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Properties
| Property Name | Value |
|---|
| TranscriptId | 579694 |
| Track | FilteredModels2 |
| ProteinId | 579608 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1163054..1165341 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2246 ID=mRNA_2246|Name=jgi.p|Nanoce1779_2|579608|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp
ACAGGTGCAGCATCAGCCATGTGCGAGAGAGAAGCCTGCAGAAGCATCCC
CACTGCCTGAGGTTTGACTTTATCAAGAAGCGGTCGCTATTGAGGCCCCG
ACAATGGCGCCCAGCACTTTTTCCTTCTCCTCCGCCTCTACCCCATCCTC
TGGCGAACCCCCGCCCTGGTCGCCCTTAACCTCCCTTGTCCCTTCCGTCT
TATTTGCCATCGTCCTCCTTTACGGCCTCCATCATCTGCTCCGTTTTCTC
TTCAAAACCTTGTCCCCGCATCCCACCCCTGCCTTTAGCAGCAGCCGCAG
CAGCAGCATCATAAGTGATGGCCAAGCACACGTTCACTGCAATCGCGATA
ACTCTTCCGACCTCATGCGCGCCCTCGACGACATCGACTCCCCCTCCCAG
ACCATTCCTCCCTCCTCCTTATACTCTCCCTCTACGCCCCCAAGCCCCTT
CCCGTCCAACGTCCATTTGCCTTGCTCCCACTGGGCAGAAACTGGGGGCA
GGCAGTACATGGAAGATCGCCTCTCGTTTCGAGGGAGACTGGAAGGGAGG
AATGACGCGTCTTTGTACGCTGTTTTTGACGGGCACGGTGGTGCCTTGGC
GAGTGAGTTTTGTGCGCAGGAGCTGCCACGATATGTGGTGGGGAGTGAGG
AGGGGTGGGAGGTGGCGACGAAAGCGGCCTTAAGAGACGCCTTCATGAAG
ACAGATGCAGCGTTTGTCAAGGCGACTGAGGGGACGAATCGATTGGATGG
GACGACGGCCTTGGTGGCTTTGATAAGGGGAACTCAATTGTTCGTGGCCA
ACGCCGGGGACAGCAGGGCTATTTTGGTGCAGAGAGGAGCGAGGGTCGTG
CCTCTGAGTCGTGACCACAAGCCGAGTCTACCGGACGAATTGCAGAGGAT
AACGGAAATGGGTGGCAAAGTCATATTTTGGGGTCGGTGGAGGGTGGAGG
GGATTCTGGCGGTGTCCCGAGCTATTGGGGACATGCATTTGAAGCCTTAC
GTGACTCCTGAGCCGGAGGTGACGGAGTGGGAGGTTGCGGAGGATGACTT
ATTTTTGATTCTCGCAAGTGATGGTATATGGGATGTGCTTTCGAATGAGA
TGGTGGCTGCATTTGTGGTCAACCACAGTCACGACGTCAAGCTGGCAGCC
AAGAGACTCTGTCGCGAGGCCTCTCTGAATGGCTCCATGGACAATTTATG
TGCTGTCGTTATTGACCTGCGAGAGATCCGACGGAGGAGGGGGAACAGCA
TCGACAGATTAAGTTAGCAGCAGCCTTCTTCCTTTCCCCCGTCCTGATCT
ATCTCCTCTCGAAAGAGGGGAGGGAGGAGGTTTGAAAGATTGAGCTTCAA
GGTATCAAGACAACAGATAGAATAAAATGGGAATTTAAAAAAAGGGTGCA
