jgi.p|Nanoce1779_2|579545, mRNA_2227 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579545
Unique NamemRNA_2227
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length846
Alignment locationscaffold_4:1103020..1103865 +

Link to JBrowse

Properties
Property NameValue
TranscriptId579631
TrackFilteredModels2
ProteinId579545
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1103020..1103865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579545gene_2227Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579545mRNA_2227-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2227CDS_2227Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2227 ID=mRNA_2227|Name=jgi.p|Nanoce1779_2|579545|organism=Nannochloropsis oceanica|type=mRNA|length=846bp
ACAGGAGCGGACATCATGACCACCACCACTGACACGACCAACAGCACCCT
CGACAAAGGCCTGTCCCTCTACACGGCCCTGGAACCCTTCCTCTACCCCT
CCCTCAATCCCGCCCTCGTTCTTGGCCAGGACATCTCACACCACTGTCCT
TCATTGATGTACGGAGAATTGAGCAGAGAGACCTTACAGAAAGCCCTCGC
CTTGATCGATGAAGACTTGGGGGGGCTGCCACCACGAGGAGAAGGAAGTT
TCATTGACTTAGGGTCAGGCATTGGCGTGCAGGTGTTTGTTGCGGCATGT
ATGTGGGGATGGAAGAGATGTTTGGGTGTGGAGATATATGAGAAGAGAGC
CAAACTGGCGAGAGAGGCACTGAGGAGGTGGGAGAGAGAGGTAGTGGGCG
AGAGAGATCGAGGGGGAGGAGGAGGAGCAGGAAGGGGGGAAGGTGCGAAT
GGTAAAAGTAGCAGTCAAGAACAATCTGACGGCAGAGGTGGCAGCGGGAA
CTGTAGATGTAGTGATATAGACGTTCCTCTTCCTCCCACCCTTGCTGTCG
ATTTTGCATGTGGTGATGTAATTGACCTAGGCGTGGAAGGCTTCCAAGTC
CTCTTGCTTGTCTCTGCTGCATTTACTGACGCTCTGATGAAAACCCTAGC
CATCGCGTTAGATGGGCAGCCGGTGGGGACGTTCGCTATTTGCATCACCA
AAGGTCTGCCTAGTCCAAAGTGGGAGGTGGTGCACAAGGAGGAGAGGGAG
GAGCCGTGGGGACGCGCGTGGTTGATCATTCAGAAGAAAATTGTCGCATA
AATTCTCATTCTTAACATTTTAAAGAACAGACGCAGAAAATTGATG
back to top

protein sequence of jgi.p|Nanoce1779_2|579545

>mRNA_2227-protein ID=mRNA_2227-protein|Name=jgi.p|Nanoce1779_2|579545|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MTTTTDTTNSTLDKGLSLYTALEPFLYPSLNPALVLGQDISHHCPSLMYG
ELSRETLQKALALIDEDLGGLPPRGEGSFIDLGSGIGVQVFVAACMWGWK
RCLGVEIYEKRAKLAREALRRWEREVVGERDRGGGGGAGRGEGANGKSSS
QEQSDGRGGSGNCRCSDIDVPLPPTLAVDFACGDVIDLGVEGFQVLLLVS
AAFTDALMKTLAIALDGQPVGTFAICITKGLPSPKWEVVHKEEREEPWGR
AWLIIQKKIVA*
back to top

