jgi.p|Nanoce1779_2|297054, mRNA_2223 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|297054
Unique NamemRNA_2223
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1490
Alignment locationscaffold_4:1092661..1094763 -

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Properties
Property NameValue
TranscriptId297140
TrackFilteredModels2
ProteinId297054
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1092661..1094763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|297054gene_2223Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|297054mRNA_2223-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2223CDS_2223Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2223 ID=mRNA_2223|Name=jgi.p|Nanoce1779_2|297054|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp
GAGTGTGTTTGATCTTCATTTGCGGCGGCAAGAGCCAAAGGATGGAAGCA
GGAGGAGGAGGGGGAAGAGGAGGAAGAGGAAATGCCTAGAAGCATGGCAG
ACATCTATAAGATCTCGAACAGGAACCGAAAGAGGAACAAGGAGAAGAAG
AAGCAGCTGGATGGAGCCGGCAACAGCGACAGCACCACGGGGGTTGACGA
GGGGTTGAGCGCAGACAACTCAACCACACCAGCAGCAGCAGCAGCAGTCG
CAGCAGCAGCAGCAACAACAGCAACAGCGCCTCTCCCACCTTTCGACCCT
GAGCTCGAGGGATATTTTGGAGGTTCCGCGGCGGTGACAGGAGTGATGGC
CCCCTCCTTCACGAGCCACGGGGGCAACAGCGCGGCGGTGTTAGCCAATA
AAAAAACGAGGAAGCATGATGCAGAAGACACCTTGAAGTTCATGAGTAGC
ATCGGTTGGGTTAATCCAGCGGCTTCGGCCATCCCTCCCCCGATCCCTCC
CCCGCCTATCCCTTCCCACCCACATAATCAGCAGCAGCAACCGCAACAGC
AACAGCAGCAGCAGCATGGGCTGACCGTTGAGGAAATTCAGCAGATTCAG
TCATCAGGGATGGGAGGAGTGAGGGGAGGAGGAGGAGGAGGAGGAGAAGG
AAACCATCCAGACACTGCCTTTATTCGGCAGCAGCAGCTGTGGCTTCAGC
AGCAGCAGCAGCAGCAGCAAGAGGCAGGTCGTGGCGTAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGAAGACGATGACGGGCGGTTCCGCTGG
TGCGGGTGGAGGGCTGGGACGTGGTGACGGCTTTCTCTCCGCCCTGCCCG
CCCACCAATACGAGCCTGGCGCTGGAGGCGTCCTTCCACAGGGAGCCCAT
CCCCCTCCCTCCCTCCCCCCTTCCTTGTACAGCAACCCTTACCTCCAGCA
ACCACCACCACAGCAGCAGCAGACAGGGATGAATTATAGCGCCATCTCTC
CCTCCGTCGTTTCTGCCATGGGGATGAGTGCTTATGTGCAAGGTAGCGCA
GGAGTGCCAGGAGGAGGACAGGGAGGAGGGAGGGAAGGAGGGAAGGAGGG
AAGGAAGGTCAATCCATATATGATGGCCGTGCCACCTGGACGGCAGCAAC
AGCAGCAGGAGTTGTTGTTGCAGCAGACATTTCAGCAACAGCAGCAGCAG
TGGCGACTACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
GCAACAACAACAGCCTTTCTGATAGGTGGGATAAGAAGATTCTCATTGTT
TGTATGACTTCCGGCGCGAAGAGGGAATGAGTGCACCTGGAGGACGGAGA
CGAAGGGAAGAGAGTAAATAGGAGAGATGGCCAGGAAGAAAAGAAGGAAA
AGCAAGAGCTTTTAACTATTTACAGCCACAAGTTAAAGTGATAGCAATGA
TGAGATACAGGGGGAGGAGGTGGCCTCGCTGCTCAGTGAT