GAGGAGCGAGTGTGTTTTGTAGAAAGATTGTGAATACATGCAGAAGGACG
TCGTGCGAGCGTGCTGAAGGGTAGAGTCTATTGAGTGATAGGGATAGAGA
GAGAGACATTGAGTGGCCAGCACAGCCAGCACGTCTGGAAGGGGAACCTG
ATATCGTTTTCCTTTGCACACCTTTTATTCAAATCAAAATCTTTGAAATC
AGGAAAATATGAGATAAATAAAGAAGAAAAAAGATGTCCGCATTCTTTGG
GAGCTCTCTTGGGACTGATAAATTGGTACACTTTGTTGTGTGCGGCCGCG
ATTAAAGTAAGGACAACA back to topprotein sequence of jgi.p|Nanoce1779_2|579608 >mRNA_2246-protein ID=mRNA_2246-protein|Name=jgi.p|Nanoce1779_2|579608|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAPSTFSFSSASTPSSGEPPPWSPLTSLVPSVLFAIVLLYGLHHLLRFLF
KTLSPHPTPAFSSSRSSSIISDGQAHVHCNRDNSSDLMRALDDIDSPSQT
IPPSSLYSPSTPPSPFPSNVHLPCSHWAETGGRQYMEDRLSFRGRLEGRN
DASLYAVFDGHGGALASEFCAQELPRYVVGSEEGWEVATKAALRDAFMKT
DAAFVKATEGTNRLDGTTALVALIRGTQLFVANAGDSRAILVQRGARVVP
LSRDHKPSLPDELQRITEMGGKVIFWGRWRVEGILAVSRAIGDMHLKPYV
TPEPEVTEWEVAEDDLFLILASDGIWDVLSNEMVAAFVVNHSHDVKLAAK
RLCREASLNGSMDNLCAVVIDLREIRRRRGNSIDRLS* back to topmRNA from alignment at scaffold_4:1163054..1165341+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2246 ID=mRNA_2246|Name=jgi.p|Nanoce1779_2|579608|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp|location=Sequence derived from alignment at scaffold_4:1163054..1165341+ (Nannochloropsis oceanica)
ACAGGTGCAGCATCAGCCATGTGCGAGAGAGAAGCCTGCAGAAGCATCCC
CACTGCCTGAGGTTTGACTTTATCAAGAAGCGGTCGCTATTGAGGCCCCG
ACAATGGCGCCCAGGTAAGCCGCAAGCAAAGGAGCGAGTGGGGCGGGGAA
TGGGGGCGGATCAGACCGACGCCAAACATTTCTAAACAGACTTGTATAAA
CATGCCCACTCATGCGCCTTCATGAGCATGGGATATTAAGGCCAGGGATT
ATGCTAGAAGCCGCTTTGTGCCATGAAATGTCGTCGTCCCTGTGTTTTAA
GTCATGCGCGTCGCGCTGGTGAAGCCTCTGATCACACATGTCTGCCGCCC
CAATAGACATGTCATGTCATGTGCGCATAGATCTCAACCCCAACGCCATA
GCATATACCATATCATCGTTCTTATTCAAACCCCCGACGCTCAACCCTCG
CGAACCACCACAACAGCACTTTTTCCTTCTCCTCCGCCTCTACCCCATCC
TCTGGCGAACCCCCGCCCTGGTCGCCCTTAACCTCCCTTGTCCCTTCCGT
CTTATTTGCCATCGTCCTCCTTTACGGCCTCCATCATCTGCTCCGTTTTC
TCTTCAAAACCTTGTCCCCGCATCCCACCCCTGCCTTTAGCAGCAGCCGC
