jgi.p|Nanoce1779_2|579581, mRNA_2239 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579581
Unique NamemRNA_2239
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length622
Alignment locationscaffold_4:1146507..1147523 -

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Properties
Property NameValue
TranscriptId579667
TrackFilteredModels2
ProteinId579581
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1146507..1147523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579581gene_2239Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579581mRNA_2239-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2239CDS_2239Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2239 ID=mRNA_2239|Name=jgi.p|Nanoce1779_2|579581|organism=Nannochloropsis oceanica|type=mRNA|length=622bp
AACAGGGCTCCAGCCAGCTATACACGACCAAGCGCATAGGCATCTTAGGT
CCGCTTGCCCCGCGCGTCATCGTCATACTGTCATGGCCAAGCCTAAAAAC
CTTTTCATAAAGCTACTGTCGGCGGCAGGGACTGGCTTCTTCTACGTTAC
TCGCAAGAACCCCAAGAACGTCACTCGAAAGCTGGCATTGCGCAAGTACG
ACCCCGTGGTGCAAAAACACGTGCTCTTCACCGAGACAAAACTCAAGTAA
ACTGAGGAGATCCGACACCATCTCAGCATGCACTCGCGAATGCGCGCACA
AAAAAGGAAATGTGTCGGAAATTGATTTTCGCAGGGACAACCCCAATAGC
GAAACCATATGTAAAAATAAAAAACTTAAACGCATTGCCTCCCCCCCCCC
GCTCCTGCGTTCAGGCCTCTCTTATTTTCGGTTTGCTTCTTATCTGCTGA
ATGGCCATATTTTTGATTGTGTGTACTTTATCATCATCCTTTCCCACCTC
TCCCACCTCTCCAGTCGTCTTTTGACCACCACATGGACGACTGTTGCGGT
ATCCAAGAAGTTCATATAAATAATATAAATAACGTGCACCTTATCTTTTT
GAACCCCTCACGGCCCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|579581

>mRNA_2239-protein ID=mRNA_2239-protein|Name=jgi.p|Nanoce1779_2|579581|organism=Nannochloropsis oceanica|type=polypeptide|length=56bp
MAKPKNLFIKLLSAAGTGFFYVTRKNPKNVTRKLALRKYDPVVQKHVLFT
ETKLK*
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mRNA from alignment at scaffold_4:1146507..1147523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2239 ID=mRNA_2239|Name=jgi.p|Nanoce1779_2|579581|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp|location=Sequence derived from alignment at scaffold_4:1146507..1147523- (Nannochloropsis oceanica)
AACAGGGCTCCAGCCAGCTATACACGACCAAGCGCATAGGCATCTTAGGT
CCGCTTGCCCCGCGCGTCATCGTCATACTGTCATGGCCAAGGTAAAATCC
CCACCCGCCCTCTCCCTTCTTCTTGTCCGCAAACATGCTCTCACGCCCAC
CCCACCCCCATTCAACCCACAGCCTAAAAACCTTTTCATAAAGCTACTGT
CGGCGGCAGGGACTGGGTAAGTAATGTAGAGTTTGGAGTTTTGCGCGTGA
TGACCGCTCCTCGACCTCCCCATCTTATTCCTTCTCGTATTCCTCTTCAC
AGCTTCTTCTACGTTACTCGCAAGAACCCCAAGAACGTCACTCGAAAGCT
GGCATTGCGCAAGGTGCGTGCTGGGATGGTACAGAATGAATGATGAGAAT
GAGGGTTGGGCCATCCGAAAAACACAGCAGAGAAGGAAGTCCAGAGGGGT
ATATATGGCAGCTCATACCCCTGGCATTGATCGCGCCAGCCTATTTTCTT
ACTTATAATCTCCAGCATACCCTTGGATTGTACAGCGTTTTCCCTACCAC
TATCCACTCTGTCCTTCCTTTCCCCGTCCTCCCCATCCCAGTACGACCCC
GTGGTGCAAAAACACGTGCTCTTCACCGAGACAAAACTCAAGTAAACTGA
GGAGATCCGACACCATCTCAGCATGCACTCGCGAATGCGCGCACAAAAAA
GGAAATGTGTCGGAAATTGATTTTCGCAGGGACAACCCCAATAGCGAAAC
CATATGTAAAAATAAAAAACTTAAACGCATTGCCTCCCCCCCCCCGCTCC
TGCGTTCAGGCCTCTCTTATTTTCGGTTTGCTTCTTATCTGCTGAATGGC
CATATTTTTGATTGTGTGTACTTTATCATCATCCTTTCCCACCTCTCCCA
CCTCTCCAGTCGTCTTTTGACCACCACATGGACGACTGTTGCGGTATCCA
AGAAGTTCATATAAATAATATAAATAACGTGCACCTTATCTTTTTGAACC
CCTCACGGCCCTCCTCC
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Coding sequence (CDS) from alignment at scaffold_4:1146507..1147523-

>mRNA_2239 ID=mRNA_2239|Name=jgi.p|Nanoce1779_2|579581|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_4:1146507..1147523- (Nannochloropsis oceanica)
TACGACCCCGTGGTGCAAAAACACGTGCTCTTCACCGAGACAAAACTCAA
GTAACTTCTTCTACGTTACTCGCAAGAACCCCAAGAACGTCACTCGAAAG
CTGGCATTGCGCAAGCCTAAAAACCTTTTCATAAAGCTACTGTCGGCGGC
AGGGACTGGATGGCCAAGTACGACCCCGTGGTGCAAAAACACGTGCTCTT
CACCGAGACAAAACTCAAGTAACTTCTTCTACGTTACTCGCAAGAACCCC
AAGAACGTCACTCGAAAGCTGGCATTGCGCAAGCCTAAAAACCTTTTCAT
AAAGCTACTGTCGGCGGCAGGGACTGGATGGCCAAGTACGACCCCGTGGT
GCAAAAACACGTGCTCTTCACCGAGACAAAACTCAAGTAACTTCTTCTAC
GTTACTCGCAAGAACCCCAAGAACGTCACTCGAAAGCTGGCATTGCGCAA
GCCTAAAAACCTTTTCATAAAGCTACTGTCGGCGGCAGGGACTGGATGGC
CAAGTACGACCCCGTGGTGCAAAAACACGTGCTCTTCACCGAGACAAAAC
TCAAGTAACTTCTTCTACGTTACTCGCAAGAACCCCAAGAACGTCACTCG
AAAGCTGGCATTGCGCAAGCCTAAAAACCTTTTCATAAAGCTACTGTCGG
CGGCAGGGACTGGATGGCCAAG
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Synonyms
Publications