jgi.p|Nanoce1779_2|579522, mRNA_2220 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579522
Unique Name	mRNA_2220
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1024
Alignment location	scaffold_4:1085692..1086715 +

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Properties


Property Name	Value
TranscriptId	579608
Track	FilteredModels2
ProteinId	579522

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1085692..1086715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579522	gene_2220	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579522	mRNA_2220-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2220	CDS_2220	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1085692..1086715+
coding sequence from alignment at scaffold_4:1085692..1086715+

mRNA sequence

>mRNA_2220 ID=mRNA_2220|Name=jgi.p|Nanoce1779_2|579522|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGGGTATAGCGGTGGCCCTG
GTGCAGGAGGGGGGGACCTTTTCCCGTCATCCTCCTCCCTCTGTTTCGCA
TGGGACAAGCGCCGCCGTTGGTAGTCACTAGGGAAGGGAGAGAGGGAGCA
AGGGAGGGATAGACAGAAGTGAAACAATACAATAGTGTGCAAAAGCAGCA
ACAAGAACCAATAAAAGGAGCAGCAGTAGAAGCAGTAGCAGTAGTAGTAG
CAGCAGCAGCACTAAGAGCAGTAGTAATATAATTCAGATCAGATATGTCA
AACTTATACGTTTAGGGGGGGGGGGAAAGGAGGGAGGACGACCGGTCGAG
CAAGGATAGCGTTCCGTTGGCACAGCGAGGAAGATGCGCACAACGCAGCG
GATCTTCCAGAGCAATAAGAGTGACGGTATAAAAAAAAGGAGAGAAGGAA
GGAGGTAAGGTGGGGGCGAGTCTCTTTGTTGTTGGAATCACCCAAGGAGT
ACACCGCCATTTACAACACAAGAATAAAAAGAATGACAAGAAAGACACTC
ATTTCACATGGCCTTGTATTCCTCTTCACTGTTTCCTCCCCCATTTTTAC
CAGTGAATTCTTTTCGTTCCTCCTCTGTCTTCTTTCCTATTTCTTTCTTT
CATTCTGCCTCTTCTTCCTCTCCTTCCTCACTTCTTCAACTGCATCGTCT
CCTTCTCCCTCCCTAACCCTAACCTCTCCTCTGCTTCTCCACTTCTCTGC
TTGTTCTTCCTGCATCTCTTCGACCTCCTCTTCTTCTAAATGTGTTTTAC
CGTCTTTTCTTCCCGGCAACCATCCTCTCCCATAATTGCTCGTGCACCGG
CACGCTCAATCTATCTCAGGAATGTCTCGCCAATCGCTTAAATTTATCTG
CACAACGCCTGTCTTTCTCTTCTTCTCCTTGTCTTTCTCCTCAATGCTCT
TTATGCAATTCCCAGTGTCACATTCCGCCTCTGCGGCCCTTCCCCCCTTC
CTCCCCCCATCCCTCCCCCCGCTC

protein sequence of jgi.p|Nanoce1779_2|579522

>mRNA_2220-protein ID=mRNA_2220-protein|Name=jgi.p|Nanoce1779_2|579522|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MTRKTLISHGLVFLFTVSSPIFTSEFFSFLLCLLSYFFLSFCLFFLSFLT
SSTASSPSPSLTLTSPLLLHFSACSSCISSTSSSSKCVLPSFLPGNHPLP
*

mRNA from alignment at scaffold_4:1085692..1086715+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2220 ID=mRNA_2220|Name=jgi.p|Nanoce1779_2|579522|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp|location=Sequence derived from alignment at scaffold_4:1085692..1086715+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGGGTATAGCGGTGGCCCTG
GTGCAGGAGGGGGGGACCTTTTCCCGTCATCCTCCTCCCTCTGTTTCGCA
TGGGACAAGCGCCGCCGTTGGTAGTCACTAGGGAAGGGAGAGAGGGAGCA
AGGGAGGGATAGACAGAAGTGAAACAATACAATAGTGTGCAAAAGCAGCA
ACAAGAACCAATAAAAGGAGCAGCAGTAGAAGCAGTAGCAGTAGTAGTAG
CAGCAGCAGCACTAAGAGCAGTAGTAATATAATTCAGATCAGATATGTCA
AACTTATACGTTTAGGGGGGGGGGGAAAGGAGGGAGGACGACCGGTCGAG
CAAGGATAGCGTTCCGTTGGCACAGCGAGGAAGATGCGCACAACGCAGCG
GATCTTCCAGAGCAATAAGAGTGACGGTATAAAAAAAAGGAGAGAAGGAA
GGAGGTAAGGTGGGGGCGAGTCTCTTTGTTGTTGGAATCACCCAAGGAGT
ACACCGCCATTTACAACACAAGAATAAAAAGAATGACAAGAAAGACACTC
ATTTCACATGGCCTTGTATTCCTCTTCACTGTTTCCTCCCCCATTTTTAC
CAGTGAATTCTTTTCGTTCCTCCTCTGTCTTCTTTCCTATTTCTTTCTTT
CATTCTGCCTCTTCTTCCTCTCCTTCCTCACTTCTTCAACTGCATCGTCT
CCTTCTCCCTCCCTAACCCTAACCTCTCCTCTGCTTCTCCACTTCTCTGC
TTGTTCTTCCTGCATCTCTTCGACCTCCTCTTCTTCTAAATGTGTTTTAC
CGTCTTTTCTTCCCGGCAACCATCCTCTCCCATAATTGCTCGTGCACCGG
CACGCTCAATCTATCTCAGGAATGTCTCGCCAATCGCTTAAATTTATCTG
CACAACGCCTGTCTTTCTCTTCTTCTCCTTGTCTTTCTCCTCAATGCTCT
TTATGCAATTCCCAGTGTCACATTCCGCCTCTGCGGCCCTTCCCCCCTTC
CTCCCCCCATCCCTCCCCCCGCTC

Coding sequence (CDS) from alignment at scaffold_4:1085692..1086715+

>mRNA_2220 ID=mRNA_2220|Name=jgi.p|Nanoce1779_2|579522|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_4:1085692..1086715+ (Nannochloropsis oceanica)
ATGACAAGAAAGACACTCATTTCACATGGCCTTGTATTCCTCTTCACTGT
TTCCTCCCCCATTTTTACCAGTGAATTCTTTTCGTTCCTCCTCTGTCTTC
TTTCCTATTTCTTTCTTTCATTCTGCCTCTTCTTCCTCTCCTTCCTCACT
TCTTCAACTGCATCGTCTCCTTCTCCCTCCCTAACCCTAACCTCTCCTCT
GCTTCTCCACTTCTCTGCTTGTTCTTCCTGCATCTCTTCGACCTCCTCTT
CTTCTAAATGTGTTTTACCGTCTTTTCTTCCCGGCAACCATCCTCTCCCA
TAA

Synonyms

Publications