AGCAGCAGCATCATAAGTGATGGCCAAGCACACGTTCACTGCAATCGCGA
TAACTCTTCCGACCTCATGCGCGCCCTCGACGACATCGACTCCCCCTCCC
AGACCATTCCTCCCTCCTCCTTATACTCTCCCTCTACGCCCCCAAGCCCC
TTCCCGTCCAACGTCCATTTGCCTTGCTCCCACTGGGCAGAAACTGGGGG
CAGGCAGTACATGGAAGATCGCCTCTCGTTTCGAGGGAGACTGGAAGGGA
GGAATGACGCGTCTTTGTACGCTGTTTTTGACGGGCACGGTGGTGCCTTG
GCGAGTGAGTTTTGTGCGCAGGAGCTGCCACGATATGTGGTGGGGAGTGA
GGAGGGGTGGGAGGTGGCGACGAAAGCGGCCTTAAGAGACGCCTTCATGA
AGACAGATGCAGCGTTTGTCAAGGCGACTGAGGGGACGAATCGATTGGAT
GGGACGACGGCCTTGGTGGCTTTGATAAGGGGAACTCAATTGTTCGTGGC
CAACGCCGGGGACAGCAGGGCTATTTTGGTGCAGAGAGGAGCGAGGGTCG
TGCCTCTGAGTCGTGACCACAAGCCGAGTCTACCGGACGAATTGCAGAGG
ATAACGGAAATGGGTGGCAAAGTCATATTTTGGGGTCGGTGGAGGGTGGA
GGGGATTCTGGCGGTGTCCCGAGCTATTGGGGACATGCATTTGAAGCCTT
ACGTGACTCCTGAGCCGGAGGTGACGGAGTGGGAGGTTGCGGAGGATGAC
TTATTTTTGATTCTCGCAAGTGATGGTACGTGTTGCATTGGCCTTCTCTC
TTTCCCTCTCTTTATGTCTCCCTTCGTTGGTTAATTGATTGCGGTATGAA
GGTTCGGGCCTTAAATTTTATGTCACTTTTCAACCACTTATTTGCTCATG
TCTTTCTTTGCCAGACACATTATTAATTCATTTGTAGGTAGATTTATTCA
CATATCCACACGATTATTCATTCACTCACTTGTTTTACTGCAGGTATATG
GGATGTGCTTTCGAATGAGATGGTGGCTGCATTTGTGGTCAACCACAGTC
ACGACGTCAAGCTGGCAGCCAAGAGACTCTGTCGCGAGGCCTCTCTGAAT
GGCTCCATGGACAATTTATGTGCTGTCGTTATTGACCTGCGAGAGATCCG
ACGGAGGAGGGGGAACAGCATCGACAGATTAAGTTAGCAGCAGCCTTCTT
CCTTTCCCCCGTCCTGATCTATCTCCTCTCGAAAGAGGGGAGGGAGGAGG
TTTGAAAGATTGAGCTTCAAGGTATCAAGACAACAGATAGAATAAAATGG
GAATTTAAAAAAAGGGTGCAGAGGAGCGAGTGTGTTTTGTAGAAAGATTG
TGAATACATGCAGAAGGACGTCGTGCGAGCGTGCTGAAGGGTAGAGTCTA
TTGAGTGATAGGGATAGAGAGAGAGACATTGAGTGGCCAGCACAGCCAGC
ACGTCTGGAAGGGGAACCTGATATCGTTTTCCTTTGCACACCTTTTATTC
AAATCAAAATCTTTGAAATCAGGAAAATATGAGATAAATAAAGAAGAAAA
AAGATGTCCGCATTCTTTGGGAGCTCTCTTGGGACTGATAAATTGGTACA
CTTTGTTGTGTGCGGCCGCGATTAAAGTAAGGACAACA back to topCoding sequence (CDS) from alignment at scaffold_4:1163054..1165341+ >mRNA_2246 ID=mRNA_2246|Name=jgi.p|Nanoce1779_2|579608|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_4:1163054..1165341+ (Nannochloropsis oceanica)
