jgi.p|Nanoce1779_2|579578, mRNA_2237 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579578
Unique NamemRNA_2237
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1255
Alignment locationscaffold_4:1140658..1141912 -

Link to JBrowse

Properties
Property NameValue
TranscriptId579664
TrackFilteredModels2
ProteinId579578
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1140658..1141912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579578gene_2237Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579578mRNA_2237-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2237CDS_2237Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2237 ID=mRNA_2237|Name=jgi.p|Nanoce1779_2|579578|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp
ACAGGCTTGTTGTTTGGTCAAGGAGGGGCACACGAAGGAGGGCAGCCAGA
AGCAGGGGATAGGAACGCAGGCAGTACCAAGCCTACGCGCAAGAATGTCG
GCTTCCGTCGTCAGTGCCCTCGGGGCTGCAGCCCGAGCCGCGGGGCGGGC
TTTTGAGAACGCAGGCAAGCTTTTAGAAGTCACCCCTTATGTCGAGCACC
TGGCCCCGTCGACCAAGGTTCTGTCGCATGCTGGCAAGAGCCCCGCAATT
CACGAGACCGTTTTTGTCGCCCCATCCGCCAGCATAATCGGTCATGTCCA
AGTCGGCAAGGGTTCCTCGGTGTGGTACGGCGCCACCTTGCGTGGCGATG
TCCACAGCATCACAGTCGGAGAACAAACGACGATCGGCGACCGCGCAATC
GTGCACGTAGCCAAGCTTCGTGGTGATGCCCCCACCAAAATTGGGAGCCG
TGTCAATATTGGCGCTCGCGCTGTCATCCATGCCTGTACGCTCGAGGACG
AGTCTACCGTGGGAGCCGGGGCGCAGGTTCTGGATAAGGCTGTAGTCAAA
ACGCACGCGGCCTTGGCGCCTGGTGCAGTGCTTACCCCTGGGAAGACTGT
GCCATCGGGGCAGCTTTGGGCGGGAGTACCTGCCAAATTTGTGCGTGAAT
TGACGGCGGAGGAGATTGCGAATATCAAGCGGGAAGCCGTAGCATCTTTC
GAGCTGGCGACAGTGCACAAAGCAGAGACGACCAAGGATTATTTGCAGGT
GATGGAGGACGAGGCGGCCTGGAAGGACAAACAGCAACGATCACCTGATT
ACTGGCCTCGGCTGAAGGGGGATGCGATCCGTGACCCGGCAGAGATTCCG
GGATTTGGTGTGCCTGGGCGTATTTTTAATCATCCTCTGACGACGCCCTT
GCCGGAAGGATCGGACGGTCGGCCACAGGGAGGGGAGAGGGAAAAGTAAA
TGAGGAAAGGGAAGAAGTCAGAAGGAAGATAAAGGATAGGGGAGAGATGG
AGGTGGTGTATGGGATATAGTGTAGTGCACGCGTGTGTCTTGTTTTTTTT
TGGGGGTGGAATTCTGACGTGCATATTTTAATTGAAGGTGGAGGTGAGAG
ATAGGATGGGTCTTCGCCCATGCATCAGTAGGAAAAGACATTGTGATCGG
AAAAGAAAAAAGAGAATGAAAGTGGGAAATGCGGCGACGTCAACTAAGAA
GCAGCCACAATTTAGGGGATTCATACAAGAAGCATAATATCTTGATTTTT
TTGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|579578

>mRNA_2237-protein ID=mRNA_2237-protein|Name=jgi.p|Nanoce1779_2|579578|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSASVVSALGAAARAAGRAFENAGKLLEVTPYVEHLAPSTKVLSHAGKSP
AIHETVFVAPSASIIGHVQVGKGSSVWYGATLRGDVHSITVGEQTTIGDR
AIVHVAKLRGDAPTKIGSRVNIGARAVIHACTLEDESTVGAGAQVLDKAV
VKTHAALAPGAVLTPGKTVPSGQLWAGVPAKFVRELTAEEIANIKREAVA
SFELATVHKAETTKDYLQVMEDEAAWKDKQQRSPDYWPRLKGDAIRDPAE
IPGFGVPGRIFNHPLTTPLPEGSDGRPQGGEREK*
back to top

