Properties
| Property Name | Value |
|---|
| TranscriptId | 524810 |
| Track | FilteredModels2 |
| ProteinId | 524724 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1116941..1119099 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2230 ID=mRNA_2230|Name=jgi.p|Nanoce1779_2|524724|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
ATGAAGGAGAAGACCCAACGCGTGGTCGTGACAGGCCTAGGGCCCATATC
GGCCGTAGGGATCGGCAAGGACGATTTCTGGAAGGCGTTGCTAGAGGGGA
AGTGCGGCATTGACAAGATCAGTGGCTTTGACCCTAGTGGATTGACGTGC
CAAATTGGTGCGGAAGTGAAGGGTTTTGATGCGAAGCCGTATTTTAAGGA
CAAGAAAAGCGCCGTCCGTAACGACCGTGTGACACTGATGGGGGTGGCCG
CTTCAAGAATCGCCGTTGATGATGCCAGGCTGGACTTGGCCACAGTGGAA
GGAGAGCGCTTCGGCGTGGTGGTGGGCTCCGCTTTTGGGGGCCTGCAAAC
GCTCGAGACGCAGATTCAGAGCATGAATGAGAAGGGCCCGGGGGCTGTGT
CGCCCTTTGCGGTTCCCATGTTGTTGTCCAACTTGATCTCGGGCGTGATT
GCCTTGGAGAACGGGGCAAAAGGACCGAACTACGTGGTGAATAGCGCGTG
TGCCGCCTCGACCCATGCCCTCGGTCTGGCGTACGCCCATATCGCGCACG
GGGAGGCGGATGTCTGCTTGGCCGGCGGGGCGGAGGCTGCCGTGACACCG
TTCGGGTACGCGGGGTTTTGCTCCATGAAAGCCATGGCGACCAAATACAA
CGACAACCCCTCCCAAGGCTCCCGTCCCTTCGACAAGGATCGGTGCGGCT
TTGTCATGGGCGAGGGTGCCGGTATGCTCGTCCTCGAATCTCTCGAACAC
GCCCAAAAACGCGGCGCGCACATCTATGCCGAAGTCGCCGGCTTTGGTCA
GGCCTGTGACGCCCACCATATCACGACCCCTCACCCCGAGGGGGCGGGTC
TGGCGAAAGCCATCACCTTGGCATTGGATGACGCGGGCTTGGACAAGGGT
GATTTAACGTACATCAACGCCCATGGCACCAGCACGGCGTACAACGACAA
GTTCGAGACGTTGGCGGTCAAGAAGGCCTTGGGGGAGGAGAACGCCAAGA
GGATGTATTTATCGTCGACCAAGGGGTCGACGGGACACACGCTCGGGGCC
GCGGGAGGGTTGGAGGCGATTGCGACAGTACTAGCGATTGAGACGTTGAC
CTTGCCCCCCACCATCAACTATGAGACACCAGACCCGGACTGTGACCTGA
ATGTGGTTCCCAACAAACCCATTAAAGTGGCGGAGATCAAAGCCGCTGCT
TCTCAGTCGGCAGGGTTTGGAGGGCATGACTCGGTTGTAATCTTCAAACC
GTTCAAGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|524724 >mRNA_2230-protein ID=mRNA_2230-protein|Name=jgi.p|Nanoce1779_2|524724|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MKEKTQRVVVTGLGPISAVGIGKDDFWKALLEGKCGIDKISGFDPSGLTC
QIGAEVKGFDAKPYFKDKKSAVRNDRVTLMGVAASRIAVDDARLDLATVE
