Properties
| Property Name | Value |
|---|
| TranscriptId | 579684 |
| Track | FilteredModels2 |
| ProteinId | 579598 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1157014..1162443 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2245 ID=mRNA_2245|Name=jgi.p|Nanoce1779_2|579598|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
ACAGCGCGCGATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCA
CGGTCAAGAGCACCATCAACGACGACAGCACCGACGTTGCCACTACCACT
ATCAAGCCCCGCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGC
CGCTGTGAGGAAGACTCCCAGCACAACCATCACGAGCCCCACCAGCATTG
CCAGCAGCAAAAAGAGCAACAAACCAAGCAATATCACGAGCAGCCTTGCG
ACAAGCAAGTGGTCCATCTTCTTCTACATTCCCAATCTGATCGGGTACCT
GCGTGTGATTGCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGG
CAAAGTGGGAAAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGAT
GCCGTCGACGGGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGG
AGGAGTTCTGGACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGA
TGATTAATTTGTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATC
AGTCTGTGCATGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGC
GGCAGGTCGGCACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCA
TTTTGCAGTGGTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACC
GGGCAGGAGTTCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGCGTGAC
ATTCGGGCGTGTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGC
ACTTTCCGATCGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTG
GCCGGCATTAAGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGT
GAGCCTTGCGGAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGC
AAGGAGAGTAGTAAGGAGGGAGGGAGGGAGTAAGGAGAGACGAGGATGGA
CCTATGGGGCACGGGAGCACTTGAGAGATGATTTGGAAGGTGATGACGGA
GAAAGGAAACTAGGGGAAGAAGGTTACAAAGTAGGAGAGGGGCTACGTCT
TCTACAGGGTAAAGATGGAGGTGGTGGTGGTGAGAGAGGGGCAGAAACGA
GGAGGGACAGCACATTTTTTTCCGGCATCAGACAAGAAGCGCAGGTGACT
AGCGACCATTCGTGGGGCTGCTAGCCGCCGCTTCTCGCGGTTTCCTCAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAGCAACAACAACAGCAGCAGCAACA
ACAACAACGACCACCACCACCACCACAACAACAACAACAACAACAAGAAG
AACGATAATGACGACGACGACGATTACAACAACGACAACGATGACAACAA
CGACAACTTTACATACACACACATA back to topprotein sequence of jgi.p|Nanoce1779_2|579598 >mRNA_2245-protein ID=mRNA_2245-protein|Name=jgi.p|Nanoce1779_2|579598|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MPRTSPYRTRGGRTVKSTINDDSTDVATTTIKPRASSRRATISGSSAAVR
KTPSTTITSPTSIASSKKSNKPSNITSSLATSKWSIFFYIPNLIGYLRVI
ATLYSLYLGVQRKAKWENVVGLYFLAFALDAVDGHVARMVGQESGFGGVL
DMVTDRTATAGLVMINLLVEIEDWKKFGWISLCMLDISSHWFHCIAAAGR
