jgi.p|Nanoce1779_2|524386, mRNA_2213 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524386
Unique Name	mRNA_2213
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1416
Alignment location	scaffold_4:1068188..1069676 -

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Properties


Property Name	Value
TranscriptId	524472
Track	FilteredModels2
ProteinId	524386

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1068188..1069676 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524386	gene_2213	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524386	mRNA_2213-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2213	CDS_2213	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1068188..1069676-
coding sequence from alignment at scaffold_4:1068188..1069676-

mRNA sequence

>mRNA_2213 ID=mRNA_2213|Name=jgi.p|Nanoce1779_2|524386|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGCGGGTGTTGCAGTCGGAGTCGATTTTGCGCCCCTCCTTGGAAGAAGC
ACTTGCAGACCCCTGGCTGGACGAGAGCCGCGTGGCCCCGCCAACCACAT
TACCTACACCACTAGCATCACGCTACACCAGCAGCATTGCTGATAGTGAA
AACAGCAGCGGCAGCTCGGACAGCAACAGCCCCTCTACCCCCTCCTTCCT
CGCCCGCCCCCCCCGGCTCCCTCCCCCCTCCCCCTCCCCTTCGTCTTCCC
CTTCCTCCTCCTCCCCAACCTCCTCTTCCTCTTCCTCCCCGCCTTCCTCC
AGCCTCAAACCCCGCTGGACCAAAACCGACTTCATCTTCCGCAAGGAGCC
CATCGGAAAAGGCCGATACGGACAAGTCTTTATGGCGAAAGAAAAAGTCA
CCCAAAAAATCGTTGCAATCAAGGTACTCTATAAACAACAATTGGAATCG
GATGGGGTCTGGCATCAAGTCAAGAACGAGATCGAGATTCATTCCCGGCT
ATCTCACCCACACATTGTTAAATGTCACGGGTACTTCCACGACGAATCCC
GCTTGTACATAGTCATGGATTATTGTCCGATGGAGCTGTACAGGCTGTTG
CAAAAATGCCCGGGGGGACGGTTTAGAGAGGGGGAGGCGGCGAGGTACGT
CCGACAGTTGTGTTCGGCGCTCATGTTTTTGCATGTCCAGGGCATTATAC
ACCGGGATCTCAAGCCGGAGAATTTGTTGTGTGCCTCGGGGGGCGAGTTG
ATGTTGGCGGATTTTGGGTGGTGTGTGGGGGCGGGAGGATTGAGGAAGAC
TTTGTGTGGGACGCCGGATTACGTCAGTCCTGAGATGCTGCGGCATGACG
GGAGGGGATATGCGGAGAGTGTAGACACGTGGTCGGTGGGGGTGCTGTGC
TACGAGTTTCTGGTGGGCCGGACCCCGTTTCGAAAGTCGAGCCCAGAGGG
GACCATGTTTGAGAACATCTTGGAGGGGAGGTTGAATTTTCCCACGTATG
TCTCGGAGGCTGCGAAGGATTTTATCAGTAAGTTGTTGGTGGTGGAGACG
GAGAGAAGGATGACTTTGAGTGAGGCGATGCGCCACCCCTGGGTGCTGCT
CTATGCACATCAGGCAACAGGACTGCTACAACAGCAGCGACAGCAACAGC
AACAGCGGCGGCAGCCTATTATATCACCGGTGAAATCGTCTGGATATGGA
TATGGCGGAAGGGGAATATCTGCCGCTGGCTCTGCCATGAAAAACAGGAG
TGATAAAAGCGGCAGCAACAGTAGCAGCGGCAATGGCAGCAGTGATATAA
ACAAGATGGTGGGGGTGGGAAGGCGAATTAAGTCATGTTCATATTCTCCT
GCAATGCCGAGACGGCAAGCAGGGGTCATCTTGCCTTTGTCTACCAGGCC
AGCCTGGACCGAGTAA

