jgi.p|Nanoce1779_2|579505, mRNA_2217 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579505
Unique NamemRNA_2217
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1629
Alignment locationscaffold_4:1075698..1077616 -

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Properties
Property NameValue
TranscriptId579591
TrackFilteredModels2
ProteinId579505
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1075698..1077616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579505gene_2217Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579505mRNA_2217-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2217CDS_2217Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2217 ID=mRNA_2217|Name=jgi.p|Nanoce1779_2|579505|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp
ACAGAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCT
TATCTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTG
GGTCGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTT
GTCTTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAG
CCACATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGC
TTGGCTCATCCACGAGCCCATTAAGTGCAACGAAATCCCAGTAATTCCCC
TTTCTACCTCACATCACACCACTCAAACAGCCTTCATGATGGACCCTGAA
GTCGAAGAGGCCCTTGGAAATGAAACTGATCCCCCCTCTTATACCGAAAC
TGACCGTAAACACATGCGTCGCGCCCTCCGACTTGCCTCTTACGCGCTTG
GCAAGACCCGCCCCAACCCCGTGGTCGGATGCGTCATCATCGACCAAAAC
GGAAAATTAGTCGGAGAGGGCTTCCATCCTAAGGCCGGAGAGCCTCATGC
AGAAGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAGCAAGGGGAGGGACGG
CATACGTGACGCTGGAGCCATGTAATCACACGGGGAAGACTCCTCCCTGT
GTGGATGCCCTCCTTGCGGCAGGTGTCAAAAAAGTAGTAGCGGGCATGGT
CGACCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGGCAAGGCTGGAAGAGG
GGGGTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAGAAGTGTCAGGAGTTG
AACCGGCCGTTTGTTCACAGGGTAATGCATGGGACACCGTTGGGGTTTTT
GCCGTTGACCTACCGGGGGCATAGCTTCGTCAGACCCTCCCCTGATACGG
TCCAACTGGGGGATGGGGGAAAGGCGCTACAAATGATTGATGCTGTAGTG
GTGGACTTCAATGTGAAGGGTGAGGGGTTGCAGACTGTTACTACGCTTGA
AAAGGCGGGTCTGCTGCAGGATGAGGTCGTGAGGGTGGTGTTGGCAAATG
ACTTAGCCGGGCTACCGAGCGAGTGGGCCAAAAACAAAAAAAAGACGGTG
AGGAAAATTGTCCTGACTTCAAACATCGAGGCGCAACGAGCTGCTGTGGT
AGGGTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAATGCCGACAGATCCCT
TGGCTGTGGGCAAGTACTTGCATGACTTAGATTTGTTGTCGGCATTATGG
CTGTTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAAGGCGGGAGTGGTGCA
GGATTTGTGGATCCATGTGACGTTGCAGGAGGCGGACGAGCTTGATGGGG