HHKSAEATAGKNFILQWYYACKPLFFACCTGQEFFYLLNFIKEKGVTFGR
VAAPEWLHPEMKVHFPIDILESLWWITMVLAGIKQVVNVAQLASAAVSLA
EEDAEKDMKKKGKQGE* back to topmRNA from alignment at scaffold_4:1157014..1162443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2245 ID=mRNA_2245|Name=jgi.p|Nanoce1779_2|579598|organism=Nannochloropsis oceanica|type=mRNA|length=5430bp|location=Sequence derived from alignment at scaffold_4:1157014..1162443- (Nannochloropsis oceanica)
ACAGCGCGCGATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCA
CGGTCAAGAGCACCATCAACGACGACAGCACCGACGTTGCCACTACCACT
ATCAAGCCCCGCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGC
CGCTGTGAGGAAGACTCCCAGCACAACCATCACGAGCCCCACCAGCATTG
CCAGCAGCAAAAAGAGCAACAAACCAAGCAATATCACGAGCAGCCTTGCG
ACAAGCAAGTGGTCCATCTTCTTCTACATTCCCAATCTGATCGGGTACCT
GCGTGTGATTGCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGG
CAAAGTGGGAAAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGAT
GCCGTCGACGGGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGG
AGGAGTTCTGGACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGA
TGATTAATTTGTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATC
AGTCTGTGCATGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGC
GGCAGGTCGGCACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCA
TTTTGCAGTGGTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACC
GGGCAGGAGTTCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGCGTGAC
ATTCGGGCGTGTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGC
ACTTTCCGATCGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTG
GCCGGCATTAAGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGT
GAGCCTTGCGGAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGC
AAGGAGAGTAGTAAGGAGGGAGGGAGGGAGTAAGGAGAGACGAGGATGGA
CCTATGGGGCACGGGAGCACTTGAGAGATGATTTGGAAGGTGATGACGGA
GAAAGGAAACTAGGGGAAGAAGGTTACAAAGTAGGAGAGGGGCTACGTCT
TCTACAGGGTAAAGATGGAGGTGGTGGTGGTGAGAGAGGGGCAGAAACGA
GGAGGGACAGCACATTTTTTTCCGGCATCAGACAAGAAGCGCAGGTGACT
AGCGACCATTCGTGGGGCTGCTAGCCGCCGCTTCTCGCGGTTTCCTCAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAGCAACAACAACAGCAGCAGCAACA
ACAACAACGACCACCACCACCACCACAACAACAACAACAACAACAAGAAG
AACGATAATGACGACGACGACGATTACAACAACGACAACGATGACAACAA
CGACAACTGTGAGGCCGTTTTCCCCCCGACGCATCAATGACGACAAAGCA
CGCCAGATTAAATGTTTGAAACCAAGATGGGATACGCGTCGATTGCCTTT
TTTACATACACATACATATCATTTATATCTATGAATTTTGGACGGACATG
GCACAACAAGAAGGGGTAAAAGGGATACAACAAAAGCGAGAATAAACGGA
ATTTTAAATATTTCTACAGCAAAATATGTGCATGAGTTCAACGGTCTAAA
AACTTATAGCCGCTCTCTCTTGATTGAATTACTTAAAATTTGAAATCCAT
CGCTCATTCTTTATAGTCAAAAATATCTTCTCCTCCAAACTTCTCTGCCC
