Properties
| Property Name | Value |
|---|
| TranscriptId | 297209 |
| Track | FilteredModels2 |
| ProteinId | 297123 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1097054..1098689 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2225 ID=mRNA_2225|Name=jgi.p|Nanoce1779_2|297123|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
AAGAAGGGTGAGTATTAGTTGCCTTCGCTAAACTTAGCCATTTATTATGT
ATGTGGGACATACCCATTTGTCCTTTTGTTATGTCCCACTTCTCGGTAGG
ACATGCCGACACTCTCTCACTCACCACCCAACACCCTCAACGAACACCTC
CACAAAACAAACACATCAGACGGGGTCGTTTACGAGTGGGTGAAGGGTGT
CATTACAAACGAAGGCCCCGAAGCTATCTGCCAGCTCAACTTCGCTTCCG
TCGACACCGAGCTCGCCAAGATTCCCAATCTCGAGACCCTCCCCGCGGAG
CTGTCCGAGCTTACTTCGTTCAAGCTCGAGCCGAAGCAGAAGATGGATTA
CGCGTTCCTGTTGCCTGTCGATGCCGAGAAAGGTGTCCCCACTATCGGAG
TCATGGACTCCCTCGGTCCCTGCGAGATGATCGAGAAGGCAAAGGCCGCC
CTGGCTGCGGGTGCCTCCGACACCCTGGCTACTGCCACGGGGGTGGCCGA
GGACGCTGCGGCCCTTAGCAAGAAGTCCCTCGAGGAGGCTGCTGCCGCCG
CTGCGGCTGCTAAGGCTGCCGGACAGGGTGCACTCGATGCCACTAAGGCC
GCTGCTGGGGATGCGGCCGATGCTACCAAGGCCGCTGCAGAGGAGGCGGC
CGATGCTACTAAGGCCGCTGCAGAGGAGGCGGCCAATGCTACTAAGACCG
CTGCTGAGGAGGCGGCCGATGCTACCAAGGCAGCTGCTGGGGAGGCGGCT
GATGCGACGGTCAAGGCTGGTGAGGTTGTTCCCGCAGTTGAGACTGAGGC
AGCGGGGGTTGCGGCCGAAACGGCGGTCAAGGCTGAGGGGGAAGTGACTT
CCCCTGCGCCCAAGATGTCGGCGTCTGTGATGGGATTGTTCACCGTGGCT
GTCTTGGTGGCCGTGCAGCTCCTGCTTTAAGCGGCTTTTTCGATTTCATT
TTTTTAATGCATGCCATTCCCATCTCGTAAATGGTTGCGGTGAATGAATA
AGAAAATAATAGGAATGGAATGGACGGAGATGAGATGATGGGAACTGAGT
AGCTTTGGTCGAGGTAGAAAGGCATATACCTTTTTCAAAAATCTTCACGC
TCTTTTTTCGGTGTGCACTATTTGATTATCTGATGTGGTGGATTTTCCAC
TGCTGACCATAAAAAAAAGATGATGACGAGGCAAGGTACCACTCGAAACG
AAAAAAAGCTGTGTACTCTAGAGAGTTAGAATTTGATTAATTAAGAATGG
AGAAAAAAAGGAAGAGAGAAGGAGATGATTGGAAAGAAAGAGGAAGAATA
TATTCAGATAGGAGGTTGGACTGCCAGTAAGGGGCAAGGAGGTGTCATTT
TAAAATTTTGGGGTGACCGCAAAAGCACGGATGGAATAACAATAACAAGA
GGGAGCTGTCATTTGGATGCATAACTTACCAATTACATTATGTCGGGACA
ACACGACACAAGAGTGATAAAGGAGCAAAAGAATAAATTTATGGACACAT
ATAGTAGAAGTGATCGAATTTCTTTCGTTCAGAATATCTATTTCATTTTG
CTATTTTGCTTCTTGTTGACTTCTTTGATTCGAAAAAAGAGGCTACCACA
ACCTCCTGCCTGTTGGCGTCTCCTCCTCATCCCTAA back to topprotein sequence of jgi.p|Nanoce1779_2|297123 >mRNA_2225-protein ID=mRNA_2225-protein|Name=jgi.p|Nanoce1779_2|297123|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MPTLSHSPPNTLNEHLHKTNTSDGVVYEWVKGVITNEGPEAICQLNFASV
DTELAKIPNLETLPAELSELTSFKLEPKQKMDYAFLLPVDAEKGVPTIGV
MDSLGPCEMIEKAKAALAAGASDTLATATGVAEDAAALSKKSLEEAAAAA
AAAKAAGQGALDATKAAAGDAADATKAAAEEAADATKAAAEEAANATKTA
AEEAADATKAAAGEAADATVKAGEVVPAVETEAAGVAAETAVKAEGEVTS
PAPKMSASVMGLFTVAVLVAVQLLL* back to topmRNA from alignment at scaffold_4:1097054..1098689- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2225 ID=mRNA_2225|Name=jgi.p|Nanoce1779_2|297123|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp|location=Sequence derived from alignment at scaffold_4:1097054..1098689- (Nannochloropsis oceanica)
