jgi.p|Nanoce1779_2|579599, mRNA_2244 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579599
Unique Name	mRNA_2244
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1239
Alignment location	scaffold_4:1159040..1160730 +

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Properties


Property Name	Value
TranscriptId	579685
Track	FilteredModels2
ProteinId	579599

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1159040..1160730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579599	gene_2244	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579599	mRNA_2244-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2244	CDS_2244	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1159040..1160730+
coding sequence from alignment at scaffold_4:1159040..1160730+

mRNA sequence

>mRNA_2244 ID=mRNA_2244|Name=jgi.p|Nanoce1779_2|579599|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
CTCCTCCTCCTTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCCTCTTCCTACAAAGGTCTCCGCCTTCTTGAGTGGACCAATGCCCT
TCTTCCTCAAAAAACCCTTGTCAAAACCGCGCGATTCGGATGGAATACGA
TGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAGACGGGAGC
TACGTTCGTCCCTCCTATACCTTCAACGGTCAACTCGGCTCCCCCCCCTT
CCCGCTCGAAGAAGGTCGCTATCACGTCTATGTCGGAAATGCCTGCCCCT
GGTGCCATCGTCTCACCCTCGCACACACCCTCAGGGCATTAAACCAAAAA
CAAATTTCTTATTCATATGCCATCGACGACCCGGAAAAGGCCTCACGGGG
AGGGTGGGCTTTCGAACGTGAAGGAGAGAGGGAAGCAGGGAGGGAAGGAG
GGAGGGAAGGAGGGAGGGAAGGAGGCCAAGTGCAGGAGCATGTGGATCGG
GTGTTTGGATGCAATGACTTGAGGGAAGTGTACGATTTATGCGCTCCCGG
GTACACGGGCCGTTGCACCGCGCCTGTCTTGATAGACAAGAGAACCAAAC
GTATCGTCAACAACGAAAGCAGCGACATTCTTCGCGCCCTCAACCTCTTC
CTCCCTCTCCCCCCCCTCACTCACGATATCGACCTCTACCCTCCTTCCCT
CCGTGCCACGATTGATGCAATTAATGCGTGGGTCCAGCCCAGTATTAACA
ATGGCGTCTATCGGTGTGGGTTTGCCACCACCCAAGGAGGATACGAGGAT
GGGGTAGAGGACGTGTTTGAGGGCTTGGAGCGCGTCGAGCAGATCTTGAG
GAAGCAGCGGTTTCTGGCGGGAAGTGTCCTGACGGAGGCGGATGTGCGTC
TCTTTCCCACCATCATCCGGTTTGATGCCGTCTACTCCACCTTGTTCAAA
TGCACAAGGAAAAGGATAGGGGATTACCCGAATCTGTCCATGTGGTTGAG
GGAGGTGTACCAGCTGCCGGGGGTGAGACAGACGGTGGACTTGCCCGGGT
TGATCCGAAGCTATTATGTGCAGCTTTTCCCGTTAAACCCATCGGGTATC
TGCCCCGTTGGCCCCACAGAAGCGGATTTGCGGCTTCTGGCACCACATGA
TCGGGCAGAGAAGTTTGGAGGAGAAGATATTTTTGACTATAAAGAATGAG
CGATGGATTTCAAATTTTAAGTAATTCAATCAAGAGAGA

protein sequence of jgi.p|Nanoce1779_2|579599

>mRNA_2244-protein ID=mRNA_2244-protein|Name=jgi.p|Nanoce1779_2|579599|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MWKTLMTELAPQSKDGSYVRPSYTFNGQLGSPPFPLEEGRYHVYVGNACP
WCHRLTLAHTLRALNQKQISYSYAIDDPEKASRGGWAFEREGEREAGREG
GREGGREGGQVQEHVDRVFGCNDLREVYDLCAPGYTGRCTAPVLIDKRTK
RIVNNESSDILRALNLFLPLPPLTHDIDLYPPSLRATIDAINAWVQPSIN
NGVYRCGFATTQGGYEDGVEDVFEGLERVEQILRKQRFLAGSVLTEADVR
LFPTIIRFDAVYSTLFKCTRKRIGDYPNLSMWLREVYQLPGVRQTVDLPG
LIRSYYVQLFPLNPSGICPVGPTEADLRLLAPHDRAEKFGGEDIFDYKE*