GERFGVVVGSAFGGLQTLETQIQSMNEKGPGAVSPFAVPMLLSNLISGVI
ALENGAKGPNYVVNSACAASTHALGLAYAHIAHGEADVCLAGGAEAAVTP
FGYAGFCSMKAMATKYNDNPSQGSRPFDKDRCGFVMGEGAGMLVLESLEH
AQKRGAHIYAEVAGFGQACDAHHITTPHPEGAGLAKAITLALDDAGLDKG
DLTYINAHGTSTAYNDKFETLAVKKALGEENAKRMYLSSTKGSTGHTLGA
AGGLEAIATVLAIETLTLPPTINYETPDPDCDLNVVPNKPIKVAEIKAAA
SQSAGFGGHDSVVIFKPFK* back to topmRNA from alignment at scaffold_4:1116941..1119099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2230 ID=mRNA_2230|Name=jgi.p|Nanoce1779_2|524724|organism=Nannochloropsis oceanica|type=mRNA|length=2159bp|location=Sequence derived from alignment at scaffold_4:1116941..1119099- (Nannochloropsis oceanica)
ATGAAGGAGAAGACCCAACGCGTGGTCGTGACAGGCCTAGGGCCCATATC
GGCCGTAGGGATCGGCAAGGACGATTTCTGGAAGGCGTTGCTAGAGGGGA
AGTGCGGCATTGACAAGATCAGTGGCTTTGACCCTAGTGGATTGACGTGC
CAAATTGGTGCGGAAGTGAAGGGTTTTGATGCGAAGCCGTATTTTAAGGA
CAAGGTAGCGAGAGAAGAAGGGAGGGAGGGAAGGAGGGAGGAAGGGAGCG
AGGGAGTGAGGGAGTTAAGGGAGGAGCTGAGCCGATATTCAGACGCTTTC
TCTCAATCCAAAACATCATCTTTGTCTTCGGTTTTCATTTTCCCTTTTAT
CATCATAGAAAAGCGCCGTCCGTAACGACCGTGTGACACTGATGGGGGTG
GCCGCTTCAAGAATCGCCGTTGATGATGCCAGGCTGGACTTGGCCACAGT
GGAAGGAGAGCGCTTCGGCGTGGTGGTGGGCTCCGCTTTTGGGGGCCTGC
AAACGCTCGAGACGCAGATTCAGAGCATGAATGAGAAGGGCCCGGGGGCT
GTGTCGCCCTTTGCGGTTCCCATGTTGTTGTCCAACTTGATCTCGGGCGT
GATTGCCTTGGAGAACGGGGCAAAAGGTACGTTGTCGTCTACCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCAACCTGTCCCTTGA
TTTTACTTCTGTGTAGGGTGTAACGCTTAGGAAGAAAATGATATTGCCTC
TCCTAATCTTTTCTCTCCTTTTGCTGCTAGGACCGAACTACGTGGTGAAT
AGCGCGTGTGCCGCCTCGACCCATGCCCTCGGTCTGGCGTACGCCCATAT
CGCGCACGGGGAGGCGGATGTCTGCTTGGCCGGCGGGGCGGAGGCTGCCG
TGACACCGTTCGGGTACGCGGGGTTTTGCTCCATGAAAGGTAAGCAGGGA
GGGCGGAAGGGAGGGAGGGAGGGAGGGTGCATTTCTCCTGTCCATTCGCG
ATAACATGCATTCAACTCATTCTTACCTTCCCTCTCTCCCTCTCCAGACC
CAAATCACGGCTAGTTGGCTGCTTGATACAATAACAACCTCTCCCAAGAC
TCTCGTCCCTTCCTCTCACTCACTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCCTCCCCCCCTCCCCAGCCATGGCGACCAAATACAACGACAAC
CCCTCCCAAGGCTCCCGTCCCTTCGACAAGGATCGGTGCGGCTTTGTCAT