GATCATGTGGTGCCAGAAGCCGCAAATCCGCTTCTGTGGGGCCAACGGGG
CAGATACCCGATGGGTTTAACGGGAAAAGCTGCAGAAAAAGAGGGAGGAA
GGGAAGGGGGGAAGGGAGAGAACGAAGGTGTGATTGTGTGAACCATTCTA
TTCTATTGTTACTTATTTGTGATGGCCTCTTACTTCCCAAATACCCTTCC
CTCCCTCCATCCGTCCATCCCTCTCTTCCCATCCTCTCCTTCCCTCCCTC
CCTCCCTCCCTCCCTACCTGCACATAATAGCTTCGGATCAACCCGGGCAA
GTCCACCGTCTGTCTCACCCCCGGCAGCTGGTACACCTCCCTCAACCACA
TGGACAGATTCGGGTAATCCCCTATCCTTTTCCTTGTGCATTTGAACAAG
GTGGAGTAGACGGCATCAAACCGGATGATGGTGGGAAAGAGACGCACCTA
GGGAGGGAGGGAGGGAAGGAAGGATGAATGGGAGTGGATAATCAGTATAA
TATCCTGACCCACATGTAACATCATCCTCCCTCCTTCCCTCCCTCCTTCC
CTCCCTCCCTCCCTCCTTCCCTCCCTCTTACATCCGCCTCCGTCAGGACA
CTTCCCGCCAGAAACCGCTGCTTCCTCAAGATCTGCTCGACGCGCTCCAA
GCCCTCAAACACGTCCTCTACCCCATCCTCGTATCCTCCTTGGGTGGTGG
CAAACCCACACCGATAGACGCCATTGTTAATACTGGGCTGGACCCACGCA
TTAATTGCATCAATCGTGGCACGGAGGGAAGGAGGGTAGAGGTCGATATC
GTGAGTGAGGGGGGGGAGAGGGAGGAAGAGGTTGAGGGCGCGAAGAATGT
CGCTGCTTTCGTTGTTGACGATACGTTTGGTTCTCTTGTCTATCAAGACA
GGCGCGGTGCAACGGCCCGTGTACCCGGGAGCGCATAAATCGTACACTTC
CCTCAAGTCATTGCATCCAAACACCCGATCCACATGCTCCTGCACTTGGC
CTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTGCTTCCCTCTCT
CCTTCACGTTCGAAAGCCCACCCTCCCCGTGAGGCCTTTTCCGGGTCGTC
GATGGCATATGAATAAGAAATTTGTTTTTGGTTTAATGCCCTGAGGGTGT
GTGCGAGGGTGAGACGATGGCACCAGGGGCAGGCATTTCCGACATAGACG
TGATAGCGACCTTCTTCGAGCGGGAAGGGGGGGGAGCCGAGTTGACCGTT
GAAGGTATAGGAGGGACGAACGTAGCTCCCGTCTTTGCTCTGTGGTGCAA
GCTCAGTCATGAGGGTCTAGAGGAGAGAGAGAGGGAGGGAGGGGGGAGGT
GAGAGGTAAGGGGCCAGAGCTTGTGTAGAGGAAGATAGTGAGAAAAGAGA
CAGAAAGGGAGGGAGGGAGGGAAAGAGGGAGGGATGATGGGCGCACCTTC
CACATCGTATTCCATCCGAATCGCGCGGTTTTGACAAGGGTTTTTTGAGG
AAGAAGGGCATTGGTCCACTCAAGAAGGCGGAGACCTTTGTAGGAAGAGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGGAGGA
GGAGAGGCGGAGGAGAGGTGGAGGGGGGGGAGCCGCGGTCGGAGGGAGGA
AGTGGCAGTGAAGGCGGTGGTAGACTGGAAGAGGAGGGGGAGAACGAAAA
GAAGGAGGGGAGGGAGGAGGAGGGGGAGGCGGATGATCATGGCTCGCTCT
GTCTGGGGGGGAAGTGGAGGGAGGGAGGAAAGAATTAGCAAAGGTAAGCC
TATGAAAGAAATAAGGAAATATGGAACGAGGATGAGGAAATGAGCATGTA
ACAATGCTGTGTGAGTGTTGTCTGACCTCTTTTTAAAAGGAGGGGAGGCG
GGTAGCCGGGAAAGCGCGCACAGCATACATGCATGTATGCTTACACACGC
ATACACACTCGCACTAACACATGTGCACGATACGCGTGGGGCTGCTCCTC
AATTGCTGTAATTCTCCATGTATAAGGGAATTTAGATTCTAGTCACTGCT
TCCCGCCGCTGCTTCTTCTTTTGGCTCCAAATATCAGCTATCATCATTCG
GCGGCACTACACGCTCCTCCTACTCCTCCTCCTCCTCCTAATCCTCCTCT
TATGTATATATGTACATGTCTCGCTGAGGGTTATGCTGCTGCTACCCTTT
CCCTTGTACCACAATTATTTGTGTAATATATATATATATATATATATATA
TATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGATCAACGACGA
CGACGCTCAAGCAATGGCACGTGCATGTAAGCCGACAAAACGGGTGCATC
CTCCTCCCTCACCGCAACGGAAAGAAAACCGTTTCCTCTCTCTTTACAGC