mRNA from alignment at scaffold_4:1159040..1160730+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2244 ID=mRNA_2244|Name=jgi.p|Nanoce1779_2|579599|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at scaffold_4:1159040..1160730+ (Nannochloropsis oceanica)
CTCCTCCTCCTTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCCTCTTCCTACAAAGGTCTCCGCCTTCTTGAGTGGACCAATGCCCT
TCTTCCTCAAAAAACCCTTGTCAAAACCGCGCGATTCGGATGGAATACGA
TGTGGAAGGTGCGCCCATCATCCCTCCCTCTTTCCCTCCCTCCCTCCCTT
TCTGTCTCTTTTCTCACTATCTTCCTCTACACAAGCTCTGGCCCCTTACC
TCTCACCTCCCCCCTCCCTCCCTCTCTCTCTCCTCTAGACCCTCATGACT
GAGCTTGCACCACAGAGCAAAGACGGGAGCTACGTTCGTCCCTCCTATAC
CTTCAACGGTCAACTCGGCTCCCCCCCCTTCCCGCTCGAAGAAGGTCGCT
ATCACGTCTATGTCGGAAATGCCTGCCCCTGGTGCCATCGTCTCACCCTC
GCACACACCCTCAGGGCATTAAACCAAAAACAAATTTCTTATTCATATGC
CATCGACGACCCGGAAAAGGCCTCACGGGGAGGGTGGGCTTTCGAACGTG
AAGGAGAGAGGGAAGCAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAA
GGAGGCCAAGTGCAGGAGCATGTGGATCGGGTGTTTGGATGCAATGACTT
GAGGGAAGTGTACGATTTATGCGCTCCCGGGTACACGGGCCGTTGCACCG
CGCCTGTCTTGATAGACAAGAGAACCAAACGTATCGTCAACAACGAAAGC
AGCGACATTCTTCGCGCCCTCAACCTCTTCCTCCCTCTCCCCCCCCTCAC
TCACGATATCGACCTCTACCCTCCTTCCCTCCGTGCCACGATTGATGCAA
TTAATGCGTGGGTCCAGCCCAGTATTAACAATGGCGTCTATCGGTGTGGG
TTTGCCACCACCCAAGGAGGATACGAGGATGGGGTAGAGGACGTGTTTGA
GGGCTTGGAGCGCGTCGAGCAGATCTTGAGGAAGCAGCGGTTTCTGGCGG
GAAGTGTCCTGACGGAGGCGGATGTAAGAGGGAGGGAAGGAGGGAGGGAG
GGAGGGAAGGAGGGAGGGAAGGAGGGAGGATGATGTTACATGTGGGTCAG
GATATTATACTGATTATCCACTCCCATTCATCCTTCCTTCCCTCCCTCCC
TCCCTAGGTGCGTCTCTTTCCCACCATCATCCGGTTTGATGCCGTCTACT
CCACCTTGTTCAAATGCACAAGGAAAAGGATAGGGGATTACCCGAATCTG
TCCATGTGGTTGAGGGAGGTGTACCAGCTGCCGGGGGTGAGACAGACGGT
GGACTTGCCCGGGTTGATCCGAAGCTATTATGTGCAGGTAGGGAGGGAGG
GAGGGAGGGAGGGAAGGAGAGGATGGGAAGAGAGGGATGGACGGATGGAG
GGAGGGAAGGGTATTTGGGAAGTAAGAGGCCATCACAAATAAGTAACAAT
AGAATAGAATGGTTCACACAATCACACCTTCGTTCTCTCCCTTCCCCCCT
TCCCTTCCTCCCTCTTTTTCTGCAGCTTTTCCCGTTAAACCCATCGGGTA
TCTGCCCCGTTGGCCCCACAGAAGCGGATTTGCGGCTTCTGGCACCACAT
GATCGGGCAGAGAAGTTTGGAGGAGAAGATATTTTTGACTATAAAGAATG
AGCGATGGATTTCAAATTTTAAGTAATTCAATCAAGAGAGA