protein sequence of jgi.p|Nanoce1779_2|524386

>mRNA_2213-protein ID=mRNA_2213-protein|Name=jgi.p|Nanoce1779_2|524386|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MRVLQSESILRPSLEEALADPWLDESRVAPPTTLPTPLASRYTSSIADSE
NSSGSSDSNSPSTPSFLARPPRLPPPSPSPSSSPSSSSPTSSSSSSPPSS
SLKPRWTKTDFIFRKEPIGKGRYGQVFMAKEKVTQKIVAIKVLYKQQLES
DGVWHQVKNEIEIHSRLSHPHIVKCHGYFHDESRLYIVMDYCPMELYRLL
QKCPGGRFREGEAARYVRQLCSALMFLHVQGIIHRDLKPENLLCASGGEL
MLADFGWCVGAGGLRKTLCGTPDYVSPEMLRHDGRGYAESVDTWSVGVLC
YEFLVGRTPFRKSSPEGTMFENILEGRLNFPTYVSEAAKDFISKLLVVET
ERRMTLSEAMRHPWVLLYAHQATGLLQQQRQQQQQRRQPIISPVKSSGYG
YGGRGISAAGSAMKNRSDKSGSNSSSGNGSSDINKMVGVGRRIKSCSYSP
AMPRRQAGVILPLSTRPAWTE*

mRNA from alignment at scaffold_4:1068188..1069676-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2213 ID=mRNA_2213|Name=jgi.p|Nanoce1779_2|524386|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at scaffold_4:1068188..1069676- (Nannochloropsis oceanica)
ATGCGGGTGTTGCAGTCGGAGTCGATTTTGCGCCCCTCCTTGGAAGAAGC
ACTTGCAGACCCCTGGCTGGACGAGAGCCGCGTGGCCCCGCCAACCACAT
TACCTACACCACTAGCATCACGCTACACCAGCAGCATTGCTGATAGTGAA
AACAGCAGCGGCAGCTCGGACAGCAACAGCCCCTCTACCCCCTCCTTCCT
CGCCCGCCCCCCCCGGCTCCCTCCCCCCTCCCCCTCCCCTTCGTCTTCCC
CTTCCTCCTCCTCCCCAACCTCCTCTTCCTCTTCCTCCCCGCCTTCCTCC
AGCCTCAAACCCCGCTGGACCAAAACCGACTTCATCTTCCGCAAGGAGCC
CATCGGAAAAGGCCGATACGGACAAGTCTTTATGGCGAAAGAAAAAGTCA
CCCAAAAAATCGTTGCAATCAAGGTACTCTATAAACAACAATTGGAATCG
GATGGGGTCTGGCATCAAGTCAAGAACGAGATCGAGATTCATTCCCGGCT
ATCTCACCCACACATTGTTAAATGTCACGGGTACTTCCACGACGAATCCC
GCTTGTACATAGTCATGGATTATTGTCCGATGGAGCTGTACAGGCTGTTG
CAAAAATGCCCGGGGGGACGGTTTAGAGAGGGGGAGGCGGCGAGGTACGT
CCGACAGTTGTGTTCGGCGCTCATGTTTTTGCATGTCCAGGGCATTATAC
ACCGGGATCTCAAGCCGGAGAATTTGTTGTGTGCCTCGGGGGGCGAGTTG
ATGTTGGCGGATTTTGGGTGGTGTGTGGGGGCGGTGAAGGGGGGGGGGGG
GGGAGGGAGGATTGAGGAAGACTTTGTGTGGGACGCCGGATTACGTCAGT
CCTGAGATGCTGCGGCATGACGGGAGGGGATATGCGGAGAGTGTAGACAC
GTGGTCGGTGGGGGTGCTGTGCTACGAGTTTCTGGTGGGCCGGACCCCGT
TTCGAAAGTCGAGCCCAGTGATGTTCCAGGAGGACGAGGACGAGGAGGGG
GAGGCCTTGAAGGAGCAGGAGGGGACCATGTTTGAGAACATCTTGGAGGG
GAGGTTGAATTTTCCCACGTATGTCTCGGAGGCTGCGAAGGATTTTATCA
GTAAGTTGTTGGTGGTGGAGACGGAGAGAAGGATGACTTTGAGTGAGGCG
ATGCGCCACCCCTGGGTGCTGCTCTATGCACATCAGGCAACAGGACTGCT
ACAACAGCAGCGACAGCAACAGCAACAGCGGCGGCAGCCTATTATATCAC
CGGTGAAATCGTCTGGATATGGATATGGCGGAAGGGGAATATCTGCCGCT
GGCTCTGCCATGAAAAACAGGAGTGATAAAAGCGGCAGCAACAGTAGCAG
CGGCAATGGCAGCAGTGATATAAACAAGATGGTGGGGGTGGGAAGGCGAA
TTAAGTCATGTTCATATTCTCCTGCAATGCCGAGACGGCAAGCAGGGGTC
ATCTTGCCTTTGTCTACCAGGCCAGCCTGGACCGAGTAA