CCGCCCCTCGTCTTCCCTTCTCCACCTTCTTTGCATGAGCAACGATGACA
AGTGGACAATGTCTTCTCTCCTCCTTCCTACCTCCTTCCTTCCCTCCCTC
CCTCCCTCCTTCACATTTTCAAAAGTCAGTTATCGCCTCTTCCCTCCCTG
TCTCCATCCCCGCCCCCCTCCCTCATTCTCCCCCCCTCCTCCTCCTCCTC
CGGTGCGATCGAGACAAACGTCACCTCGTTGGCCAAGCCGCATGTGTTGT
TCCTCGATGACAGGCGGATATGGCCATCCATACCCCACAAGGTTGACCAC
GAATTACGAACCTGGGAGGGGGCGAAGGAGGGAGGGAGGGAGGGGGCGAA
GGAGGGGAGGAGGGAGGGAGGGGGAGAGAAGGGGAAGGAGGGAGAAGGGA
TTGAGGGAGGGGTGTGGTCGAGCGCCATTCAGACATCAGTGATCAAGGAG
ATAGAATGCTCAAGGAGATAGACAGTGGGGGAGGGGGGGAGGGCTGAGGA
CTAACCACGAAATAGGGCTCGGGTGCGTTGTCATTGTATCCCACAATATT
GACGCAGTGATCGAGAGAATCGTAGGCGTAGCTCCCGCAAGCCTCCGTCA
TTAGTACACCCTGAGAGGGGGAGAGCGGGAAAGAGGAAGGGAGGGAGGGA
GGGAGAGGTAAGTTGTAGCCGTGGCCTCCGCAGACCTCGGTCATCAGCAC
ACCCTGCAGAAGAATAATGGGGAGGAGGGAGGGAAGGGAGAAAGAGAGGG
GAGGAGGAAGGGATGAAGGAAGAAAGAGAGGGGGGGGGGGAGGGAGGGAG
GGAGGGCGGGAGGGCGGGAGACGACGTACCTCGACGTACAACCCCCAGCT
CTCGGCGTTGACACATATGGAGGCGGGCCCATATTCCGCCACATTCGCCT
TCAAGAGGTCAAGGTCTTGCGCGTCGCAGGCGTCGTCGCAGGGCGGAGTG
CCGTAGGACCAGCCGGCGATAGAGACATAGAACCCTAGGGAAGGAGGGGG
GAGGGCGGGAGGGAGGGACTCTTGAGTGTTGTGGAAGGGAATTGGAGAAC
GACGGGTGGGAGGGACAGAGGGAAGGTATGTGTGCGGAGTCGAGAAATGT
AGGTGGAGGGAGGGAGGGAGGGGGGGGGGATAAATAAGGAGGGAAAGTCT
TCACGTGGGACAACGGCATGCCCGTCTTTCCTTCCTTTTTCTCTAACCCA
TTCCCACACACCTTTACATACACACACATA back to topCoding sequence (CDS) from alignment at scaffold_4:1157014..1162443- >mRNA_2245 ID=mRNA_2245|Name=jgi.p|Nanoce1779_2|579598|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_4:1157014..1162443- (Nannochloropsis oceanica)
ATGCCTAGAACTAGCCCCTACCGCACCCGCGGTGGGCGCACGGTCAAGAG
CACCATCAACGACGACAGCACCGACGTTGCCACTACCACTATCAAGCCCC
GCGCAAGTAGCCGGCGTGCGACCATTTCTGGCTCCTCCGCCGCTGTGAGG
AAGACTCCCAGCACAACCATCACGAGCCCCACCAGCATTGCCAGCAGCAA
AAAGAGCAACAAACCAAGCAATATCACGAGCAGCCTTGCGACAAGCAAGT
GGTCCATCTTCTTCTACATTCCCAATCTGATCGGGTACCTGCGTGTGATT
GCCACGCTTTACTCCCTTTACTTGGGTGTGCAACGTAAGGCAAAGTGGGA
AAACGTGGTTGGGTTGTATTTCTTGGCTTTTGCCTTGGATGCCGTCGACG
GGCACGTGGCACGAATGGTGGGACAGGAGAGTGGATTTGGAGGAGTTCTG
GACATGGTAACGGATAGGACAGCGACTGCGGGGTTGGTGATGATTAATTT
GTTGGTAGAGATCGAGGACTGGAAAAAATTCGGGTGGATCAGTCTGTGCA
TGCTTGACATTTCGAGCCATTGGTTTCATTGCATCGCAGCGGCAGGTCGG
CACCACAAGTCAGCGGAGGCTACGGCGGGGAAGAATTTCATTTTGCAGTG
GTATTATGCGTGTAAACCCTTGTTTTTTGCCTGTTGCACCGGGCAGGAGT
TCTTTTACCTCTTGAATTTTATTAAGGAGAAGGGCGTGACATTCGGGCGT
GTGGCCGCACCGGAATGGTTGCACCCGGAGATGAAGGTGCACTTTCCGAT
CGATATTTTGGAGAGTTTGTGGTGGATCACGATGGTCTTGGCCGGCATTA
AGCAGGTGGTGAACGTGGCGCAGCTCGCCTCGGCGGCTGTGAGCCTTGCG
GAGGAGGACGCCGAAAAGGACATGAAAAAGAAGGGGAAGCAAGGAGAGTA
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