GGGCGAGGGTGCCGGTATGCTCGTCCTCGAATCTCTCGAACACGCCCAAA
AACGCGGCGCGCACATCTATGCCGAAGTCGCCGGCTTTGGTCAGGCCTGT
GACGCCCACCATATCACGACCCCTCACCCCGAGGGGGCGGGTCTGGCGAA
AGCCATCACCTTGGCATTGGATGACGCGGGCTTGGACAAGGGTGATTTAA
CGTACATCAACGCCCATGGCACCAGCACGGCGTACAACGACAAGTTCGAG
ACGTTGGCGGTCAAGAAGGCCTTGGGGGAGGAGAACGCCAAGAGGATGTA
TTTATCGTCGACCAAGGGGTCGACGGGACACACGCTCGGGGCCGCGGGAG
GGTTGGAGGCGATTGCGACAGTACTAGCGATTGAGACGTTGACCTTGCCC
CCCACCATCAACTATGAGACACCAGACCCGGTATGGAGCCTTCCTTCATT
TCCTTCCCTCCTTCGAGTCTCCCTTGGATGCCCGCAAGACATCCGGAGCC
CCGGCCACGCCTGCCCTGCACGGGCCCGCACTTCCCTCCCGTCCCTCCCT
TCCCCCCACTTCCCCCCCTTCCCTCCCTTCTCTCCACTTTGCTCCCTCTC
TCTCTTCCCTCCCTGCCCTCCCCTCCCTTCCCCCTCTTCCCCACCTTCCC
TCTCTTCCCTCCCTTCCCCCCCTTTCCCTTTTCCCCCTCTCCTTCCTCTC
TATACTCACTTTCTTTTCTCTCCCCCCTCCCCTCCATCTCCTCCGAACGT
CACTTACGCATGTCCTCCTCTACCTCCCTTCTGTAGGACTGTGACCTGAA
TGTGGTTCCCAACAAACCCATTAAAGTGGCGGAGATCAAAGCCGCTGCTT
CTCAGTCGGCAGGGTTTGGAGGGCATGACTCGGTTGTAATCTTCAAACCG
TTCAAGTAA back to topCoding sequence (CDS) from alignment at scaffold_4:1116941..1119099- >mRNA_2230 ID=mRNA_2230|Name=jgi.p|Nanoce1779_2|524724|organism=Nannochloropsis oceanica|type=CDS|length=6300bp|location=Sequence derived from alignment at scaffold_4:1116941..1119099- (Nannochloropsis oceanica)
GACTGTGACCTGAATGTGGTTCCCAACAAACCCATTAAAGTGGCGGAGAT
CAAAGCCGCTGCTTCTCAGTCGGCAGGGTTTGGAGGGCATGACTCGGTTG
TAATCTTCAAACCGTTCAAGTAACCATGGCGACCAAATACAACGACAACC
CCTCCCAAGGCTCCCGTCCCTTCGACAAGGATCGGTGCGGCTTTGTCATG
GGCGAGGGTGCCGGTATGCTCGTCCTCGAATCTCTCGAACACGCCCAAAA
ACGCGGCGCGCACATCTATGCCGAAGTCGCCGGCTTTGGTCAGGCCTGTG
ACGCCCACCATATCACGACCCCTCACCCCGAGGGGGCGGGTCTGGCGAAA
GCCATCACCTTGGCATTGGATGACGCGGGCTTGGACAAGGGTGATTTAAC
GTACATCAACGCCCATGGCACCAGCACGGCGTACAACGACAAGTTCGAGA
CGTTGGCGGTCAAGAAGGCCTTGGGGGAGGAGAACGCCAAGAGGATGTAT
TTATCGTCGACCAAGGGGTCGACGGGACACACGCTCGGGGCCGCGGGAGG
GTTGGAGGCGATTGCGACAGTACTAGCGATTGAGACGTTGACCTTGCCCC
CCACCATCAACTATGAGACACCAGACCCGGACCGAACTACGTGGTGAATA
GCGCGTGTGCCGCCTCGACCCATGCCCTCGGTCTGGCGTACGCCCATATC
