTTTCGTGGATGGGAAATAAGAAAGGGAGGGGAAAAGGGAGGAGGTAGAG
ATGAGGAAGAGGACACGAAGAATAAAATTAAATGAAGGAGCC

Coding sequence (CDS) from alignment at scaffold_4:1165669..1167560+

>mRNA_2248 ID=mRNA_2248|Name=jgi.p|Nanoce1779_2|579610|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_4:1165669..1167560+ (Nannochloropsis oceanica)
ATGAACATCGACGAGCTCACGGACAGCGAGCTCCGGGGCCTACTCTCCCT
CTCCGCCCAACTCAAAGCCACGTACAAGTCCTCCTCCCCTTCCTCCCTCC
CTCGCCCCCTGACGGGAACATCCGTGAGCATGATCTTCCAAAAACGGAGC
ACGCGTACCCGTGTCTCCACAGAGACGGGCATGGCTATGCTAGGCGGACA
TGCCCTTTTTCTTGGTCCACAAGACATTCAATTAGGGGTGAACGAGTCCT
TGCGTGATACGGCGGCTGTCCTCTCTCGCTTCAACTCCCTCATCCTGGCC
CGAGTGTTTGCGCATCCCGACGTGCAAATGCTGGCAAAGCACTCCTCGGT
GCCTGTGATCAATGCTCTGTCCGACTTGTACCACCCACTGCAAGCCCTGG
CCGATTTGCTGACCCTGGAGGAGCACTTCGGGGAGGGCGGGATGGAGGGC
AAGGTCCTGGCGTGGGTCGGTGACGGGAATAACGTCCTCCACGACCTGGC
CATGGGCGCAGTGCGGCTGGGAATGCATGTGCGGGTGGCCTGCCCGGAAG
GGTACGAGCCAGACGCGGAGGTAATGAAGAAGGTGCAAGGCCACGCGCAG
AGGAAGGGAGGGTCGTTGATGATGACACGAGACCCAATGGCGGCCGTGGA
GGGGGCGAATGTGGTGGTGACCGATACCTGGGTGAGTATGGGCCAGGAAG
AGGAGTACGAGAAGCGGATGCGGGACTTTGAGGGTTTTCAGGTCAACAAA
GCCATGATGGAGAAGGGGGCAGGGAAGGAGGGAGGGAAAGCAGGGTGCGT
GTTTTTGCATTGTCTCCCTCGGCATCCGGAGGAGGTGACGGACGAGGTGT
TTTATGATGAGGAAAGAAGTCTGGTCTTCCCCGAGGCGGAGAATCGGATG
TGGACGGTCATGGCCGTCATGCTTTCGTTGGTGGGGAAGTAG

Synonyms

Publications