Coding sequence (CDS) from alignment at scaffold_4:1068188..1069676-

>mRNA_2213 ID=mRNA_2213|Name=jgi.p|Nanoce1779_2|524386|organism=Nannochloropsis oceanica|type=CDS|length=4248bp|location=Sequence derived from alignment at scaffold_4:1068188..1069676- (Nannochloropsis oceanica)
GAGGGGACCATGTTTGAGAACATCTTGGAGGGGAGGTTGAATTTTCCCAC
GTATGTCTCGGAGGCTGCGAAGGATTTTATCAGTAAGTTGTTGGTGGTGG
AGACGGAGAGAAGGATGACTTTGAGTGAGGCGATGCGCCACCCCTGGGTG
CTGCTCTATGCACATCAGGCAACAGGACTGCTACAACAGCAGCGACAGCA
ACAGCAACAGCGGCGGCAGCCTATTATATCACCGGTGAAATCGTCTGGAT
ATGGATATGGCGGAAGGGGAATATCTGCCGCTGGCTCTGCCATGAAAAAC
AGGAGTGATAAAAGCGGCAGCAACAGTAGCAGCGGCAATGGCAGCAGTGA
TATAAACAAGATGGTGGGGGTGGGAAGGCGAATTAAGTCATGTTCATATT
CTCCTGCAATGCCGAGACGGCAAGCAGGGGTCATCTTGCCTTTGTCTACC
AGGCCAGCCTGGACCGAGTAAGGAGGATTGAGGAAGACTTTGTGTGGGAC
GCCGGATTACGTCAGTCCTGAGATGCTGCGGCATGACGGGAGGGGATATG
CGGAGAGTGTAGACACGTGGTCGGTGGGGGTGCTGTGCTACGAGTTTCTG
GTGGGCCGGACCCCGTTTCGAAAGTCGAGCCCAATGCGGGTGTTGCAGTC
GGAGTCGATTTTGCGCCCCTCCTTGGAAGAAGCACTTGCAGACCCCTGGC
TGGACGAGAGCCGCGTGGCCCCGCCAACCACATTACCTACACCACTAGCA
TCACGCTACACCAGCAGCATTGCTGATAGTGAAAACAGCAGCGGCAGCTC
GGACAGCAACAGCCCCTCTACCCCCTCCTTCCTCGCCCGCCCCCCCCGGC
TCCCTCCCCCCTCCCCCTCCCCTTCGTCTTCCCCTTCCTCCTCCTCCCCA
ACCTCCTCTTCCTCTTCCTCCCCGCCTTCCTCCAGCCTCAAACCCCGCTG
GACCAAAACCGACTTCATCTTCCGCAAGGAGCCCATCGGAAAAGGCCGAT
ACGGACAAGTCTTTATGGCGAAAGAAAAAGTCACCCAAAAAATCGTTGCA
ATCAAGGTACTCTATAAACAACAATTGGAATCGGATGGGGTCTGGCATCA
AGTCAAGAACGAGATCGAGATTCATTCCCGGCTATCTCACCCACACATTG
TTAAATGTCACGGGTACTTCCACGACGAATCCCGCTTGTACATAGTCATG
GATTATTGTCCGATGGAGCTGTACAGGCTGTTGCAAAAATGCCCGGGGGG
ACGGTTTAGAGAGGGGGAGGCGGCGAGGTACGTCCGACAGTTGTGTTCGG
CGCTCATGTTTTTGCATGTCCAGGGCATTATACACCGGGATCTCAAGCCG
GAGAATTTGTTGTGTGCCTCGGGGGGCGAGTTGATGTTGGCGGATTTTGG
GTGGTGTGTGGGGGCGGAGGGGACCATGTTTGAGAACATCTTGGAGGGGA
GGTTGAATTTTCCCACGTATGTCTCGGAGGCTGCGAAGGATTTTATCAGT
AAGTTGTTGGTGGTGGAGACGGAGAGAAGGATGACTTTGAGTGAGGCGAT