TGGATGATCCCGATTTCTTGGGGAGGCAGTTTGGGAGGCCGATGAAGGTA
GCGGTGATGAGTTGTGATGCGATTGGGACAAAGGCGTGCTTGTTGAGTTT
GACAGTGGATGATGAGGCGACGCTTTGAGGGAGGGAGTGTGAGAAGGCAT
GTGCGTGAGATAATTGTGTGTATTTACTTCGGCGTGAGACGTTCCTTTTT
CCATCCCATTTTGTCGATAGTAGCTAGTGGCAGCAATTTGTACCTAGCCA
CTTCCAAATTAATACTTACGTACGTGGAA
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protein sequence of jgi.p|Nanoce1779_2|579505

>mRNA_2217-protein ID=mRNA_2217-protein|Name=jgi.p|Nanoce1779_2|579505|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MMDPEVEEALGNETDPPSYTETDRKHMRRALRLASYALGKTRPNPVVGCV
IIDQNGKLVGEGFHPKAGEPHAEVFALREAGEKARGGTAYVTLEPCNHTG
KTPPCVDALLAAGVKKVVAGMVDPFPLVGGKGLARLEEGGVEVVVGCEKE
KCQELNRPFVHRVMHGTPLGFLPLTYRGHSFVRPSPDTVQLGDGGKALQM
IDAVVVDFNVKGEGLQTVTTLEKAGLLQDEVVRVVLANDLAGLPSEWAKN
KKKTVRKIVLTSNIEAQRAAVVGLEGRGVEVLEMPTDPLAVGKYLHDLDL
LSALWLLCPEGAKAAVKAGVVQDLWIHVTLQEADELDGVDDPDFLGRQFG
RPMKVAVMSCDAIGTKACLLSLTVDDEATL*
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mRNA from alignment at scaffold_4:1075698..1077616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2217 ID=mRNA_2217|Name=jgi.p|Nanoce1779_2|579505|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp|location=Sequence derived from alignment at scaffold_4:1075698..1077616- (Nannochloropsis oceanica)
ACAGAGCCAACCATCGTCACGCCGCAGCCGCCCACCTCAACTTGTGTCCT
TATCTGTCCCCTCGGCTTTGCGTGCATGAGGCCCTCTTTCGCATTCAGTG
GGTCGCCTCTCCTCATTCTCCTTGCTCTCGTCGTAACGACCACCGCCTTT
GTCTTGCCAACTTGCCCCCAGCAGCAGCGCTCCACCTTTGCCCAGCACAG
CCACATCTACAGCACCCGCGCCAGCCACAGTCTTTGTCGTGGTCGTCCGC
TTGGCTCATCCACGAGCCCATTAAGTGCAACGAGTAAGTATGAAGTATAT
GCAAGAGCAGCGACGCCGGATACATCCCATATGTATATCCCCCCCTTTTT
TTTTTCTTCCTTTTTTTTCTTCCTTTTTTTTCTTCCTTTTTTTCCTCCCC
TCTTTCCTTCCCTTCTCCCCCCGGAATGATTATCCACAAACATAAGGGAT
TTACCCGAGCCCTCTATTTCTCATTGAGGATGCGTTGACGAGCAAGTGTT
TCCAAATCAGACTGACCGGTCCAATTCCCCTCCCCCCCCTTCCCCCCTTT
TCCCTCACATATACCGCTTCTAGAATCCCAGTAATTCCCCTTTCTACCTC
ACATCACACCACTCAAACAGCCTTCATGATGGACCCTGAAGTCGAAGAGG
CCCTTGGAAATGAAACTGATCCCCCCTCTTATACCGAAACTGACCGTAAA
CACATGCGTCGCGCCCTCCGACTTGCCTCTTACGCGCTTGGCAAGACCCG
CCCCAACCCCGTGGTCGGATGCGTCATCATCGACCAAAACGGAAAATTAG
TCGGAGAGGGCTTCCATCCTAAGGCCGGAGAGCCTCATGCAGAAGTTTTT
GCCTTGCGAGAGGCAGGTGAAAAAGCAAGGGGAGGGACGGCATACGTGAC
GCTGGAGCCATGTAATCACACGGGGAAGACTCCTCCCTGTGTGGATGCCC
TCCTTGCGGCAGGTGTCAAAAAAGTAGTAGCGGGCATGGTCGACCCCTTT
CCGTTGGTGGGGGGGAAGGGTTTGGCAAGGCTGGAAGAGGGGGGTGTGGA
GGTGGTCGTGGGGTGTGAGAAGGAGAAGTGTCAGGAGTTGAACCGGCCGT
