jgi.p|Nanoce1779_2|297647, mRNA_2238 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|297647
Unique Name	mRNA_2238
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2634
Alignment location	scaffold_4:1143338..1145971 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	297733
Track	FilteredModels2
ProteinId	297647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1143338..1145971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|297647	gene_2238	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|297647	mRNA_2238-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2238	CDS_2238	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1143338..1145971+
coding sequence from alignment at scaffold_4:1143338..1145971+

mRNA sequence

>mRNA_2238 ID=mRNA_2238|Name=jgi.p|Nanoce1779_2|297647|organism=Nannochloropsis oceanica|type=mRNA|length=2634bp
AGATGTTGTACAAATCTGTTTCTTGAATTTCCCATTTATACTCAAATAAT
AACGCTAGAGCTCCCAAGGCCATATCAAATTCGTACTGGTCATTATGACG
GCAATCGCCAAAAGCGGGGGGCTGACTTGTTCTCGACTTGCAAAGTGCTA
CCACACACACGTTTTCATGACCCGCAAAATCCTCACACTCAGGCTCCTCA
ACCGTCTCTGGGAGCCGATCCGGGCGGCACCATCTCAATTATTACTGCTA
CTTCGCCGTCGCTACGTCCTCGAAGTGCAATCATACATCATCGACGCCTC
TACCTCCCCACCAACGCCACGCCAACTCCTTACCCTGCTCGTCCGTCTGA
GGAGCGCTTCTATTCTCCTTCCGCGGCGGCAGCATCATTACATATTCCAA
CCAATTTGCAGAAGAAGCAATCCGAGCGAGCACCATGGAAGAAATCCTGG
CCCTAAAACGGGAGCTCGCCGCTGTCCAAGAAGAAGACACCACCCACCGG
CTCAGCGAACGGAACTGCGTAGAAATCATAATGAAACTAGTCAAGCTCGG
CCTCCTCGACATAATCTACACTACTAATGGCAAGGAATTCGTTACACCAC
AAAAGCTCTCCCTCGAGTTACAAGACGAGCTCCTCTCTGCCGGCGGCCGC
CTTTCCCTCGCAGACGCCCAACCCCTTCTGAATGTAGACATATCCCACAT
CGAAAAGGCAGCAGCAGACATTGTTTTAAACGACCCAGAGGTTTTCTTGA
TCAACGGAGAACTAATAACAGCATGGCACCTAGATGGAGTGGTGGAAGAG
GTCTTATCTCACACTCTTCCTGGTGCTGGCGGGAAGGTCTCCATGGCGAC
TTTGGCCGTACAAGTTTTCAATCTTCCTGTACCCATTACTGAAGAAGCCA