ATGGCGCCCAGCACTTTTTCCTTCTCCTCCGCCTCTACCCCATCCTCTGG
CGAACCCCCGCCCTGGTCGCCCTTAACCTCCCTTGTCCCTTCCGTCTTAT
TTGCCATCGTCCTCCTTTACGGCCTCCATCATCTGCTCCGTTTTCTCTTC
AAAACCTTGTCCCCGCATCCCACCCCTGCCTTTAGCAGCAGCCGCAGCAG
CAGCATCATAAGTGATGGCCAAGCACACGTTCACTGCAATCGCGATAACT
CTTCCGACCTCATGCGCGCCCTCGACGACATCGACTCCCCCTCCCAGACC
ATTCCTCCCTCCTCCTTATACTCTCCCTCTACGCCCCCAAGCCCCTTCCC
GTCCAACGTCCATTTGCCTTGCTCCCACTGGGCAGAAACTGGGGGCAGGC
AGTACATGGAAGATCGCCTCTCGTTTCGAGGGAGACTGGAAGGGAGGAAT
GACGCGTCTTTGTACGCTGTTTTTGACGGGCACGGTGGTGCCTTGGCGAG
TGAGTTTTGTGCGCAGGAGCTGCCACGATATGTGGTGGGGAGTGAGGAGG
GGTGGGAGGTGGCGACGAAAGCGGCCTTAAGAGACGCCTTCATGAAGACA
GATGCAGCGTTTGTCAAGGCGACTGAGGGGACGAATCGATTGGATGGGAC
GACGGCCTTGGTGGCTTTGATAAGGGGAACTCAATTGTTCGTGGCCAACG
CCGGGGACAGCAGGGCTATTTTGGTGCAGAGAGGAGCGAGGGTCGTGCCT
CTGAGTCGTGACCACAAGCCGAGTCTACCGGACGAATTGCAGAGGATAAC
GGAAATGGGTGGCAAAGTCATATTTTGGGGTCGGTGGAGGGTGGAGGGGA
TTCTGGCGGTGTCCCGAGCTATTGGGGACATGCATTTGAAGCCTTACGTG
ACTCCTGAGCCGGAGGTGACGGAGTGGGAGGTTGCGGAGGATGACTTATT
TTTGATTCTCGCAAGTGATGGTATATGGGATGTGCTTTCGAATGAGATGG
TGGCTGCATTTGTGGTCAACCACAGTCACGACGTCAAGCTGGCAGCCAAG
AGACTCTGTCGCGAGGCCTCTCTGAATGGCTCCATGGACAATTTATGTGC
TGTCGTTATTGACCTGCGAGAGATCCGACGGAGGAGGGGGAACAGCATCG
ACAGATTAAGTTAGATGGCGCCCAGCACTTTTTCCTTCTCCTCCGCCTCT
ACCCCATCCTCTGGCGAACCCCCGCCCTGGTCGCCCTTAACCTCCCTTGT
CCCTTCCGTCTTATTTGCCATCGTCCTCCTTTACGGCCTCCATCATCTGC
TCCGTTTTCTCTTCAAAACCTTGTCCCCGCATCCCACCCCTGCCTTTAGC
AGCAGCCGCAGCAGCAGCATCATAAGTGATGGCCAAGCACACGTTCACTG
CAATCGCGATAACTCTTCCGACCTCATGCGCGCCCTCGACGACATCGACT
CCCCCTCCCAGACCATTCCTCCCTCCTCCTTATACTCTCCCTCTACGCCC
CCAAGCCCCTTCCCGTCCAACGTCCATTTGCCTTGCTCCCACTGGGCAGA
AACTGGGGGCAGGCAGTACATGGAAGATCGCCTCTCGTTTCGAGGGAGAC
TGGAAGGGAGGAATGACGCGTCTTTGTACGCTGTTTTTGACGGGCACGGT
GGTGCCTTGGCGAGTGAGTTTTGTGCGCAGGAGCTGCCACGATATGTGGT
GGGGAGTGAGGAGGGGTGGGAGGTGGCGACGAAAGCGGCCTTAAGAGACG
