jgi.p|Nanoce1779_2|579596, mRNA_2243 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579596
Unique Name	mRNA_2243
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1006
Alignment location	scaffold_4:1155982..1158170 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579682
Track	FilteredModels2
ProteinId	579596

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1155982..1158170 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579596	gene_2243	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579596	mRNA_2243-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2243	CDS_2243	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1155982..1158170+
coding sequence from alignment at scaffold_4:1155982..1158170+

mRNA sequence

>mRNA_2243 ID=mRNA_2243|Name=jgi.p|Nanoce1779_2|579596|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
GGAGTGAGGAAGGGGATGGCGATTCGCAGGCCCTTGGCGTGGACTTCGGC
GAGGATGGAGAGGGAGGGCGAGGAGGAGGGAGGGAAGGAGGGAGGGGGGC
CCGTGCAGAAGCGGCCGGCAATGGTGGACTGGGTTGAGGCAGGTGCGACG
ACGAGCGTGGCGAATCAAGGACAGTGCGGGTCCTGCTGGGCGTTCTCGGC
CACGTCACAGATTGAATCTGCCTTCATCATGGACGGGAACGCCCCGTGGC
GTTTGTCGGTGCAGCAGGTCACCTCCTGCACGGCCAATGGCTTTGGGTGT
GGGGGGGGGGATACGATCGAAGCCTACGAGCAGCTGCTAGGAGGGGAGAC
AAAGACGGGCATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTT
ATGTCGAGAGCATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAA
TGCCGCAACCGGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGC
CTTGACCGGGTTCTATGTCTCTATCGCCGGCTGGTCCTACGGCACTCCGC
CCTGCGACGACGCCTGCGACGCGCAAGACCTTGACCTCTTGAAGGCGAAT
GTGGCGGAATATGGGCCCGCCTCCATATGTGTCAACGCCGAGAGCTGGGG
GTTGTACGTCGAGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGCCT
ACGATTCTCTCGATCACTGCGTCAATATTGTGGGATACAATGACAACGCA
CCCGAGCCCTATTTCGTGGTTCGTAATTCGTGGTCAACCTTGTGGGGTAT
GGATGGCCATATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCA
ACGAGGTGACGTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGG
AGAATGAGGGAGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAA
CTGACTTTTGAAAATGTGAAGGAGGGAGGGAGGGAGGGAAGGAAGGAGGT
AGGAAG

protein sequence of jgi.p|Nanoce1779_2|579596

>mRNA_2243-protein ID=mRNA_2243-protein|Name=jgi.p|Nanoce1779_2|579596|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MAIRRPLAWTSARMEREGEEEGGKEGGGPVQKRPAMVDWVEAGATTSVAN
QGQCGSCWAFSATSQIESAFIMDGNAPWRLSVQQVTSCTANGFGCGGGDT
IEAYEQLLGGETKTGMQTPGLVSAAMAPYVESMYEECLSPRCTEKCRNRQ
IGNLTKAEEYEALTGFYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYG
PASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYF
VVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPEEEEEGGRMREG
GGDGDREGRGDN*