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protein sequence of jgi.p|Nanoce1779_2|297054

>mRNA_2223-protein ID=mRNA_2223-protein|Name=jgi.p|Nanoce1779_2|297054|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MPRSMADIYKISNRNRKRNKEKKKQLDGAGNSDSTTGVDEGLSADNSTTP
AAAAAVAAAAATTATAPLPPFDPELEGYFGGSAAVTGVMAPSFTSHGGNS
AAVLANKKTRKHDAEDTLKFMSSIGWVNPAASAIPPPIPPPPIPSHPHNQ
QQQPQQQQQQQHGLTVEEIQQIQSSGMGGVRGGGGGGGEGNHPDTAFIRQ
QQLWLQQQQQQQQEAGRGVGGGGGGGGGGGGKTMTGGSAGAGGGLGRGDG
FLSALPAHQYEPGAGGVLPQGAHPPPSLPPSLYSNPYLQQPPPQQQQTGM
NYSAISPSVVSAMGMSAYVQGSAGVPGGGQGGGREGGKEGRKVNPYMMAV
PPGRQQQQQELLLQQTFQQQQQQWRLQQQQQQQQQQQQQQQQQQPF*
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mRNA from alignment at scaffold_4:1092661..1094763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2223 ID=mRNA_2223|Name=jgi.p|Nanoce1779_2|297054|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at scaffold_4:1092661..1094763- (Nannochloropsis oceanica)
GAGTGTGTTTGATCTTCATTTGCGGCGGCAAGAGCCAAAGGATGCCTCCC
TCCCCTCCTCCCTCCCTTCCTCCTTCCCTCCCGTCCTCCCCACGGAGGAG
TTGTACCTGACAGCAGGATGGACCTCGCCTTTGATCCCTTCCTCCCTCGA
CACGATACCATCGCTTGCTGTTCCCCCCACCGTCATTTCTACCACCGCCA
ACACTACAGCAATCATTGACCCTTCCCGGCAGGGAGGGAGGGGGGGAGGG
ATGGCCGTAGTGCCGGCCCAGGGTAACGCAGGGATGGAGACATATCGCTC
ATTTTCTCATTCCTTGGAATTATCCTCCTCCCCAACCACACGTGCGACTG
AAAATAAAGCAGCCGTGATGATGATGATGTCGTCTGTGGAGAAGAAAGGA
GGGAGGGAAGAAGGAAGGGAGCGAGAGGGGGCGTTTGGGGACCAGTTGAA
AGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGGAGGCGGAG
AATGGGATAGTACGCATCTGCAATACGCAGCTGGTGTGGACCCCCTGGCA
GCAGCGAGGGTGCTGCTGCGAAAGGAGCAGGGTCTGCCGGCGATAAATGA
TGCCACGGTGGAGTTTGACGAGGAGGAGGAGGCGGCGGAGGAGGAAGGGG
AAGGAGGGAAGCAGGAGGAGGAGGGGGAAGAGGAGGAAGAGGAAATGCCT
AGAAGCATGGCAGACATCTATAAGATCTCGAACAGGAACCGAAAGAGGAA
CAAGGAGAAGAAGAAGCAGCTGGATGGAGCCGGCAACAGCGACAGCACCA
CGGGGGTTGACGAGGGGTTGAGCGCAGACAACTCAACCACACCAGCAGCA
GCAGCAGCAGTCGCAGCAGCAGCAGCAACAACAGCAACAGCGCCTCTCCC
ACCTTTCGACCCTGAGCTCGAGGGATATTTTGGAGGTTCCGCGGCGGTGA
CAGGAGTGATGGCCCCCTCCTTCACGAGCCACGGGGGCAACAGCGCGGCG
GTGTTAGCCAATAAAAAAACGAGGAAGCATGATGCAGAAGACACCTTGAA
GTTCATGAGTAGCATCGGTTGGGTTAATCCAGCGGCTTCGGCCATCCCTC
CCCCGATCCCTCCCCCGCCTATCCCTTCCCACCCACATAATCAGCAGCAG
CAACCGCAACAGCAACAGCAGCAGCAGCATGGGCTGACCGTTGAGGAAAT
TCAGCAGATTCAGTCATCAGGGATGGGAGGAGTGAGGGGAGGAGGAGGAG
GAGGAGGAGAAGGAAACCATCCAGACACTGCCTTTATTCGGCAGCAGCAG
CTGTGGCTTCAGCAGCAGCAGCAGCAGCAGCAAGAGGCAGGTCGTGGCGT