AAGAAGGGTGAGTATTAGTTGCCTTCGCTAAACTTAGCCATTTATTATGT
ATGTGGGACATACCCATTTGTCCTTTTGTTATGTCCCACTTCTCGGTAGG
ACATGCCGACACTCTCTCACTCACCACCCAACACCCTCAACGAACACCTC
CACAAAACAAACACATCAGACGGGGTCGTTTACGAGTGGGTGAAGGGTGT
CATTACAAACGAAGGCCCCGAAGCTATCTGCCAGCTCAACTTCGCTTCCG
TCGACACCGAGCTCGCCAAGATTCCCAATCTCGAGACCCTCCCCGCGGAG
CTGTCCGAGCTTACTTCGTTCAAGCTCGAGCCGAAGCAGAAGATGGATTA
CGCGTTCCTGTTGCCTGTCGATGCCGAGAAAGGTGTCCCCACTATCGGAG
TCATGGACTCCCTCGGTCCCTGCGAGATGATCGAGAAGGCAAAGGCCGCC
CTGGCTGCGGGTGCCTCCGACACCCTGGCTACTGCCACGGGGGTGGCCGA
GGACGCTGCGGCCCTTAGCAAGAAGTCCCTCGAGGAGGCTGCTGCCGCCG
CTGCGGCTGCTAAGGCTGCCGGACAGGGTGCACTCGATGCCACTAAGGCC
GCTGCTGGGGATGCGGCCGATGCTACCAAGGCCGCTGCAGAGGAGGCGGC
CGATGCTACTAAGGCCGCTGCAGAGGAGGCGGCCAATGCTACTAAGACCG
CTGCTGAGGAGGCGGCCGATGCTACCAAGGCAGCTGCTGGGGAGGCGGCT
GATGCGACGGTCAAGGCTGGTGAGGTTGTTCCCGCAGTTGAGACTGAGGC
AGCGGGGGTTGCGGCCGAAACGGCGGTCAAGGCTGAGGGGGAAGTGACTT
CCCCTGCGCCCAAGATGTCGGCGTCTGTGATGGGATTGTTCACCGTGGCT
GTCTTGGTGGCCGTGCAGCTCCTGCTTTAAGCGGCTTTTTCGATTTCATT
TTTTTAATGCATGCCATTCCCATCTCGTAAATGGTTGCGGTGAATGAATA
AGAAAATAATAGGAATGGAATGGACGGAGATGAGATGATGGGAACTGAGT
AGCTTTGGTCGAGGTAGAAAGGCATATACCTTTTTCAAAAATCTTCACGC
TCTTTTTTCGGTGTGCACTATTTGATTATCTGATGTGGTGGATTTTCCAC
TGCTGACCATAAAAAAAAGATGATGACGAGGCAAGGTACCACTCGAAACG
AAAAAAAGCTGTGTACTCTAGAGAGTTAGAATTTGATTAATTAAGAATGG
AGAAAAAAAGGAAGAGAGAAGGAGATGATTGGAAAGAAAGAGGAAGAATA
TATTCAGATAGGAGGTTGGACTGCCAGTAAGGGGCAAGGAGGTGTCATTT
TAAAATTTTGGGGTGACCGCAAAAGCACGGATGGAATAACAATAACAAGA
GGGAGCTGTCATTTGGATGCATAACTTACCAATTACATTATGTCGGGACA
ACACGACACAAGAGTGATAAAGGAGCAAAAGAATAAATTTATGGACACAT
ATAGTAGAAGTGATCGAATTTCTTTCGTTCAGAATATCTATTTCATTTTG
CTATTTTGCTTCTTGTTGACTTCTTTGATTCGAAAAAAGAGGCTACCACA
ACCTCCTGCCTGTTGGCGTCTCCTCCTCATCCCTAA back to topCoding sequence (CDS) from alignment at scaffold_4:1097054..1098689- >mRNA_2225 ID=mRNA_2225|Name=jgi.p|Nanoce1779_2|297123|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_4:1097054..1098689- (Nannochloropsis oceanica)
ATGCCGACACTCTCTCACTCACCACCCAACACCCTCAACGAACACCTCCA
CAAAACAAACACATCAGACGGGGTCGTTTACGAGTGGGTGAAGGGTGTCA
TTACAAACGAAGGCCCCGAAGCTATCTGCCAGCTCAACTTCGCTTCCGTC
GACACCGAGCTCGCCAAGATTCCCAATCTCGAGACCCTCCCCGCGGAGCT
GTCCGAGCTTACTTCGTTCAAGCTCGAGCCGAAGCAGAAGATGGATTACG
CGTTCCTGTTGCCTGTCGATGCCGAGAAAGGTGTCCCCACTATCGGAGTC
ATGGACTCCCTCGGTCCCTGCGAGATGATCGAGAAGGCAAAGGCCGCCCT
GGCTGCGGGTGCCTCCGACACCCTGGCTACTGCCACGGGGGTGGCCGAGG
ACGCTGCGGCCCTTAGCAAGAAGTCCCTCGAGGAGGCTGCTGCCGCCGCT
GCGGCTGCTAAGGCTGCCGGACAGGGTGCACTCGATGCCACTAAGGCCGC
TGCTGGGGATGCGGCCGATGCTACCAAGGCCGCTGCAGAGGAGGCGGCCG
ATGCTACTAAGGCCGCTGCAGAGGAGGCGGCCAATGCTACTAAGACCGCT
GCTGAGGAGGCGGCCGATGCTACCAAGGCAGCTGCTGGGGAGGCGGCTGA
TGCGACGGTCAAGGCTGGTGAGGTTGTTCCCGCAGTTGAGACTGAGGCAG
CGGGGGTTGCGGCCGAAACGGCGGTCAAGGCTGAGGGGGAAGTGACTTCC
CCTGCGCCCAAGATGTCGGCGTCTGTGATGGGATTGTTCACCGTGGCTGT
CTTGGTGGCCGTGCAGCTCCTGCTTTAA back to top
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