mRNA from alignment at scaffold_4:1140658..1141912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2237 ID=mRNA_2237|Name=jgi.p|Nanoce1779_2|579578|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp|location=Sequence derived from alignment at scaffold_4:1140658..1141912- (Nannochloropsis oceanica)
ACAGGCTTGTTGTTTGGTCAAGGAGGGGCACACGAAGGAGGGCAGCCAGA
AGCAGGGGATAGGAACGCAGGCAGTACCAAGCCTACGCGCAAGAATGTCG
GCTTCCGTCGTCAGTGCCCTCGGGGCTGCAGCCCGAGCCGCGGGGCGGGC
TTTTGAGAACGCAGGCAAGCTTTTAGAAGTCACCCCTTATGTCGAGCACC
TGGCCCCGTCGACCAAGGTTCTGTCGCATGCTGGCAAGAGCCCCGCAATT
CACGAGACCGTTTTTGTCGCCCCATCCGCCAGCATAATCGGTCATGTCCA
AGTCGGCAAGGGTTCCTCGGTGTGGTACGGCGCCACCTTGCGTGGCGATG
TCCACAGCATCACAGTCGGAGAACAAACGACGATCGGCGACCGCGCAATC
GTGCACGTAGCCAAGCTTCGTGGTGATGCCCCCACCAAAATTGGGAGCCG
TGTCAATATTGGCGCTCGCGCTGTCATCCATGCCTGTACGCTCGAGGACG
AGTCTACCGTGGGAGCCGGGGCGCAGGTTCTGGATAAGGCTGTAGTCAAA
ACGCACGCGGCCTTGGCGCCTGGTGCAGTGCTTACCCCTGGGAAGACTGT
GCCATCGGGGCAGCTTTGGGCGGGAGTACCTGCCAAATTTGTGCGTGAAT
TGACGGCGGAGGAGATTGCGAATATCAAGCGGGAAGCCGTAGCATCTTTC
GAGCTGGCGACAGTGCACAAAGCAGAGACGACCAAGGATTATTTGCAGGT
GATGGAGGACGAGGCGGCCTGGAAGGACAAACAGCAACGATCACCTGATT
ACTGGCCTCGGCTGAAGGGGGATGCGATCCGTGACCCGGCAGAGATTCCG
GGATTTGGTGTGCCTGGGCGTATTTTTAATCATCCTCTGACGACGCCCTT
GCCGGAAGGATCGGACGGTCGGCCACAGGGAGGGGAGAGGGAAAAGTAAA
TGAGGAAAGGGAAGAAGTCAGAAGGAAGATAAAGGATAGGGGAGAGATGG
AGGTGGTGTATGGGATATAGTGTAGTGCACGCGTGTGTCTTGTTTTTTTT
TGGGGGTGGAATTCTGACGTGCATATTTTAATTGAAGGTGGAGGTGAGAG
ATAGGATGGGTCTTCGCCCATGCATCAGTAGGAAAAGACATTGTGATCGG
AAAAGAAAAAAGAGAATGAAAGTGGGAAATGCGGCGACGTCAACTAAGAA
GCAGCCACAATTTAGGGGATTCATACAAGAAGCATAATATCTTGATTTTT
TTGAA
back to top

Coding sequence (CDS) from alignment at scaffold_4:1140658..1141912-

>mRNA_2237 ID=mRNA_2237|Name=jgi.p|Nanoce1779_2|579578|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_4:1140658..1141912- (Nannochloropsis oceanica)
ATGTCGGCTTCCGTCGTCAGTGCCCTCGGGGCTGCAGCCCGAGCCGCGGG
GCGGGCTTTTGAGAACGCAGGCAAGCTTTTAGAAGTCACCCCTTATGTCG
AGCACCTGGCCCCGTCGACCAAGGTTCTGTCGCATGCTGGCAAGAGCCCC
GCAATTCACGAGACCGTTTTTGTCGCCCCATCCGCCAGCATAATCGGTCA
TGTCCAAGTCGGCAAGGGTTCCTCGGTGTGGTACGGCGCCACCTTGCGTG
GCGATGTCCACAGCATCACAGTCGGAGAACAAACGACGATCGGCGACCGC
GCAATCGTGCACGTAGCCAAGCTTCGTGGTGATGCCCCCACCAAAATTGG
GAGCCGTGTCAATATTGGCGCTCGCGCTGTCATCCATGCCTGTACGCTCG
AGGACGAGTCTACCGTGGGAGCCGGGGCGCAGGTTCTGGATAAGGCTGTA
GTCAAAACGCACGCGGCCTTGGCGCCTGGTGCAGTGCTTACCCCTGGGAA
GACTGTGCCATCGGGGCAGCTTTGGGCGGGAGTACCTGCCAAATTTGTGC
GTGAATTGACGGCGGAGGAGATTGCGAATATCAAGCGGGAAGCCGTAGCA
TCTTTCGAGCTGGCGACAGTGCACAAAGCAGAGACGACCAAGGATTATTT
GCAGGTGATGGAGGACGAGGCGGCCTGGAAGGACAAACAGCAACGATCAC
CTGATTACTGGCCTCGGCTGAAGGGGGATGCGATCCGTGACCCGGCAGAG
ATTCCGGGATTTGGTGTGCCTGGGCGTATTTTTAATCATCCTCTGACGAC
GCCCTTGCCGGAAGGATCGGACGGTCGGCCACAGGGAGGGGAGAGGGAAA
AGTAA
back to top
Synonyms
Publications