mRNA from alignment at scaffold_4:1103020..1103865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2227 ID=mRNA_2227|Name=jgi.p|Nanoce1779_2|579545|organism=Nannochloropsis oceanica|type=mRNA|length=846bp|location=Sequence derived from alignment at scaffold_4:1103020..1103865+ (Nannochloropsis oceanica)
ACAGGAGCGGACATCATGACCACCACCACTGACACGACCAACAGCACCCT
CGACAAAGGCCTGTCCCTCTACACGGCCCTGGAACCCTTCCTCTACCCCT
CCCTCAATCCCGCCCTCGTTCTTGGCCAGGACATCTCACACCACTGTCCT
TCATTGATGTACGGAGAATTGAGCAGAGAGACCTTACAGAAAGCCCTCGC
CTTGATCGATGAAGACTTGGGGGGGCTGCCACCACGAGGAGAAGGAAGTT
TCATTGACTTAGGGTCAGGCATTGGCGTGCAGGTGTTTGTTGCGGCATGT
ATGTGGGGATGGAAGAGATGTTTGGGTGTGGAGATATATGAGAAGAGAGC
CAAACTGGCGAGAGAGGCACTGAGGAGGTGGGAGAGAGAGGTAGTGGGCG
AGAGAGATCGAGGGGGAGGAGGAGGAGCAGGAAGGGGGGAAGGTGCGAAT
GGTAAAAGTAGCAGTCAAGAACAATCTGACGGCAGAGGTGGCAGCGGGAA
CTGTAGATGTAGTGATATAGACGTTCCTCTTCCTCCCACCCTTGCTGTCG
ATTTTGCATGTGGTGATGTAATTGACCTAGGCGTGGAAGGCTTCCAAGTC
CTCTTGCTTGTCTCTGCTGCATTTACTGACGCTCTGATGAAAACCCTAGC
CATCGCGTTAGATGGGCAGCCGGTGGGGACGTTCGCTATTTGCATCACCA
AAGGTCTGCCTAGTCCAAAGTGGGAGGTGGTGCACAAGGAGGAGAGGGAG
GAGCCGTGGGGACGCGCGTGGTTGATCATTCAGAAGAAAATTGTCGCATA
AATTCTCATTCTTAACATTTTAAAGAACAGACGCAGAAAATTGATG
back to top

Coding sequence (CDS) from alignment at scaffold_4:1103020..1103865+

>mRNA_2227 ID=mRNA_2227|Name=jgi.p|Nanoce1779_2|579545|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_4:1103020..1103865+ (Nannochloropsis oceanica)
ATGACCACCACCACTGACACGACCAACAGCACCCTCGACAAAGGCCTGTC
CCTCTACACGGCCCTGGAACCCTTCCTCTACCCCTCCCTCAATCCCGCCC
TCGTTCTTGGCCAGGACATCTCACACCACTGTCCTTCATTGATGTACGGA
GAATTGAGCAGAGAGACCTTACAGAAAGCCCTCGCCTTGATCGATGAAGA
CTTGGGGGGGCTGCCACCACGAGGAGAAGGAAGTTTCATTGACTTAGGGT
CAGGCATTGGCGTGCAGGTGTTTGTTGCGGCATGTATGTGGGGATGGAAG
AGATGTTTGGGTGTGGAGATATATGAGAAGAGAGCCAAACTGGCGAGAGA
GGCACTGAGGAGGTGGGAGAGAGAGGTAGTGGGCGAGAGAGATCGAGGGG
GAGGAGGAGGAGCAGGAAGGGGGGAAGGTGCGAATGGTAAAAGTAGCAGT
CAAGAACAATCTGACGGCAGAGGTGGCAGCGGGAACTGTAGATGTAGTGA
TATAGACGTTCCTCTTCCTCCCACCCTTGCTGTCGATTTTGCATGTGGTG
ATGTAATTGACCTAGGCGTGGAAGGCTTCCAAGTCCTCTTGCTTGTCTCT
GCTGCATTTACTGACGCTCTGATGAAAACCCTAGCCATCGCGTTAGATGG
GCAGCCGGTGGGGACGTTCGCTATTTGCATCACCAAAGGTCTGCCTAGTC
CAAAGTGGGAGGTGGTGCACAAGGAGGAGAGGGAGGAGCCGTGGGGACGC
GCGTGGTTGATCATTCAGAAGAAAATTGTCGCATAA
back to top
Synonyms
Publications