Coding sequence (CDS) from alignment at scaffold_4:1159040..1160730+

>mRNA_2244 ID=mRNA_2244|Name=jgi.p|Nanoce1779_2|579599|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_4:1159040..1160730+ (Nannochloropsis oceanica)
ATGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAGACGGGAG
CTACGTTCGTCCCTCCTATACCTTCAACGGTCAACTCGGCTCCCCCCCCT
TCCCGCTCGAAGAAGGTCGCTATCACGTCTATGTCGGAAATGCCTGCCCC
TGGTGCCATCGTCTCACCCTCGCACACACCCTCAGGGCATTAAACCAAAA
ACAAATTTCTTATTCATATGCCATCGACGACCCGGAAAAGGCCTCACGGG
GAGGGTGGGCTTTCGAACGTGAAGGAGAGAGGGAAGCAGGGAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGCCAAGTGCAGGAGCATGTGGATCG
GGTGTTTGGATGCAATGACTTGAGGGAAGTGTACGATTTATGCGCTCCCG
GGTACACGGGCCGTTGCACCGCGCCTGTCTTGATAGACAAGAGAACCAAA
CGTATCGTCAACAACGAAAGCAGCGACATTCTTCGCGCCCTCAACCTCTT
CCTCCCTCTCCCCCCCCTCACTCACGATATCGACCTCTACCCTCCTTCCC
TCCGTGCCACGATTGATGCAATTAATGCGTGGGTCCAGCCCAGTATTAAC
AATGGCGTCTATCGGTGTGGGTTTGCCACCACCCAAGGAGGATACGAGGA
TGGGGTAGAGGACGTGTTTGAGGGCTTGGAGCGCGTCGAGCAGATCTTGA
GGAAGCAGCGGTTTCTGGCGGGAAGTGTCCTGACGGAGGCGGATGTGCGT
CTCTTTCCCACCATCATCCGGTTTGATGCCGTCTACTCCACCTTGTTCAA
ATGCACAAGGAAAAGGATAGGGGATTACCCGAATCTGTCCATGTGGTTGA
GGGAGGTGTACCAGCTGCCGGGGGTGAGACAGACGGTGGACTTGCCCGGG
TTGATCCGAAGCTATTATGTGCAGCTTTTCCCGTTAAACCCATCGGGTAT
CTGCCCCGTTGGCCCCACAGAAGCGGATTTGCGGCTTCTGGCACCACATG
ATCGGGCAGAGAAGTTTGGAGGAGAAGATATTTTTGACTATAAAGAATGA
ATGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAGACGGGAG
CTACGTTCGTCCCTCCTATACCTTCAACGGTCAACTCGGCTCCCCCCCCT
TCCCGCTCGAAGAAGGTCGCTATCACGTCTATGTCGGAAATGCCTGCCCC
TGGTGCCATCGTCTCACCCTCGCACACACCCTCAGGGCATTAAACCAAAA
ACAAATTTCTTATTCATATGCCATCGACGACCCGGAAAAGGCCTCACGGG
GAGGGTGGGCTTTCGAACGTGAAGGAGAGAGGGAAGCAGGGAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGCCAAGTGCAGGAGCATGTGGATCG
GGTGTTTGGATGCAATGACTTGAGGGAAGTGTACGATTTATGCGCTCCCG
GGTACACGGGCCGTTGCACCGCGCCTGTCTTGATAGACAAGAGAACCAAA
CGTATCGTCAACAACGAAAGCAGCGACATTCTTCGCGCCCTCAACCTCTT
CCTCCCTCTCCCCCCCCTCACTCACGATATCGACCTCTACCCTCCTTCCC
TCCGTGCCACGATTGATGCAATTAATGCGTGGGTCCAGCCCAGTATTAAC
AATGGCGTCTATCGGTGTGGGTTTGCCACCACCCAAGGAGGATACGAGGA
TGGGGTAGAGGACGTGTTTGAGGGCTTGGAGCGCGTCGAGCAGATCTTGA
GGAAGCAGCGGTTTCTGGCGGGAAGTGTCCTGACGGAGGCGGATGTGCGT
CTCTTTCCCACCATCATCCGGTTTGATGCCGTCTACTCCACCTTGTTCAA
ATGCACAAGGAAAAGGATAGGGGATTACCCGAATCTGTCCATGTGGTTGA
GGGAGGTGTACCAGCTGCCGGGGGTGAGACAGACGGTGGACTTGCCCGGG
TTGATCCGAAGCTATTATGTGCAGCTTTTCCCGTTAAACCCATCGGGTAT
