jgi.p|Nanoce1779_2|579568, mRNA_2234 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579568
Unique NamemRNA_2234
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1212
Alignment locationscaffold_4:1131075..1132286 +

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Properties
Property NameValue
TranscriptId579654
TrackFilteredModels2
ProteinId579568
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1131075..1132286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579568gene_2234Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579568mRNA_2234-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2234CDS_2234Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2234 ID=mRNA_2234|Name=jgi.p|Nanoce1779_2|579568|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
AGCCCCCGCGACAGGCAGCCCCAGAGTCGCTTGCTGATATCACCAGGAGT
GCAGACAATCTCCTCTCGTCCAACTAGCAGCTAGCTACGGGCATACCCAA
GACCACCTCACCGCACCGCTTCACACGCCATGGCTAAGTCCACGTCCCGC
ACCGCCGCGGCGCTGATCCAGAGGGTGATAACGCAGGGCATGAGAGGAGG
ACGGGGAGTTTCGTCCATCTCTTCGTCTCTTGCGTGCGCGAGCGCTGTAG
GAATGGCCTCTCTAGCAGCAACGTCCGCTGCCGCCTCCTCCTTGGCAATG
GCCCGAGCACCCACGACAACACCAGCGGTGACAATAGTAGGGCAGCAGCA
AAGAGCTTGGGCGTCCACCGTGGCCGCCGTCATCAGCCACGACAACATGT
CTGGGGCGAGCCAGCAGCACCAGCAACATGAGCACCAAGCACCTTCATCA
TTCCCATCTTCCACCGGCCCGCAACCCAGAACAAACACCGCCACTGCCAC
CGCGACCGCTTCTTCATCCTCTCAATCCCTTCGTTATGACGACAATAGCA
ACAGCAGCACGACCGGCCCTACTCCCCCCAACTCCTCCCCCTCGTACCCT
CCTACCCGTCGCACCCGCGCAGCCCCCCTCCAGCTCACGGATCGGGCCGT
CGCTCGTATCAAAGAGCTCCTCGCCTCTAAAGGCCCCAGCGTGGTGGGGG
TGCGTCTGGGCACGAAAAAGAGGGGTTGCAATGGGTTGTCTTACACGATG
AACTACACCGAGACCCGGCCGAAATTTGACGAGGAGGTGACTGTGGGAGG
GGTGACTGTGTTCGTGGAGCCCTCTGCATTAATGCACGTGGTCGGCACGA
GAATGGACTTTGAAGAGACGGAGCTGTCGAGAGAGTTTACATTTCACAAT
CCAAACGCGAAGGGCTCGTGTGGGTGTGGGGAGAGCTTTAATGTTTAAGG
GGGGGGGGTTCAGGATGAAGACATGGAGCCTCTCTGTCGAGGGATAGGGT
GGATGTATGTCCTTCATGATGAAGACACGGTATTGTAAAGAAGGTGGATG
CGCATGGTTGGTAATGATACGCAACAGGCACATGACTGCACTGGCCTCCC
TCTACCACTGGGAGTGGAAGCAGCAGCTTTTACGTGTTCTGGCGAGAACA
GAAAGGAAAAATGGATGAGATCAGGAACCTGAAATCAAATTTAGTACAGC
TTATGTCGATCC
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protein sequence of jgi.p|Nanoce1779_2|579568