mRNA from alignment at scaffold_4:1155982..1158170+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2243 ID=mRNA_2243|Name=jgi.p|Nanoce1779_2|579596|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at scaffold_4:1155982..1158170+ (Nannochloropsis oceanica)
GGAGTGAGGAAGGGGATGGCGATTCGCAGGCCCTTGGCGTGGACTTCGGC
GAGGATGGAGAGGGAGGGCGAGGAGGAGGGAGGGAAGGAGGGAGGGGGGC
CCGTGCAGAAGCGGCCGGCAATGGTGGACTGGGTTGAGGCAGGTGCGACG
ACGAGCGTGGCGAATCAAGGACAGTGCGGGGTAAGTGCATGCCTCTCTGC
TTTCCCTCCTTCTTCCCTCATCCTCTTTAGGTTAAAATTATTAGCTTGTG
ACGTGGGTGTAGGGGCTGGGCGTTTTTTGTTTTTTATTTTTAAAACTTTT
GTTAATTGCGTTATGATTGCCCGCCGTGCTTCTTTCATTCTTATCGACTT
GCCCTCCCTCTCTCCATCCCTCCTTCCCACTCTCCTAGTCCTGCTGGGCG
TTCTCGGCCACGTCACAGATTGAATCTGCCTTCATCATGGACGGGAACGC
CCCGTGGCGTTTGTCGGTGCAGCAGGTCACCTCCTGCACGGCCAATGGCT
TTGGGTGTGGGGGGGGGGATACGATCGAAGCCTACGAGCAGGTGCGTAGG
TCAGGAAGATGGAGGGAGGGAGAGAGGGGGAGGAAGGGGGAGGTCCATGC
ATATATGAGCGTGTTGGGGGGGGGAAAGCGAGTAAGGGGAGGAAGAGAGG
GAGGTAGGTAGGGAGGGAGGGAGGGTTGGTTTGTTTTTTCCCTTCAAACA
TTTTCGTCCACTCCCCTCTCCCCTCCTCCCCCCCTCCCTCCCTCCCTCCT
TCCTTTCCTCCAGCTGCTAGGAGGGGAGACAAAGACGGGCATGCAGACCC
CGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAGCATGTACGAG
GAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACCGGCAGATTGG
GAACCTGACCAAGGCGGAGGAGTACGAGGCCTTGACCGGTACGTACGTAC
GTACGTGTGTACCTGGAATGTGGATTTGTATGTGGGTGGTAATCAATGGC
GTGGGTGTTTGTCGTACTCGTGTGTATGTGGGTATGTGTGTGTATGTAAA
GGTGTGTGGGAATGGGTTAGAGAAAAAGGAAGGAAAGACGGGCATGCCGT
TGTCCCACGTGAAGACTTTCCCTCCTTATTTATCCCCCCCCCCTCCCTCC
CTCCCTCCACCTACATTTCTCGACTCCGCACACATACCTTCCCTCTGTCC
CTCCCACCCGTCGTTCTCCAATTCCCTTCCACAACACTCAAGAGTCCCTC
CCTCCCGCCCTCCCCCCTCCTTCCCTAGGGTTCTATGTCTCTATCGCCGG
CTGGTCCTACGGCACTCCGCCCTGCGACGACGCCTGCGACGCGCAAGACC
TTGACCTCTTGAAGGCGAATGTGGCGGAATATGGGCCCGCCTCCATATGT
GTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGGTACGTCGTCTCCCGCC
CTCCCGCCCTCCCTCCCTCCCTCCCCCCCCCCCTCTCTTTCTTCCTTCAT
CCCTTCCTCCTCCCCTCTCTTTCTCCCTTCCCTCCCTCCTCCCCATTATT
CTTCTGCAGGGTGTGCTGATGACCGAGGTCTGCGGAGGCCACGGCTACAA
CTTACCTCTCCCTCCCTCCCTCCCTTCCTCTTTCCCGCTCTCCCCCTCTC
AGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGCCTACGATTCTCTC
GATCACTGCGTCAATATTGTGGGATACAATGACAACGCACCCGAGCCCTA
TTTCGTGGTTAGTCCTCAGCCCTCCCCCCCTCCCCCACTGTCTATCTCCT
TGAGCATTCTATCTCCTTGATCACTGATGTCTGAATGGCGCTCGACCACA
CCCCTCCCTCAATCCCTTCTCCCTCCTTCCCCTTCTCTCCCCCTCCCTCC
CTCCTCCCCTCCTTCGCCCCCTCCCTCCCTCCCTCCTTCGCCCCCTCCCA
GGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCCATATCCGCC
TGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTGACGTTTGTC
TCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGGGAGGGGGG
CGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGACTTTTGAAAATGT
GAAGGAGGGAGGGAGGGAGGGAAGGAAGGAGGTAGGAAG