TCAAGACCCGCCTTCTCTCCAGAAACAACCGACCAGCAGCAAAATTAAAG
CATGGTATCCTCTTCACAGCAGCGTACGAAGAGACGCAACTCGCTCGAAT
CCGCGGAGTGCTCGCAGGAGTTACTCGCCCTATCTCCACCGGTGAATTGA
TTAACATTTATGGCTTTGACGAGGGCATGATGGAAGAAGCACTACCTAGA
TTCCTACAAGAAAAGAGGTTGGTGGGTTCGTTGCGTGGGAGGGAGTACGT
CCCGTTGGCTTTTAATCGGACACAACGTGAGTGCCTGGACCGATTTTTTG
CCCAGAATGGTTTTTTGGAATTTGAACGCGCGAGGAAGATGCAGGTGTAC
CGACCGTTAGAGTTTATAAGACAGTCTTTTCCTCATGCAATTTTGGTAGG
GAAACAGCTTGTGGTGGCCGAATCAGTACTGAGAGAGTTGGAAGGACAGG
TGGAGGAATGTATTTTGCTGAGGGGTTGGTTGGATGTGTTGAGCGTCCTC
CCCCCCGTCCTTTCTTCATCCTCGTCAGAAGCCGCGCTTCTGTTGGCGGA
ATGTCGGTGTGTGGGCGCCAAGAGGGAGCAAGGAGCATTGGCTGTAGCAG
GGGTTTATGCAGTGAGCAAGGCTTTCCTTCATGATCTTCTTAGAGAGATG
GAAGCACCCATCAAGGCACGTGCAGTGGAGCGGCAGCAGCAGCAGCAAGG
GAAGATAGAGGATGGGGAAGGAGTAGCTGAAGTTTCATATGAGGGTGGGG
GGAAGAAGAGCACCAAGAGCCGGATTGATAAATCAGCACCAGGGGCAGTA
GCAGTGTCCTTTACTACATCCGAAATCGCGGCTATCATCCTGTCGTGGCA
CCAAACTTTGGACGCTTACCCCGCCCTCACCACCGCTCTTGCCCACGAAC
TTCAACCAGAGGTAGATAAATTGTTTTCCACTCAAACAGCGGCAGCAACA
GTAGCAGCTGCTGCCGCCGCCGCGCAGCTCACGGCTTCTATGACTATCGG
TGGAGAAGGAGGGGGAGGAGGAGTAGCTACCGCACGGAGGCAGGCACAAA
AGGACTTTGAGAAGGAGCTGGAAAGCGCAACAATGATCATTCAGTTGTTA
GCTAAGGGAGTAAAAGCCACGTCATTTGTCTCCGAGGAAGATAGAAGGGA
AATGACTTTCTTCATTCTTAAATCCCGCGGAGCTCAACTCGCCGATCTGA
TCTCCCGGCAGGCCAGTACCCTGCATGATGTCCCCTACACCGCGCTGCCT
TCCATCCCTCCCTCCTCGTCCTCGCTACTTCCCTCGGCTTCCTTTCCTTG
TATCACTGTGGAGCAACGGAATGTGTTCAAGAGTGAATTACCGAAACCAC
TGGGCGATGCCCTTGTAAACGTGTGGACCCTGATCGTCAAGGGGAAGGCA
AAGGAGAAGAAAAACAGCACGAATCCTGATAAGAATACACACCAAAAAAT
TGCTGCTAAGAGTGCTGCTGCTCCTGCTGCCCCTGCTCCACTTGACGACC
TCTGCGAGTCCCTCCTCTCCCAGGTCCTCCCAGCCTTGGACGCTGTCCCT
CGCAAGCTCGACAAGAAAAAAGAGAAAAAAATGGTACGGTGTTAGCGAAT
TTATTCAGAGAGAAGTAAGAGTATTAACCTCACTCGAAGTCACTCAGAGA
GAACAATATGAGGATAAATCTGACAGATGTATTCCTATGTATGTTTATAT
GTGCATGTCATTATATATTACATATACATGTCTG