GCGCACGGGGAGGCGGATGTCTGCTTGGCCGGCGGGGCGGAGGCTGCCGT
GACACCGTTCGGGTACGCGGGGTTTTGCTCCATGAAAGAAAAGCGCCGTC
CGTAACGACCGTGTGACACTGATGGGGGTGGCCGCTTCAAGAATCGCCGT
TGATGATGCCAGGCTGGACTTGGCCACAGTGGAAGGAGAGCGCTTCGGCG
TGGTGGTGGGCTCCGCTTTTGGGGGCCTGCAAACGCTCGAGACGCAGATT
CAGAGCATGAATGAGAAGGGCCCGGGGGCTGTGTCGCCCTTTGCGGTTCC
CATGTTGTTGTCCAACTTGATCTCGGGCGTGATTGCCTTGGAGAACGGGG
CAAAAGATGAAGGAGAAGACCCAACGCGTGGTCGTGACAGGCCTAGGGCC
CATATCGGCCGTAGGGATCGGCAAGGACGATTTCTGGAAGGCGTTGCTAG
AGGGGAAGTGCGGCATTGACAAGATCAGTGGCTTTGACCCTAGTGGATTG
ACGTGCCAAATTGGTGCGGAAGTGAAGGGTTTTGATGCGAAGCCGTATTT
TAAGGACAAGGACTGTGACCTGAATGTGGTTCCCAACAAACCCATTAAAG
TGGCGGAGATCAAAGCCGCTGCTTCTCAGTCGGCAGGGTTTGGAGGGCAT
GACTCGGTTGTAATCTTCAAACCGTTCAAGTAACCATGGCGACCAAATAC
AACGACAACCCCTCCCAAGGCTCCCGTCCCTTCGACAAGGATCGGTGCGG
CTTTGTCATGGGCGAGGGTGCCGGTATGCTCGTCCTCGAATCTCTCGAAC
ACGCCCAAAAACGCGGCGCGCACATCTATGCCGAAGTCGCCGGCTTTGGT
CAGGCCTGTGACGCCCACCATATCACGACCCCTCACCCCGAGGGGGCGGG
TCTGGCGAAAGCCATCACCTTGGCATTGGATGACGCGGGCTTGGACAAGG
GTGATTTAACGTACATCAACGCCCATGGCACCAGCACGGCGTACAACGAC
AAGTTCGAGACGTTGGCGGTCAAGAAGGCCTTGGGGGAGGAGAACGCCAA
GAGGATGTATTTATCGTCGACCAAGGGGTCGACGGGACACACGCTCGGGG
CCGCGGGAGGGTTGGAGGCGATTGCGACAGTACTAGCGATTGAGACGTTG
ACCTTGCCCCCCACCATCAACTATGAGACACCAGACCCGGACCGAACTAC
GTGGTGAATAGCGCGTGTGCCGCCTCGACCCATGCCCTCGGTCTGGCGTA
CGCCCATATCGCGCACGGGGAGGCGGATGTCTGCTTGGCCGGCGGGGCGG
AGGCTGCCGTGACACCGTTCGGGTACGCGGGGTTTTGCTCCATGAAAGAA
AAGCGCCGTCCGTAACGACCGTGTGACACTGATGGGGGTGGCCGCTTCAA
GAATCGCCGTTGATGATGCCAGGCTGGACTTGGCCACAGTGGAAGGAGAG
CGCTTCGGCGTGGTGGTGGGCTCCGCTTTTGGGGGCCTGCAAACGCTCGA
GACGCAGATTCAGAGCATGAATGAGAAGGGCCCGGGGGCTGTGTCGCCCT
TTGCGGTTCCCATGTTGTTGTCCAACTTGATCTCGGGCGTGATTGCCTTG
GAGAACGGGGCAAAAGATGAAGGAGAAGACCCAACGCGTGGTCGTGACAG
GCCTAGGGCCCATATCGGCCGTAGGGATCGGCAAGGACGATTTCTGGAAG
GCGTTGCTAGAGGGGAAGTGCGGCATTGACAAGATCAGTGGCTTTGACCC
TAGTGGATTGACGTGCCAAATTGGTGCGGAAGTGAAGGGTTTTGATGCGA
AGCCGTATTTTAAGGACAAGGACTGTGACCTGAATGTGGTTCCCAACAAA
CCCATTAAAGTGGCGGAGATCAAAGCCGCTGCTTCTCAGTCGGCAGGGTT