Coding sequence (CDS) from alignment at scaffold_4:1155982..1158170+

>mRNA_2243 ID=mRNA_2243|Name=jgi.p|Nanoce1779_2|579596|organism=Nannochloropsis oceanica|type=CDS|length=5634bp|location=Sequence derived from alignment at scaffold_4:1155982..1158170+ (Nannochloropsis oceanica)
ATGGCGATTCGCAGGCCCTTGGCGTGGACTTCGGCGAGGATGGAGAGGGA
GGGCGAGGAGGAGGGAGGGAAGGAGGGAGGGGGGCCCGTGCAGAAGCGGC
CGGCAATGGTGGACTGGGTTGAGGCAGGTGCGACGACGAGCGTGGCGAAT
CAAGGACAGTGCGGGTCCTGCTGGGCGTTCTCGGCCACGTCACAGATTGA
ATCTGCCTTCATCATGGACGGGAACGCCCCGTGGCGTTTGTCGGTGCAGC
AGGTCACCTCCTGCACGGCCAATGGCTTTGGGTGTGGGGGGGGGGATACG
ATCGAAGCCTACGAGCAGCTGCTAGGAGGGGAGACAAAGACGGGCATGCA
GACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAGCATGT
ACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACCGGCAG
ATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCCTTGACCGGGTTCTA
TGTCTCTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGACGCCT
GCGACGCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAATATGGG
CCCGCCTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGGG
TGTACTAATGACGGAGGCTTGCGGGAGCTACGCCTACGATTCTCTCGATC
ACTGCGTCAATATTGTGGGATACAATGACAACGCACCCGAGCCCTATTTC
GTGGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCCATATCCG
CCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTGACGTTTG
TCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGGGAGGGG
GGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGAATGGCGATTCG
CAGGCCCTTGGCGTGGACTTCGGCGAGGATGGAGAGGGAGGGCGAGGAGG
AGGGAGGGAAGGAGGGAGGGGGGCCCGTGCAGAAGCGGCCGGCAATGGTG
GACTGGGTTGAGGCAGGTGCGACGACGAGCGTGGCGAATCAAGGACAGTG
CGGGTCCTGCTGGGCGTTCTCGGCCACGTCACAGATTGAATCTGCCTTCA
TCATGGACGGGAACGCCCCGTGGCGTTTGTCGGTGCAGCAGGTCACCTCC
TGCACGGCCAATGGCTTTGGGTGTGGGGGGGGGGATACGATCGAAGCCTA
CGAGCAGCTGCTAGGAGGGGAGACAAAGACGGGCATGCAGACCCCGGGGC
TGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAGCATGTACGAGGAGTGT
CTGTCGCCGCGATGCACGGAAAAATGCCGCAACCGGCAGATTGGGAACCT
GACCAAGGCGGAGGAGTACGAGGCCTTGACCGGGTTCTATGTCTCTATCG
CCGGCTGGTCCTACGGCACTCCGCCCTGCGACGACGCCTGCGACGCGCAA
GACCTTGACCTCTTGAAGGCGAATGTGGCGGAATATGGGCCCGCCTCCAT
ATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGGGTGTACTAATGA
CGGAGGCTTGCGGGAGCTACGCCTACGATTCTCTCGATCACTGCGTCAAT
ATTGTGGGATACAATGACAACGCACCCGAGCCCTATTTCGTGGTTCGTAA
TTCGTGGTCAACCTTGTGGGGTATGGATGGCCATATCCGCCTGTCATCGA
GGAACAACACATGCGGCTTGGCCAACGAGGTGACGTTTGTCTCGATCGCA
CCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGGGAGGGGGGCGGGGATGG
AGACAGGGAGGGAAGAGGCGATAACTGAATGGCGATTCGCAGGCCCTTGG
CGTGGACTTCGGCGAGGATGGAGAGGGAGGGCGAGGAGGAGGGAGGGAAG
GAGGGAGGGGGGCCCGTGCAGAAGCGGCCGGCAATGGTGGACTGGGTTGA
GGCAGGTGCGACGACGAGCGTGGCGAATCAAGGACAGTGCGGGTCCTGCT
GGGCGTTCTCGGCCACGTCACAGATTGAATCTGCCTTCATCATGGACGGG
AACGCCCCGTGGCGTTTGTCGGTGCAGCAGGTCACCTCCTGCACGGCCAA
TGGCTTTGGGTGTGGGGGGGGGGATACGATCGAAGCCTACGAGCAGCTGC
TAGGAGGGGAGACAAAGACGGGCATGCAGACCCCGGGGCTGGTGAGCGCC
GCCATGGCCCCTTATGTCGAGAGCATGTACGAGGAGTGTCTGTCGCCGCG
ATGCACGGAAAAATGCCGCAACCGGCAGATTGGGAACCTGACCAAGGCGG
AGGAGTACGAGGCCTTGACCGGGTTCTATGTCTCTATCGCCGGCTGGTCC
TACGGCACTCCGCCCTGCGACGACGCCTGCGACGCGCAAGACCTTGACCT
CTTGAAGGCGAATGTGGCGGAATATGGGCCCGCCTCCATATGTGTCAACG
CCGAGAGCTGGGGGTTGTACGTCGAGGGTGTACTAATGACGGAGGCTTGC
GGGAGCTACGCCTACGATTCTCTCGATCACTGCGTCAATATTGTGGGATA
CAATGACAACGCACCCGAGCCCTATTTCGTGGTTCGTAATTCGTGGTCAA
CCTTGTGGGGTATGGATGGCCATATCCGCCTGTCATCGAGGAACAACACA
TGCGGCTTGGCCAACGAGGTGACGTTTGTCTCGATCGCACCGGAGGAGGA
GGAGGAGGGGGGGAGAATGAGGGAGGGGGGCGGGGATGGAGACAGGGAGG