protein sequence of jgi.p|Nanoce1779_2|297647

>mRNA_2238-protein ID=mRNA_2238-protein|Name=jgi.p|Nanoce1779_2|297647|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MEEILALKRELAAVQEEDTTHRLSERNCVEIIMKLVKLGLLDIIYTTNGK
EFVTPQKLSLELQDELLSAGGRLSLADAQPLLNVDISHIEKAAADIVLND
PEVFLINGELITAWHLDGVVEEVLSHTLPGAGGKVSMATLAVQVFNLPVP
ITEEAIKTRLLSRNNRPAAKLKHGILFTAAYEETQLARIRGVLAGVTRPI
STGELINIYGFDEGMMEEALPRFLQEKRLVGSLRGREYVPLAFNRTQREC
LDRFFAQNGFLEFERARKMQVYRPLEFIRQSFPHAILVGKQLVVAESVLR
ELEGQVEECILLRGWLDVLSVLPPVLSSSSSEAALLLAECRCVGAKREQG
ALAVAGVYAVSKAFLHDLLREMEAPIKARAVERQQQQQGKIEDGEGVAEV
SYEGGGKKSTKSRIDKSAPGAVAVSFTTSEIAAIILSWHQTLDAYPALTT
ALAHELQPEVDKLFSTQTAAATVAAAAAAAQLTASMTIGGEGGGGGVATA
RRQAQKDFEKELESATMIIQLLAKGVKATSFVSEEDRREMTFFILKSRGA
QLADLISRQASTLHDVPYTALPSIPPSSSSLLPSASFPCITVEQRNVFKS
ELPKPLGDALVNVWTLIVKGKAKEKKNSTNPDKNTHQKIAAKSAAAPAAP
APLDDLCESLLSQVLPALDAVPRKLDKKKEKKMVRC*