TGGAGGGCATGACTCGGTTGTAATCTTCAAACCGTTCAAGTAACCATGGC
GACCAAATACAACGACAACCCCTCCCAAGGCTCCCGTCCCTTCGACAAGG
ATCGGTGCGGCTTTGTCATGGGCGAGGGTGCCGGTATGCTCGTCCTCGAA
TCTCTCGAACACGCCCAAAAACGCGGCGCGCACATCTATGCCGAAGTCGC
CGGCTTTGGTCAGGCCTGTGACGCCCACCATATCACGACCCCTCACCCCG
AGGGGGCGGGTCTGGCGAAAGCCATCACCTTGGCATTGGATGACGCGGGC
TTGGACAAGGGTGATTTAACGTACATCAACGCCCATGGCACCAGCACGGC
GTACAACGACAAGTTCGAGACGTTGGCGGTCAAGAAGGCCTTGGGGGAGG
AGAACGCCAAGAGGATGTATTTATCGTCGACCAAGGGGTCGACGGGACAC
ACGCTCGGGGCCGCGGGAGGGTTGGAGGCGATTGCGACAGTACTAGCGAT
TGAGACGTTGACCTTGCCCCCCACCATCAACTATGAGACACCAGACCCGG
ACCGAACTACGTGGTGAATAGCGCGTGTGCCGCCTCGACCCATGCCCTCG
GTCTGGCGTACGCCCATATCGCGCACGGGGAGGCGGATGTCTGCTTGGCC
GGCGGGGCGGAGGCTGCCGTGACACCGTTCGGGTACGCGGGGTTTTGCTC
CATGAAAGAAAAGCGCCGTCCGTAACGACCGTGTGACACTGATGGGGGTG
GCCGCTTCAAGAATCGCCGTTGATGATGCCAGGCTGGACTTGGCCACAGT
GGAAGGAGAGCGCTTCGGCGTGGTGGTGGGCTCCGCTTTTGGGGGCCTGC
AAACGCTCGAGACGCAGATTCAGAGCATGAATGAGAAGGGCCCGGGGGCT
GTGTCGCCCTTTGCGGTTCCCATGTTGTTGTCCAACTTGATCTCGGGCGT
GATTGCCTTGGAGAACGGGGCAAAAGATGAAGGAGAAGACCCAACGCGTG
GTCGTGACAGGCCTAGGGCCCATATCGGCCGTAGGGATCGGCAAGGACGA
TTTCTGGAAGGCGTTGCTAGAGGGGAAGTGCGGCATTGACAAGATCAGTG
GCTTTGACCCTAGTGGATTGACGTGCCAAATTGGTGCGGAAGTGAAGGGT
TTTGATGCGAAGCCGTATTTTAAGGACAAGGACTGTGACCTGAATGTGGT
TCCCAACAAACCCATTAAAGTGGCGGAGATCAAAGCCGCTGCTTCTCAGT
CGGCAGGGTTTGGAGGGCATGACTCGGTTGTAATCTTCAAACCGTTCAAG
TAACCATGGCGACCAAATACAACGACAACCCCTCCCAAGGCTCCCGTCCC
TTCGACAAGGATCGGTGCGGCTTTGTCATGGGCGAGGGTGCCGGTATGCT
CGTCCTCGAATCTCTCGAACACGCCCAAAAACGCGGCGCGCACATCTATG
CCGAAGTCGCCGGCTTTGGTCAGGCCTGTGACGCCCACCATATCACGACC
CCTCACCCCGAGGGGGCGGGTCTGGCGAAAGCCATCACCTTGGCATTGGA
TGACGCGGGCTTGGACAAGGGTGATTTAACGTACATCAACGCCCATGGCA
CCAGCACGGCGTACAACGACAAGTTCGAGACGTTGGCGGTCAAGAAGGCC
TTGGGGGAGGAGAACGCCAAGAGGATGTATTTATCGTCGACCAAGGGGTC
GACGGGACACACGCTCGGGGCCGCGGGAGGGTTGGAGGCGATTGCGACAG
TACTAGCGATTGAGACGTTGACCTTGCCCCCCACCATCAACTATGAGACA
CCAGACCCGGACCGAACTACGTGGTGAATAGCGCGTGTGCCGCCTCGACC