CTGCCCCGTTGGCCCCACAGAAGCGGATTTGCGGCTTCTGGCACCACATG
ATCGGGCAGAGAAGTTTGGAGGAGAAGATATTTTTGACTATAAAGAATGA
ATGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAGACGGGAG
CTACGTTCGTCCCTCCTATACCTTCAACGGTCAACTCGGCTCCCCCCCCT
TCCCGCTCGAAGAAGGTCGCTATCACGTCTATGTCGGAAATGCCTGCCCC
TGGTGCCATCGTCTCACCCTCGCACACACCCTCAGGGCATTAAACCAAAA
ACAAATTTCTTATTCATATGCCATCGACGACCCGGAAAAGGCCTCACGGG
GAGGGTGGGCTTTCGAACGTGAAGGAGAGAGGGAAGCAGGGAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGCCAAGTGCAGGAGCATGTGGATCG
GGTGTTTGGATGCAATGACTTGAGGGAAGTGTACGATTTATGCGCTCCCG
GGTACACGGGCCGTTGCACCGCGCCTGTCTTGATAGACAAGAGAACCAAA
CGTATCGTCAACAACGAAAGCAGCGACATTCTTCGCGCCCTCAACCTCTT
CCTCCCTCTCCCCCCCCTCACTCACGATATCGACCTCTACCCTCCTTCCC
TCCGTGCCACGATTGATGCAATTAATGCGTGGGTCCAGCCCAGTATTAAC
AATGGCGTCTATCGGTGTGGGTTTGCCACCACCCAAGGAGGATACGAGGA
TGGGGTAGAGGACGTGTTTGAGGGCTTGGAGCGCGTCGAGCAGATCTTGA
GGAAGCAGCGGTTTCTGGCGGGAAGTGTCCTGACGGAGGCGGATGTGCGT
CTCTTTCCCACCATCATCCGGTTTGATGCCGTCTACTCCACCTTGTTCAA
ATGCACAAGGAAAAGGATAGGGGATTACCCGAATCTGTCCATGTGGTTGA
GGGAGGTGTACCAGCTGCCGGGGGTGAGACAGACGGTGGACTTGCCCGGG
TTGATCCGAAGCTATTATGTGCAGCTTTTCCCGTTAAACCCATCGGGTAT
CTGCCCCGTTGGCCCCACAGAAGCGGATTTGCGGCTTCTGGCACCACATG
ATCGGGCAGAGAAGTTTGGAGGAGAAGATATTTTTGACTATAAAGAATGA
ATGTGGAAGACCCTCATGACTGAGCTTGCACCACAGAGCAAAGACGGGAG
CTACGTTCGTCCCTCCTATACCTTCAACGGTCAACTCGGCTCCCCCCCCT
TCCCGCTCGAAGAAGGTCGCTATCACGTCTATGTCGGAAATGCCTGCCCC
TGGTGCCATCGTCTCACCCTCGCACACACCCTCAGGGCATTAAACCAAAA
ACAAATTTCTTATTCATATGCCATCGACGACCCGGAAAAGGCCTCACGGG
GAGGGTGGGCTTTCGAACGTGAAGGAGAGAGGGAAGCAGGGAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGCCAAGTGCAGGAGCATGTGGATCG
GGTGTTTGGATGCAATGACTTGAGGGAAGTGTACGATTTATGCGCTCCCG
GGTACACGGGCCGTTGCACCGCGCCTGTCTTGATAGACAAGAGAACCAAA
CGTATCGTCAACAACGAAAGCAGCGACATTCTTCGCGCCCTCAACCTCTT
CCTCCCTCTCCCCCCCCTCACTCACGATATCGACCTCTACCCTCCTTCCC
TCCGTGCCACGATTGATGCAATTAATGCGTGGGTCCAGCCCAGTATTAAC
AATGGCGTCTATCGGTGTGGGTTTGCCACCACCCAAGGAGGATACGAGGA
TGGGGTAGAGGACGTGTTTGAGGGCTTGGAGCGCGTCGAGCAGATCTTGA
GGAAGCAGCGGTTTCTGGCGGGAAGTGTCCTGACGGAGGCGGATGTGCGT
CTCTTTCCCACCATCATCCGGTTTGATGCCGTCTACTCCACCTTGTTCAA
ATGCACAAGGAAAAGGATAGGGGATTACCCGAATCTGTCCATGTGGTTGA
GGGAGGTGTACCAGCTGCCGGGGGTGAGACAGACGGTGGACTTGCCCGGG
TTGATCCGAAGCTATTATGTGCAGCTTTTCCCGTTAAACCCATCGGGTAT
CTGCCCCGTTGGCCCCACAGAAGCGGATTTGCGGCTTCTGGCACCACATG
ATCGGGCAGAGAAGTTTGGAGGAGAAGATATTTTTGACTATAAAGAATGA

Synonyms

Publications