mRNA from alignment at scaffold_4:1143338..1145971+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2238 ID=mRNA_2238|Name=jgi.p|Nanoce1779_2|297647|organism=Nannochloropsis oceanica|type=mRNA|length=2634bp|location=Sequence derived from alignment at scaffold_4:1143338..1145971+ (Nannochloropsis oceanica)
AGATGTTGTACAAATCTGTTTCTTGAATTTCCCATTTATACTCAAATAAT
AACGCTAGAGCTCCCAAGGCCATATCAAATTCGTACTGGTCATTATGACG
GCAATCGCCAAAAGCGGGGGGCTGACTTGTTCTCGACTTGCAAAGTGCTA
CCACACACACGTTTTCATGACCCGCAAAATCCTCACACTCAGGCTCCTCA
ACCGTCTCTGGGAGCCGATCCGGGCGGCACCATCTCAATTATTACTGCTA
CTTCGCCGTCGCTACGTCCTCGAAGTGCAATCATACATCATCGACGCCTC
TACCTCCCCACCAACGCCACGCCAACTCCTTACCCTGCTCGTCCGTCTGA
GGAGCGCTTCTATTCTCCTTCCGCGGCGGCAGCATCATTACATATTCCAA
CCAATTTGCAGAAGAAGCAATCCGAGCGAGCACCATGGAAGAAATCCTGG
CCCTAAAACGGGAGCTCGCCGCTGTCCAAGAAGAAGACACCACCCACCGG
CTCAGCGAACGGAACTGCGTAGAAATCATAATGAAACTAGTCAAGCTCGG
CCTCCTCGACATAATCTACACTACTAATGGCAAGGAATTCGTTACACCAC
AAAAGCTCTCCCTCGAGTTACAAGACGAGCTCCTCTCTGCCGGCGGCCGC
CTTTCCCTCGCAGACGCCCAACCCCTTCTGAATGTAGACATATCCCACAT
CGAAAAGGCAGCAGCAGACATTGTTTTAAACGACCCAGAGGTTTTCTTGA
TCAACGGAGAACTAATAACAGCATGGCACCTAGATGGAGTGGTGGAAGAG
GTCTTATCTCACACTCTTCCTGGTGCTGGCGGGAAGGTCTCCATGGCGAC
TTTGGCCGTACAAGTTTTCAATCTTCCTGTACCCATTACTGAAGAAGCCA
TCAAGACCCGCCTTCTCTCCAGAAACAACCGACCAGCAGCAAAATTAAAG
CATGGTATCCTCTTCACAGCAGCGTACGAAGAGACGCAACTCGCTCGAAT
CCGCGGAGTGCTCGCAGGAGTTACTCGCCCTATCTCCACCGGTGAATTGA
TTAACATTTATGGCTTTGACGAGGGCATGATGGAAGAAGCACTACCTAGA
TTCCTACAAGAAAAGAGGTTGGTGGGTTCGTTGCGTGGGAGGGAGTACGT
CCCGTTGGCTTTTAATCGGACACAACGTGAGTGCCTGGACCGATTTTTTG
CCCAGAATGGTTTTTTGGAATTTGAACGCGCGAGGAAGATGCAGGTGTAC
CGACCGTTAGAGTTTATAAGACAGTCTTTTCCTCATGCAATTTTGGTAGG
GAAACAGCTTGTGGTGGCCGAATCAGTACTGAGAGAGTTGGAAGGACAGG
TGGAGGAATGTATTTTGCTGAGGGGTTGGTTGGATGTGTTGAGCGTCCTC
CCCCCCGTCCTTTCTTCATCCTCGTCAGAAGCCGCGCTTCTGTTGGCGGA
ATGTCGGTGTGTGGGCGCCAAGAGGGAGCAAGGAGCATTGGCTGTAGCAG
GGGTTTATGCAGTGAGCAAGGCTTTCCTTCATGATCTTCTTAGAGAGATG
GAAGCACCCATCAAGGCACGTGCAGTGGAGCGGCAGCAGCAGCAGCAAGG
GAAGATAGAGGATGGGGAAGGAGTAGCTGAAGTTTCATATGAGGGTGGGG
GGAAGAAGAGCACCAAGAGCCGGATTGATAAATCAGCACCAGGGGCAGTA
GCAGTGTCCTTTACTACATCCGAAATCGCGGCTATCATCCTGTCGTGGCA
CCAAACTTTGGACGCTTACCCCGCCCTCACCACCGCTCTTGCCCACGAAC
TTCAACCAGAGGTAGATAAATTGTTTTCCACTCAAACAGCGGCAGCAACA
GTAGCAGCTGCTGCCGCCGCCGCGCAGCTCACGGCTTCTATGACTATCGG
TGGAGAAGGAGGGGGAGGAGGAGTAGCTACCGCACGGAGGCAGGCACAAA
AGGACTTTGAGAAGGAGCTGGAAAGCGCAACAATGATCATTCAGTTGTTA
GCTAAGGGAGTAAAAGCCACGTCATTTGTCTCCGAGGAAGATAGAAGGGA
AATGACTTTCTTCATTCTTAAATCCCGCGGAGCTCAACTCGCCGATCTGA
TCTCCCGGCAGGCCAGTACCCTGCATGATGTCCCCTACACCGCGCTGCCT
TCCATCCCTCCCTCCTCGTCCTCGCTACTTCCCTCGGCTTCCTTTCCTTG
TATCACTGTGGAGCAACGGAATGTGTTCAAGAGTGAATTACCGAAACCAC
TGGGCGATGCCCTTGTAAACGTGTGGACCCTGATCGTCAAGGGGAAGGCA
AAGGAGAAGAAAAACAGCACGAATCCTGATAAGAATACACACCAAAAAAT
TGCTGCTAAGAGTGCTGCTGCTCCTGCTGCCCCTGCTCCACTTGACGACC
TCTGCGAGTCCCTCCTCTCCCAGGTCCTCCCAGCCTTGGACGCTGTCCCT
CGCAAGCTCGACAAGAAAAAAGAGAAAAAAATGGTACGGTGTTAGCGAAT
TTATTCAGAGAGAAGTAAGAGTATTAACCTCACTCGAAGTCACTCAGAGA
GAACAATATGAGGATAAATCTGACAGATGTATTCCTATGTATGTTTATAT
GTGCATGTCATTATATATTACATATACATGTCTG