CATGCCCTCGGTCTGGCGTACGCCCATATCGCGCACGGGGAGGCGGATGT
CTGCTTGGCCGGCGGGGCGGAGGCTGCCGTGACACCGTTCGGGTACGCGG
GGTTTTGCTCCATGAAAGAAAAGCGCCGTCCGTAACGACCGTGTGACACT
GATGGGGGTGGCCGCTTCAAGAATCGCCGTTGATGATGCCAGGCTGGACT
TGGCCACAGTGGAAGGAGAGCGCTTCGGCGTGGTGGTGGGCTCCGCTTTT
GGGGGCCTGCAAACGCTCGAGACGCAGATTCAGAGCATGAATGAGAAGGG
CCCGGGGGCTGTGTCGCCCTTTGCGGTTCCCATGTTGTTGTCCAACTTGA
TCTCGGGCGTGATTGCCTTGGAGAACGGGGCAAAAGATGAAGGAGAAGAC
CCAACGCGTGGTCGTGACAGGCCTAGGGCCCATATCGGCCGTAGGGATCG
GCAAGGACGATTTCTGGAAGGCGTTGCTAGAGGGGAAGTGCGGCATTGAC
AAGATCAGTGGCTTTGACCCTAGTGGATTGACGTGCCAAATTGGTGCGGA
AGTGAAGGGTTTTGATGCGAAGCCGTATTTTAAGGACAAGGACTGTGACC
TGAATGTGGTTCCCAACAAACCCATTAAAGTGGCGGAGATCAAAGCCGCT
GCTTCTCAGTCGGCAGGGTTTGGAGGGCATGACTCGGTTGTAATCTTCAA
ACCGTTCAAGTAACCATGGCGACCAAATACAACGACAACCCCTCCCAAGG
CTCCCGTCCCTTCGACAAGGATCGGTGCGGCTTTGTCATGGGCGAGGGTG
CCGGTATGCTCGTCCTCGAATCTCTCGAACACGCCCAAAAACGCGGCGCG
CACATCTATGCCGAAGTCGCCGGCTTTGGTCAGGCCTGTGACGCCCACCA
TATCACGACCCCTCACCCCGAGGGGGCGGGTCTGGCGAAAGCCATCACCT
TGGCATTGGATGACGCGGGCTTGGACAAGGGTGATTTAACGTACATCAAC
GCCCATGGCACCAGCACGGCGTACAACGACAAGTTCGAGACGTTGGCGGT
CAAGAAGGCCTTGGGGGAGGAGAACGCCAAGAGGATGTATTTATCGTCGA
CCAAGGGGTCGACGGGACACACGCTCGGGGCCGCGGGAGGGTTGGAGGCG
ATTGCGACAGTACTAGCGATTGAGACGTTGACCTTGCCCCCCACCATCAA
CTATGAGACACCAGACCCGGACCGAACTACGTGGTGAATAGCGCGTGTGC
CGCCTCGACCCATGCCCTCGGTCTGGCGTACGCCCATATCGCGCACGGGG
AGGCGGATGTCTGCTTGGCCGGCGGGGCGGAGGCTGCCGTGACACCGTTC
GGGTACGCGGGGTTTTGCTCCATGAAAGAAAAGCGCCGTCCGTAACGACC
GTGTGACACTGATGGGGGTGGCCGCTTCAAGAATCGCCGTTGATGATGCC
AGGCTGGACTTGGCCACAGTGGAAGGAGAGCGCTTCGGCGTGGTGGTGGG
CTCCGCTTTTGGGGGCCTGCAAACGCTCGAGACGCAGATTCAGAGCATGA
ATGAGAAGGGCCCGGGGGCTGTGTCGCCCTTTGCGGTTCCCATGTTGTTG
TCCAACTTGATCTCGGGCGTGATTGCCTTGGAGAACGGGGCAAAAGATGA
AGGAGAAGACCCAACGCGTGGTCGTGACAGGCCTAGGGCCCATATCGGCC
GTAGGGATCGGCAAGGACGATTTCTGGAAGGCGTTGCTAGAGGGGAAGTG
CGGCATTGACAAGATCAGTGGCTTTGACCCTAGTGGATTGACGTGCCAAA
TTGGTGCGGAAGTGAAGGGTTTTGATGCGAAGCCGTATTTTAAGGACAAG back to top
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