jgi.p|Nanoce1779_2|576592, mRNA_222 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576592
Unique NamemRNA_222
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length660
Alignment locationscaffold_3:556391..557050 -

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Properties
Property NameValue
TranscriptId576678
TrackFilteredModels2
ProteinId576592
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:556391..557050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576592gene_222Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576592mRNA_222-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_222CDS_222Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_222 ID=mRNA_222|Name=jgi.p|Nanoce1779_2|576592|organism=Nannochloropsis oceanica|type=mRNA|length=660bp
CAGGGCCAAGAGATGAAGGGTTGGGACATGATGCACCGCGGCGTCCTGCT
GGGCATGGGCTCATTGACGGCCATCGCAACGTACCGCAGCTGGTGCGAAT
ACCAGAGGCGAATCGTTATTAATGAGCAAAAGGAGGCAGCCAGAAAAAAA
GTCCGGGCTGCTCAGCGCGCTGCTGCGCAGGCCGCGGCTGAGGCACAGGA
GGAAGTCAGGAGTCTGAGAAAAAAACAAGCTGCACGGAGGCATCTCAGCG
GTGGAGGTGGTATAGAAGAATTGGGGGCAGGTAGTGAGTAAGGAATGGAG
GATGTGACTTTTCAAGACTGAGGAGAGGATTTTTTAGTTGGTCGATTGAA
ATGCCTGATGGTGTGTGGGAGTAGAAGACGTTTTGGTCAGAGGGAAGGAC
GGAGAAAGAAAGGAAAATGGAGAGGGTTAAGATGGGAAAGATGGGGCTGC
GTGGTTGCCGTCATGAAGGAACAAAACCAAGGGCTGTTGAGGAAAGCACA
TAGACATACAGACAAATTTGTCAACAGACGTACACACTCCTATATCAAGA
AGGAAAAATACAAACATGTATGAAATGTTGCCTGAGGAAGAAAAGTCAAA
ATATACATACGAATCTGAGGAGCGAAAAGAAGTAGGCAGCACCAGAAAGC
TTGTTGCCAG
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protein sequence of jgi.p|Nanoce1779_2|576592

>mRNA_222-protein ID=mRNA_222-protein|Name=jgi.p|Nanoce1779_2|576592|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MKGWDMMHRGVLLGMGSLTAIATYRSWCEYQRRIVINEQKEAARKKVRAA
QRAAAQAAAEAQEEVRSLRKKQAARRHLSGGGGIEELGAGS
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mRNA from alignment at scaffold_3:556391..557050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_222 ID=mRNA_222|Name=jgi.p|Nanoce1779_2|576592|organism=Nannochloropsis oceanica|type=mRNA|length=660bp|location=Sequence derived from alignment at scaffold_3:556391..557050- (Nannochloropsis oceanica)
CAGGGCCAAGAGATGAAGGGTTGGGACATGATGCACCGCGGCGTCCTGCT
GGGCATGGGCTCATTGACGGCCATCGCAACGTACCGCAGCTGGTGCGAAT
ACCAGAGGCGAATCGTTATTAATGAGCAAAAGGAGGCAGCCAGAAAAAAA
GTCCGGGCTGCTCAGCGCGCTGCTGCGCAGGCCGCGGCTGAGGCACAGGA
GGAAGTCAGGAGTCTGAGAAAAAAACAAGCTGCACGGAGGCATCTCAGCG
GTGGAGGTGGTATAGAAGAATTGGGGGCAGGTAGTGAGTAAGGAATGGAG
GATGTGACTTTTCAAGACTGAGGAGAGGATTTTTTAGTTGGTCGATTGAA
ATGCCTGATGGTGTGTGGGAGTAGAAGACGTTTTGGTCAGAGGGAAGGAC
GGAGAAAGAAAGGAAAATGGAGAGGGTTAAGATGGGAAAGATGGGGCTGC
GTGGTTGCCGTCATGAAGGAACAAAACCAAGGGCTGTTGAGGAAAGCACA
TAGACATACAGACAAATTTGTCAACAGACGTACACACTCCTATATCAAGA
AGGAAAAATACAAACATGTATGAAATGTTGCCTGAGGAAGAAAAGTCAAA
ATATACATACGAATCTGAGGAGCGAAAAGAAGTAGGCAGCACCAGAAAGC
TTGTTGCCAG
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Coding sequence (CDS) from alignment at scaffold_3:556391..557050-

>mRNA_222 ID=mRNA_222|Name=jgi.p|Nanoce1779_2|576592|organism=Nannochloropsis oceanica|type=CDS|length=275bp|location=Sequence derived from alignment at scaffold_3:556391..557050- (Nannochloropsis oceanica)
ATGAAGGGTTGGGACATGATGCACCGCGGCGTCCTGCTGGGCATGGGCTC
ATTGACGGCCATCGCAACGTACCGCAGCTGGTGCGAATACCAGAGGCGAA
TCGTTATTAATGAGCAAAAGGAGGCAGCCAGAAAAAAAGTCCGGGCTGCT
CAGCGCGCTGCTGCGCAGGCCGCGGCTGAGGCACAGGAGGAAGTCAGGAG
TCTGAGAAAAAAACAAGCTGCACGGAGGCATCTCAGCGGTGGAGGTGGTA
TAGAAGAATTGGGGGCAGGTAGTGA
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Synonyms
Publications