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGACGATGACGG
GCGGTTCCGCTGGTGCGGGTGGAGGGCTGGGACGTGGTGACGGCTTTCTC
TCCGCCCTGCCCGCCCACCAATACGAGCCTGGCGCTGGAGGCGTCCTTCC
ACAGGGAGCCCATCCCCCTCCCTCCCTCCCCCCTTCCTTGTACAGCAACC
CTTACCTCCAGCAACCACCACCACAGCAGCAGCAGACAGGGATGAATTAT
AGCGCCATCTCTCCCTCCGTCGTTTCTGCCATGGGGATGAGTGCTTATGT
GCAAGGTAGCGCAGGAGTGCCAGGAGGAGGACAGGGAGGAGGGAGGGAAG
GAGGGAAGGAGGGAAGGAAGGTCAATCCATATATGATGGCCGTGCCACCT
GGACGGCAGCAACAGCAGCAGGAGTTGTTGTTGCAGCAGACATTTCAGCA
ACAGCAGCAGCAGTGGCGACTACAACAACAGCAGCAGCAGCAGCAGCAGC
AGCAACAGCAACAGCAACAACAACAGCCTTTCTGATAGGTGGGATAAGAA
GATTCTCATTGTTTGTATGACTTCCGGCGCGAAGAGGGAATGAGTGCACC
TGGAGGACGGAGACGAAGGGAAGAGAGTAAATAGGAGAGATGGCCAGGAA
GAAAAGAAGGAAAAGCAAGAGCTTTTAACTATTTACAGCCACAAGTTAAA
GTGATAGCAATGATGAGATACAGGGGGAGGAGGTGGCCTCGCTGCTCAGT
GAT
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Coding sequence (CDS) from alignment at scaffold_4:1092661..1094763-

>mRNA_2223 ID=mRNA_2223|Name=jgi.p|Nanoce1779_2|297054|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_4:1092661..1094763- (Nannochloropsis oceanica)
ATGCCTAGAAGCATGGCAGACATCTATAAGATCTCGAACAGGAACCGAAA
GAGGAACAAGGAGAAGAAGAAGCAGCTGGATGGAGCCGGCAACAGCGACA
GCACCACGGGGGTTGACGAGGGGTTGAGCGCAGACAACTCAACCACACCA
GCAGCAGCAGCAGCAGTCGCAGCAGCAGCAGCAACAACAGCAACAGCGCC
TCTCCCACCTTTCGACCCTGAGCTCGAGGGATATTTTGGAGGTTCCGCGG
CGGTGACAGGAGTGATGGCCCCCTCCTTCACGAGCCACGGGGGCAACAGC
GCGGCGGTGTTAGCCAATAAAAAAACGAGGAAGCATGATGCAGAAGACAC
CTTGAAGTTCATGAGTAGCATCGGTTGGGTTAATCCAGCGGCTTCGGCCA
TCCCTCCCCCGATCCCTCCCCCGCCTATCCCTTCCCACCCACATAATCAG
CAGCAGCAACCGCAACAGCAACAGCAGCAGCAGCATGGGCTGACCGTTGA
GGAAATTCAGCAGATTCAGTCATCAGGGATGGGAGGAGTGAGGGGAGGAG
GAGGAGGAGGAGGAGAAGGAAACCATCCAGACACTGCCTTTATTCGGCAG
CAGCAGCTGTGGCTTCAGCAGCAGCAGCAGCAGCAGCAAGAGGCAGGTCG
TGGCGTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGACGA
TGACGGGCGGTTCCGCTGGTGCGGGTGGAGGGCTGGGACGTGGTGACGGC
TTTCTCTCCGCCCTGCCCGCCCACCAATACGAGCCTGGCGCTGGAGGCGT
CCTTCCACAGGGAGCCCATCCCCCTCCCTCCCTCCCCCCTTCCTTGTACA
GCAACCCTTACCTCCAGCAACCACCACCACAGCAGCAGCAGACAGGGATG
AATTATAGCGCCATCTCTCCCTCCGTCGTTTCTGCCATGGGGATGAGTGC
TTATGTGCAAGGTAGCGCAGGAGTGCCAGGAGGAGGACAGGGAGGAGGGA
GGGAAGGAGGGAAGGAGGGAAGGAAGGTCAATCCATATATGATGGCCGTG
CCACCTGGACGGCAGCAACAGCAGCAGGAGTTGTTGTTGCAGCAGACATT
TCAGCAACAGCAGCAGCAGTGGCGACTACAACAACAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAACAGCAACAACAACAGCCTTTCTGA
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Synonyms
Publications