TTGTTCACAGGGTAATGCATGGGACACCGTTGGGGTTTTTGCCGTTGACC
TACCGGGGGCATAGCTTCGTCAGACCCTCCCCTGATACGGTCCAACTGGG
GGATGGGGGAAAGGCGCTACAAATGATTGATGCTGTAGTGGTGGACTTCA
ATGTGAAGGGTGAGGGGTTGCAGACTGTTACTACGCTTGAAAAGGCGGGT
CTGCTGCAGGATGAGGTCGTGAGGGTGGTGTTGGCAAATGACTTAGCCGG
GCTACCGAGCGAGTGGGCCAAAAACAAAAAAAAGACGGTGAGGAAAATTG
TCCTGACTTCAAACATCGAGGCGCAACGAGCTGCTGTGGTAGGGTTGGAG
GGAAGAGGGGTCGAGGTGTTGGAAATGCCGACAGATCCCTTGGCTGTGGG
CAAGTACTTGCATGACTTAGATTTGTTGTCGGCATTATGGCTGTTGTGTC
CGGAGGGGGCAAAGGCAGCGGTGAAGGCGGGAGTGGTGCAGGATTTGTGG
ATCCATGTGACGTTGCAGGAGGCGGACGAGCTTGATGGGGTGGATGATCC
CGATTTCTTGGGGAGGCAGTTTGGGAGGCCGATGAAGGTAGCGGTGATGA
GTTGTGATGCGATTGGGACAAAGGCGTGCTTGTTGAGTTTGACAGTGGAT
GATGAGGCGACGCTTTGAGGGAGGGAGTGTGAGAAGGCATGTGCGTGAGA
TAATTGTGTGTATTTACTTCGGCGTGAGACGTTCCTTTTTCCATCCCATT
TTGTCGATAGTAGCTAGTGGCAGCAATTTGTACCTAGCCACTTCCAAATT
AATACTTACGTACGTGGAA
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Coding sequence (CDS) from alignment at scaffold_4:1075698..1077616-

>mRNA_2217 ID=mRNA_2217|Name=jgi.p|Nanoce1779_2|579505|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_4:1075698..1077616- (Nannochloropsis oceanica)
ATGATGGACCCTGAAGTCGAAGAGGCCCTTGGAAATGAAACTGATCCCCC
CTCTTATACCGAAACTGACCGTAAACACATGCGTCGCGCCCTCCGACTTG
CCTCTTACGCGCTTGGCAAGACCCGCCCCAACCCCGTGGTCGGATGCGTC
ATCATCGACCAAAACGGAAAATTAGTCGGAGAGGGCTTCCATCCTAAGGC
CGGAGAGCCTCATGCAGAAGTTTTTGCCTTGCGAGAGGCAGGTGAAAAAG
CAAGGGGAGGGACGGCATACGTGACGCTGGAGCCATGTAATCACACGGGG
AAGACTCCTCCCTGTGTGGATGCCCTCCTTGCGGCAGGTGTCAAAAAAGT
AGTAGCGGGCATGGTCGACCCCTTTCCGTTGGTGGGGGGGAAGGGTTTGG
CAAGGCTGGAAGAGGGGGGTGTGGAGGTGGTCGTGGGGTGTGAGAAGGAG
AAGTGTCAGGAGTTGAACCGGCCGTTTGTTCACAGGGTAATGCATGGGAC
ACCGTTGGGGTTTTTGCCGTTGACCTACCGGGGGCATAGCTTCGTCAGAC
CCTCCCCTGATACGGTCCAACTGGGGGATGGGGGAAAGGCGCTACAAATG
ATTGATGCTGTAGTGGTGGACTTCAATGTGAAGGGTGAGGGGTTGCAGAC
TGTTACTACGCTTGAAAAGGCGGGTCTGCTGCAGGATGAGGTCGTGAGGG
TGGTGTTGGCAAATGACTTAGCCGGGCTACCGAGCGAGTGGGCCAAAAAC
AAAAAAAAGACGGTGAGGAAAATTGTCCTGACTTCAAACATCGAGGCGCA
ACGAGCTGCTGTGGTAGGGTTGGAGGGAAGAGGGGTCGAGGTGTTGGAAA
TGCCGACAGATCCCTTGGCTGTGGGCAAGTACTTGCATGACTTAGATTTG
TTGTCGGCATTATGGCTGTTGTGTCCGGAGGGGGCAAAGGCAGCGGTGAA
GGCGGGAGTGGTGCAGGATTTGTGGATCCATGTGACGTTGCAGGAGGCGG
ACGAGCTTGATGGGGTGGATGATCCCGATTTCTTGGGGAGGCAGTTTGGG
AGGCCGATGAAGGTAGCGGTGATGAGTTGTGATGCGATTGGGACAAAGGC
GTGCTTGTTGAGTTTGACAGTGGATGATGAGGCGACGCTTTGA
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Synonyms
Publications