>mRNA_2234-protein ID=mRNA_2234-protein|Name=jgi.p|Nanoce1779_2|579568|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MAKSTSRTAAALIQRVITQGMRGGRGVSSISSSLACASAVGMASLAATSA
AASSLAMARAPTTTPAVTIVGQQQRAWASTVAAVISHDNMSGASQQHQQH
EHQAPSSFPSSTGPQPRTNTATATATASSSSQSLRYDDNSNSSTTGPTPP
NSSPSYPPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGC
NGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELS
REFTFHNPNAKGSCGCGESFNV*
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mRNA from alignment at scaffold_4:1131075..1132286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2234 ID=mRNA_2234|Name=jgi.p|Nanoce1779_2|579568|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_4:1131075..1132286+ (Nannochloropsis oceanica)
AGCCCCCGCGACAGGCAGCCCCAGAGTCGCTTGCTGATATCACCAGGAGT
GCAGACAATCTCCTCTCGTCCAACTAGCAGCTAGCTACGGGCATACCCAA
GACCACCTCACCGCACCGCTTCACACGCCATGGCTAAGTCCACGTCCCGC
ACCGCCGCGGCGCTGATCCAGAGGGTGATAACGCAGGGCATGAGAGGAGG
ACGGGGAGTTTCGTCCATCTCTTCGTCTCTTGCGTGCGCGAGCGCTGTAG
GAATGGCCTCTCTAGCAGCAACGTCCGCTGCCGCCTCCTCCTTGGCAATG
GCCCGAGCACCCACGACAACACCAGCGGTGACAATAGTAGGGCAGCAGCA
AAGAGCTTGGGCGTCCACCGTGGCCGCCGTCATCAGCCACGACAACATGT
CTGGGGCGAGCCAGCAGCACCAGCAACATGAGCACCAAGCACCTTCATCA
TTCCCATCTTCCACCGGCCCGCAACCCAGAACAAACACCGCCACTGCCAC
CGCGACCGCTTCTTCATCCTCTCAATCCCTTCGTTATGACGACAATAGCA
ACAGCAGCACGACCGGCCCTACTCCCCCCAACTCCTCCCCCTCGTACCCT
CCTACCCGTCGCACCCGCGCAGCCCCCCTCCAGCTCACGGATCGGGCCGT
CGCTCGTATCAAAGAGCTCCTCGCCTCTAAAGGCCCCAGCGTGGTGGGGG
TGCGTCTGGGCACGAAAAAGAGGGGTTGCAATGGGTTGTCTTACACGATG
AACTACACCGAGACCCGGCCGAAATTTGACGAGGAGGTGACTGTGGGAGG
GGTGACTGTGTTCGTGGAGCCCTCTGCATTAATGCACGTGGTCGGCACGA
GAATGGACTTTGAAGAGACGGAGCTGTCGAGAGAGTTTACATTTCACAAT
CCAAACGCGAAGGGCTCGTGTGGGTGTGGGGAGAGCTTTAATGTTTAAGG
GGGGGGGGTTCAGGATGAAGACATGGAGCCTCTCTGTCGAGGGATAGGGT
GGATGTATGTCCTTCATGATGAAGACACGGTATTGTAAAGAAGGTGGATG
CGCATGGTTGGTAATGATACGCAACAGGCACATGACTGCACTGGCCTCCC
TCTACCACTGGGAGTGGAAGCAGCAGCTTTTACGTGTTCTGGCGAGAACA
GAAAGGAAAAATGGATGAGATCAGGAACCTGAAATCAAATTTAGTACAGC
TTATGTCGATCC
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Coding sequence (CDS) from alignment at scaffold_4:1131075..1132286+

>mRNA_2234 ID=mRNA_2234|Name=jgi.p|Nanoce1779_2|579568|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_4:1131075..1132286+ (Nannochloropsis oceanica)
ATGGCTAAGTCCACGTCCCGCACCGCCGCGGCGCTGATCCAGAGGGTGAT
AACGCAGGGCATGAGAGGAGGACGGGGAGTTTCGTCCATCTCTTCGTCTC
TTGCGTGCGCGAGCGCTGTAGGAATGGCCTCTCTAGCAGCAACGTCCGCT
GCCGCCTCCTCCTTGGCAATGGCCCGAGCACCCACGACAACACCAGCGGT
GACAATAGTAGGGCAGCAGCAAAGAGCTTGGGCGTCCACCGTGGCCGCCG
TCATCAGCCACGACAACATGTCTGGGGCGAGCCAGCAGCACCAGCAACAT
GAGCACCAAGCACCTTCATCATTCCCATCTTCCACCGGCCCGCAACCCAG
AACAAACACCGCCACTGCCACCGCGACCGCTTCTTCATCCTCTCAATCCC
TTCGTTATGACGACAATAGCAACAGCAGCACGACCGGCCCTACTCCCCCC
AACTCCTCCCCCTCGTACCCTCCTACCCGTCGCACCCGCGCAGCCCCCCT
CCAGCTCACGGATCGGGCCGTCGCTCGTATCAAAGAGCTCCTCGCCTCTA
AAGGCCCCAGCGTGGTGGGGGTGCGTCTGGGCACGAAAAAGAGGGGTTGC
AATGGGTTGTCTTACACGATGAACTACACCGAGACCCGGCCGAAATTTGA
CGAGGAGGTGACTGTGGGAGGGGTGACTGTGTTCGTGGAGCCCTCTGCAT
TAATGCACGTGGTCGGCACGAGAATGGACTTTGAAGAGACGGAGCTGTCG
AGAGAGTTTACATTTCACAATCCAAACGCGAAGGGCTCGTGTGGGTGTGG
GGAGAGCTTTAATGTTTAA
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Synonyms
Publications