CCTTCATGAAGACAGATGCAGCGTTTGTCAAGGCGACTGAGGGGACGAAT
CGATTGGATGGGACGACGGCCTTGGTGGCTTTGATAAGGGGAACTCAATT
GTTCGTGGCCAACGCCGGGGACAGCAGGGCTATTTTGGTGCAGAGAGGAG
CGAGGGTCGTGCCTCTGAGTCGTGACCACAAGCCGAGTCTACCGGACGAA
TTGCAGAGGATAACGGAAATGGGTGGCAAAGTCATATTTTGGGGTCGGTG
GAGGGTGGAGGGGATTCTGGCGGTGTCCCGAGCTATTGGGGACATGCATT
TGAAGCCTTACGTGACTCCTGAGCCGGAGGTGACGGAGTGGGAGGTTGCG
GAGGATGACTTATTTTTGATTCTCGCAAGTGATGGTATATGGGATGTGCT
TTCGAATGAGATGGTGGCTGCATTTGTGGTCAACCACAGTCACGACGTCA
AGCTGGCAGCCAAGAGACTCTGTCGCGAGGCCTCTCTGAATGGCTCCATG
GACAATTTATGTGCTGTCGTTATTGACCTGCGAGAGATCCGACGGAGGAG
GGGGAACAGCATCGACAGATTAAGTTAGATGGCGCCCAGCACTTTTTCCT
TCTCCTCCGCCTCTACCCCATCCTCTGGCGAACCCCCGCCCTGGTCGCCC
TTAACCTCCCTTGTCCCTTCCGTCTTATTTGCCATCGTCCTCCTTTACGG
CCTCCATCATCTGCTCCGTTTTCTCTTCAAAACCTTGTCCCCGCATCCCA
CCCCTGCCTTTAGCAGCAGCCGCAGCAGCAGCATCATAAGTGATGGCCAA
GCACACGTTCACTGCAATCGCGATAACTCTTCCGACCTCATGCGCGCCCT
CGACGACATCGACTCCCCCTCCCAGACCATTCCTCCCTCCTCCTTATACT
CTCCCTCTACGCCCCCAAGCCCCTTCCCGTCCAACGTCCATTTGCCTTGC
TCCCACTGGGCAGAAACTGGGGGCAGGCAGTACATGGAAGATCGCCTCTC
GTTTCGAGGGAGACTGGAAGGGAGGAATGACGCGTCTTTGTACGCTGTTT
TTGACGGGCACGGTGGTGCCTTGGCGAGTGAGTTTTGTGCGCAGGAGCTG
CCACGATATGTGGTGGGGAGTGAGGAGGGGTGGGAGGTGGCGACGAAAGC
GGCCTTAAGAGACGCCTTCATGAAGACAGATGCAGCGTTTGTCAAGGCGA
CTGAGGGGACGAATCGATTGGATGGGACGACGGCCTTGGTGGCTTTGATA
AGGGGAACTCAATTGTTCGTGGCCAACGCCGGGGACAGCAGGGCTATTTT
GGTGCAGAGAGGAGCGAGGGTCGTGCCTCTGAGTCGTGACCACAAGCCGA
GTCTACCGGACGAATTGCAGAGGATAACGGAAATGGGTGGCAAAGTCATA
TTTTGGGGTCGGTGGAGGGTGGAGGGGATTCTGGCGGTGTCCCGAGCTAT
TGGGGACATGCATTTGAAGCCTTACGTGACTCCTGAGCCGGAGGTGACGG
AGTGGGAGGTTGCGGAGGATGACTTATTTTTGATTCTCGCAAGTGATGGT
ATATGGGATGTGCTTTCGAATGAGATGGTGGCTGCATTTGTGGTCAACCA
CAGTCACGACGTCAAGCTGGCAGCCAAGAGACTCTGTCGCGAGGCCTCTC
TGAATGGCTCCATGGACAATTTATGTGCTGTCGTTATTGACCTGCGAGAG
ATCCGACGGAGGAGGGGGAACAGCATCGACAGATTAAGTTAG back to top
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