GAAGAGGCGATAACTGAATGGCGATTCGCAGGCCCTTGGCGTGGACTTCG
GCGAGGATGGAGAGGGAGGGCGAGGAGGAGGGAGGGAAGGAGGGAGGGGG
GCCCGTGCAGAAGCGGCCGGCAATGGTGGACTGGGTTGAGGCAGGTGCGA
CGACGAGCGTGGCGAATCAAGGACAGTGCGGGTCCTGCTGGGCGTTCTCG
GCCACGTCACAGATTGAATCTGCCTTCATCATGGACGGGAACGCCCCGTG
GCGTTTGTCGGTGCAGCAGGTCACCTCCTGCACGGCCAATGGCTTTGGGT
GTGGGGGGGGGGATACGATCGAAGCCTACGAGCAGCTGCTAGGAGGGGAG
ACAAAGACGGGCATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCC
TTATGTCGAGAGCATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAA
AATGCCGCAACCGGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAG
GCCTTGACCGGGTTCTATGTCTCTATCGCCGGCTGGTCCTACGGCACTCC
GCCCTGCGACGACGCCTGCGACGCGCAAGACCTTGACCTCTTGAAGGCGA
ATGTGGCGGAATATGGGCCCGCCTCCATATGTGTCAACGCCGAGAGCTGG
GGGTTGTACGTCGAGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGC
CTACGATTCTCTCGATCACTGCGTCAATATTGTGGGATACAATGACAACG
CACCCGAGCCCTATTTCGTGGTTCGTAATTCGTGGTCAACCTTGTGGGGT
ATGGATGGCCATATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGC
CAACGAGGTGACGTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGG
GGAGAATGAGGGAGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGAT
AACTGAATGGCGATTCGCAGGCCCTTGGCGTGGACTTCGGCGAGGATGGA
GAGGGAGGGCGAGGAGGAGGGAGGGAAGGAGGGAGGGGGGCCCGTGCAGA
AGCGGCCGGCAATGGTGGACTGGGTTGAGGCAGGTGCGACGACGAGCGTG
GCGAATCAAGGACAGTGCGGGTCCTGCTGGGCGTTCTCGGCCACGTCACA
GATTGAATCTGCCTTCATCATGGACGGGAACGCCCCGTGGCGTTTGTCGG
TGCAGCAGGTCACCTCCTGCACGGCCAATGGCTTTGGGTGTGGGGGGGGG
GATACGATCGAAGCCTACGAGCAGCTGCTAGGAGGGGAGACAAAGACGGG
CATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGA
GCATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAAC
CGGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCCTTGACCGG
GTTCTATGTCTCTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACG
ACGCCTGCGACGCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAA
TATGGGCCCGCCTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGT
CGAGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGCCTACGATTCTC
TCGATCACTGCGTCAATATTGTGGGATACAATGACAACGCACCCGAGCCC
TATTTCGTGGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCCA
TATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTGA
CGTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGG
GAGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGAATGGC
GATTCGCAGGCCCTTGGCGTGGACTTCGGCGAGGATGGAGAGGGAGGGCG
AGGAGGAGGGAGGGAAGGAGGGAGGGGGGCCCGTGCAGAAGCGGCCGGCA
ATGGTGGACTGGGTTGAGGCAGGTGCGACGACGAGCGTGGCGAATCAAGG
ACAGTGCGGGTCCTGCTGGGCGTTCTCGGCCACGTCACAGATTGAATCTG
CCTTCATCATGGACGGGAACGCCCCGTGGCGTTTGTCGGTGCAGCAGGTC
ACCTCCTGCACGGCCAATGGCTTTGGGTGTGGGGGGGGGGATACGATCGA
AGCCTACGAGCAGCTGCTAGGAGGGGAGACAAAGACGGGCATGCAGACCC
CGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAGCATGTACGAG
GAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACCGGCAGATTGG
GAACCTGACCAAGGCGGAGGAGTACGAGGCCTTGACCGGGTTCTATGTCT
CTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGACGCCTGCGAC
GCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAATATGGGCCCGC
CTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGGGTGTAC
TAATGACGGAGGCTTGCGGGAGCTACGCCTACGATTCTCTCGATCACTGC
GTCAATATTGTGGGATACAATGACAACGCACCCGAGCCCTATTTCGTGGT
TCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCCATATCCGCCTGT
CATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTGACGTTTGTCTCG
ATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGGGAGGGGGGCGG
GGATGGAGACAGGGAGGGAAGAGGCGATAACTGA

Synonyms

Publications