Coding sequence (CDS) from alignment at scaffold_4:1143338..1145971+

>mRNA_2238 ID=mRNA_2238|Name=jgi.p|Nanoce1779_2|297647|organism=Nannochloropsis oceanica|type=CDS|length=2061bp|location=Sequence derived from alignment at scaffold_4:1143338..1145971+ (Nannochloropsis oceanica)
ATGGAAGAAATCCTGGCCCTAAAACGGGAGCTCGCCGCTGTCCAAGAAGA
AGACACCACCCACCGGCTCAGCGAACGGAACTGCGTAGAAATCATAATGA
AACTAGTCAAGCTCGGCCTCCTCGACATAATCTACACTACTAATGGCAAG
GAATTCGTTACACCACAAAAGCTCTCCCTCGAGTTACAAGACGAGCTCCT
CTCTGCCGGCGGCCGCCTTTCCCTCGCAGACGCCCAACCCCTTCTGAATG
TAGACATATCCCACATCGAAAAGGCAGCAGCAGACATTGTTTTAAACGAC
CCAGAGGTTTTCTTGATCAACGGAGAACTAATAACAGCATGGCACCTAGA
TGGAGTGGTGGAAGAGGTCTTATCTCACACTCTTCCTGGTGCTGGCGGGA
AGGTCTCCATGGCGACTTTGGCCGTACAAGTTTTCAATCTTCCTGTACCC
ATTACTGAAGAAGCCATCAAGACCCGCCTTCTCTCCAGAAACAACCGACC
AGCAGCAAAATTAAAGCATGGTATCCTCTTCACAGCAGCGTACGAAGAGA
CGCAACTCGCTCGAATCCGCGGAGTGCTCGCAGGAGTTACTCGCCCTATC
TCCACCGGTGAATTGATTAACATTTATGGCTTTGACGAGGGCATGATGGA
AGAAGCACTACCTAGATTCCTACAAGAAAAGAGGTTGGTGGGTTCGTTGC
GTGGGAGGGAGTACGTCCCGTTGGCTTTTAATCGGACACAACGTGAGTGC
CTGGACCGATTTTTTGCCCAGAATGGTTTTTTGGAATTTGAACGCGCGAG
GAAGATGCAGGTGTACCGACCGTTAGAGTTTATAAGACAGTCTTTTCCTC
ATGCAATTTTGGTAGGGAAACAGCTTGTGGTGGCCGAATCAGTACTGAGA
GAGTTGGAAGGACAGGTGGAGGAATGTATTTTGCTGAGGGGTTGGTTGGA
TGTGTTGAGCGTCCTCCCCCCCGTCCTTTCTTCATCCTCGTCAGAAGCCG
CGCTTCTGTTGGCGGAATGTCGGTGTGTGGGCGCCAAGAGGGAGCAAGGA
GCATTGGCTGTAGCAGGGGTTTATGCAGTGAGCAAGGCTTTCCTTCATGA
TCTTCTTAGAGAGATGGAAGCACCCATCAAGGCACGTGCAGTGGAGCGGC
AGCAGCAGCAGCAAGGGAAGATAGAGGATGGGGAAGGAGTAGCTGAAGTT
TCATATGAGGGTGGGGGGAAGAAGAGCACCAAGAGCCGGATTGATAAATC
AGCACCAGGGGCAGTAGCAGTGTCCTTTACTACATCCGAAATCGCGGCTA
TCATCCTGTCGTGGCACCAAACTTTGGACGCTTACCCCGCCCTCACCACC
GCTCTTGCCCACGAACTTCAACCAGAGGTAGATAAATTGTTTTCCACTCA
AACAGCGGCAGCAACAGTAGCAGCTGCTGCCGCCGCCGCGCAGCTCACGG
CTTCTATGACTATCGGTGGAGAAGGAGGGGGAGGAGGAGTAGCTACCGCA
CGGAGGCAGGCACAAAAGGACTTTGAGAAGGAGCTGGAAAGCGCAACAAT
GATCATTCAGTTGTTAGCTAAGGGAGTAAAAGCCACGTCATTTGTCTCCG
AGGAAGATAGAAGGGAAATGACTTTCTTCATTCTTAAATCCCGCGGAGCT
CAACTCGCCGATCTGATCTCCCGGCAGGCCAGTACCCTGCATGATGTCCC
CTACACCGCGCTGCCTTCCATCCCTCCCTCCTCGTCCTCGCTACTTCCCT
CGGCTTCCTTTCCTTGTATCACTGTGGAGCAACGGAATGTGTTCAAGAGT
GAATTACCGAAACCACTGGGCGATGCCCTTGTAAACGTGTGGACCCTGAT
CGTCAAGGGGAAGGCAAAGGAGAAGAAAAACAGCACGAATCCTGATAAGA
ATACACACCAAAAAATTGCTGCTAAGAGTGCTGCTGCTCCTGCTGCCCCT
GCTCCACTTGACGACCTCTGCGAGTCCCTCCTCTCCCAGGTCCTCCCAGC
CTTGGACGCTGTCCCTCGCAAGCTCGACAAGAAAAAAGAGAAAAAAATGG
TACGGTGTTAG

Synonyms

Publications