jgi.p|Nanoce1779_2|538435, mRNA_2242 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|538435
Unique NamemRNA_2242
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length433
Alignment locationscaffold_4:1155122..1155984 +

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Properties
Property NameValue
TranscriptId538521
TrackFilteredModels2
ProteinId538435
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1155122..1155984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538435gene_2242Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538435mRNA_2242-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2242CDS_2242Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2242 ID=mRNA_2242|Name=jgi.p|Nanoce1779_2|538435|organism=Nannochloropsis oceanica|type=mRNA|length=433bp
ACAGGCTTTCGTTGAGACCCTCAATATCATCAACATCACGTGCTACATCA
ACATGCTGCTTCTCCGATCAGCCATCCTCCTCAGCTGCCTTTTCGCCGCT
GCGAGCGCTGCCATCACGACCGCCACCACCGAGGAGCAGCGGCTACAGCA
GCACAAGCACAAGCATCGTCGTGGGTGGGTCCTGCACGGTCACGAGGTGG
CGGAAGAGGAATGGTCTCGATTCAAGAGGTACTTCCGAAAAGTCTACCTC
TCCTCCGCGGAGGAATCATACCGCTTCTCTGTCTTCCGATCCTCCCTAGC
ACAAGCCAAGCTGCGCAATGCCCATAACGTGGCAGCGGGCGGCGAACACG
TGTTTGGTGTCACCCGTTTCTCCGACGAAACGCAGGAGGAGTTCGACCGG
CGGTACAAGGGGAGAAAGAGCCATGGGAAGGGA
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protein sequence of jgi.p|Nanoce1779_2|538435

>mRNA_2242-protein ID=mRNA_2242-protein|Name=jgi.p|Nanoce1779_2|538435|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MLLLRSAILLSCLFAAASAAITTATTEEQRLQQHKHKHRRGWVLHGHEVA
EEEWSRFKRYFRKVYLSSAEESYRFSVFRSSLAQAKLRNAHNVAAGGEHV
FGVTRFSDETQEEFDRRYKGRKSHGKG
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mRNA from alignment at scaffold_4:1155122..1155984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2242 ID=mRNA_2242|Name=jgi.p|Nanoce1779_2|538435|organism=Nannochloropsis oceanica|type=mRNA|length=863bp|location=Sequence derived from alignment at scaffold_4:1155122..1155984+ (Nannochloropsis oceanica)
ACAGGCTTTCGTTGAGACCCTCAATATCATCAACATCACGTGCTACATCA
ACATGCTGCTTCTCCGATCAGCCATCCTCCTCAGCTGCCTTTTCGCCGCT
GCGAGCGCTGCCATCACGACCGCCACCACCGAGGAGCAGCGGCTACAGCA
GCACAAGCACAAGCATCGTCGTGGGTGGGTCCTGCACGGTCACGAGGTGG
CGGAAGAGGAATGGTCTCGATTCAAGAGGTACGCACGCGGAAAGGGGTTG
CTTCGACGTTAACCTTGATAATACCCGTGCGTCGTGTCCCCTCGTGTCTT
TCGTTTACCATGAGCGTGGAAATTGGCTTCAGGCCTGCATGTGTGCAAGC
CCCCTATTTCCATTCTGTCTCCTTTTGTATTCCCTTTCCCTCCCTTAATT
GCCTCCCCTCAGACCGTCTCATCTCTTCCTGTTCCGCTTGCCCATGCCCG
TCTTACCTATCCTTGGGTCTTCCACAAAGTCAGATAAATCCCTGTTAAAA
ACCATGCCGGCAGTTCCCTTCGTTCTCTCTTCTTTCATGCCCGTGTTCTG
CAAAATAACTCCACCACGCACCACTTGTAAAACTCACCTCCCTCATCCTC
CCACCCACCCTTTCTTTCTCCTTCCCTCCCCCCCTCCCTCCCTCCCAACC
ATCTTAAGGTACTTCCGAAAAGTCTACCTCTCCTCCGCGGAGGAATCATA
CCGCTTCTCTGTCTTCCGATCCTCCCTAGCACAAGCCAAGCTGCGCAATG
CCCATAACGTGGCAGCGGGCGGCGAACACGTGTTTGGTGTCACCCGTTTC
TCCGACGAAACGCAGGAGGAGTTCGACCGGCGGTACAAGGGGAGAAAGAG
CCATGGGAAGGGA
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Coding sequence (CDS) from alignment at scaffold_4:1155122..1155984+

>mRNA_2242 ID=mRNA_2242|Name=jgi.p|Nanoce1779_2|538435|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_4:1155122..1155984+ (Nannochloropsis oceanica)
ATGCTGCTTCTCCGATCAGCCATCCTCCTCAGCTGCCTTTTCGCCGCTGC
GAGCGCTGCCATCACGACCGCCACCACCGAGGAGCAGCGGCTACAGCAGC
ACAAGCACAAGCATCGTCGTGGGTGGGTCCTGCACGGTCACGAGGTGGCG
GAAGAGGAATGGTCTCGATTCAAGAGGTACTTCCGAAAAGTCTACCTCTC
CTCCGCGGAGGAATCATACCGCTTCTCTGTCTTCCGATCCTCCCTAGCAC
AAGCCAAGCTGCGCAATGCCCATAACGTGGCAGCGGGCGGCGAACACGTG
TTTGGTGTCACCCGTTTCTCCGACGAAACGCAGGAGGAGTTCGACCGGCG
GTACAAGGGGAGAAAGAGCCATGGGAAGGGAATGCTGCTTCTCCGATCAG
CCATCCTCCTCAGCTGCCTTTTCGCCGCTGCGAGCGCTGCCATCACGACC
GCCACCACCGAGGAGCAGCGGCTACAGCAGCACAAGCACAAGCATCGTCG
TGGGTGGGTCCTGCACGGTCACGAGGTGGCGGAAGAGGAATGGTCTCGAT
TCAAGAGGTACTTCCGAAAAGTCTACCTCTCCTCCGCGGAGGAATCATAC
CGCTTCTCTGTCTTCCGATCCTCCCTAGCACAAGCCAAGCTGCGCAATGC
CCATAACGTGGCAGCGGGCGGCGAACACGTGTTTGGTGTCACCCGTTTCT
CCGACGAAACGCAGGAGGAGTTCGACCGGCGGTACAAGGGGAGAAAGAGC
CATGGGAAGGGA
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Synonyms
Publications