GCGCCACCCCTGGGTGCTGCTCTATGCACATCAGGCAACAGGACTGCTAC
AACAGCAGCGACAGCAACAGCAACAGCGGCGGCAGCCTATTATATCACCG
GTGAAATCGTCTGGATATGGATATGGCGGAAGGGGAATATCTGCCGCTGG
CTCTGCCATGAAAAACAGGAGTGATAAAAGCGGCAGCAACAGTAGCAGCG
GCAATGGCAGCAGTGATATAAACAAGATGGTGGGGGTGGGAAGGCGAATT
AAGTCATGTTCATATTCTCCTGCAATGCCGAGACGGCAAGCAGGGGTCAT
CTTGCCTTTGTCTACCAGGCCAGCCTGGACCGAGTAAGGAGGATTGAGGA
AGACTTTGTGTGGGACGCCGGATTACGTCAGTCCTGAGATGCTGCGGCAT
GACGGGAGGGGATATGCGGAGAGTGTAGACACGTGGTCGGTGGGGGTGCT
GTGCTACGAGTTTCTGGTGGGCCGGACCCCGTTTCGAAAGTCGAGCCCAA
TGCGGGTGTTGCAGTCGGAGTCGATTTTGCGCCCCTCCTTGGAAGAAGCA
CTTGCAGACCCCTGGCTGGACGAGAGCCGCGTGGCCCCGCCAACCACATT
ACCTACACCACTAGCATCACGCTACACCAGCAGCATTGCTGATAGTGAAA
ACAGCAGCGGCAGCTCGGACAGCAACAGCCCCTCTACCCCCTCCTTCCTC
GCCCGCCCCCCCCGGCTCCCTCCCCCCTCCCCCTCCCCTTCGTCTTCCCC
TTCCTCCTCCTCCCCAACCTCCTCTTCCTCTTCCTCCCCGCCTTCCTCCA
GCCTCAAACCCCGCTGGACCAAAACCGACTTCATCTTCCGCAAGGAGCCC
ATCGGAAAAGGCCGATACGGACAAGTCTTTATGGCGAAAGAAAAAGTCAC
CCAAAAAATCGTTGCAATCAAGGTACTCTATAAACAACAATTGGAATCGG
ATGGGGTCTGGCATCAAGTCAAGAACGAGATCGAGATTCATTCCCGGCTA
TCTCACCCACACATTGTTAAATGTCACGGGTACTTCCACGACGAATCCCG
CTTGTACATAGTCATGGATTATTGTCCGATGGAGCTGTACAGGCTGTTGC
AAAAATGCCCGGGGGGACGGTTTAGAGAGGGGGAGGCGGCGAGGTACGTC
CGACAGTTGTGTTCGGCGCTCATGTTTTTGCATGTCCAGGGCATTATACA
CCGGGATCTCAAGCCGGAGAATTTGTTGTGTGCCTCGGGGGGCGAGTTGA
TGTTGGCGGATTTTGGGTGGTGTGTGGGGGCGGAGGGGACCATGTTTGAG
AACATCTTGGAGGGGAGGTTGAATTTTCCCACGTATGTCTCGGAGGCTGC
GAAGGATTTTATCAGTAAGTTGTTGGTGGTGGAGACGGAGAGAAGGATGA
CTTTGAGTGAGGCGATGCGCCACCCCTGGGTGCTGCTCTATGCACATCAG
GCAACAGGACTGCTACAACAGCAGCGACAGCAACAGCAACAGCGGCGGCA
GCCTATTATATCACCGGTGAAATCGTCTGGATATGGATATGGCGGAAGGG
GAATATCTGCCGCTGGCTCTGCCATGAAAAACAGGAGTGATAAAAGCGGC
AGCAACAGTAGCAGCGGCAATGGCAGCAGTGATATAAACAAGATGGTGGG
GGTGGGAAGGCGAATTAAGTCATGTTCATATTCTCCTGCAATGCCGAGAC
GGCAAGCAGGGGTCATCTTGCCTTTGTCTACCAGGCCAGCCTGGACCGAG
TAAGGAGGATTGAGGAAGACTTTGTGTGGGACGCCGGATTACGTCAGTCC
TGAGATGCTGCGGCATGACGGGAGGGGATATGCGGAGAGTGTAGACACGT
GGTCGGTGGGGGTGCTGTGCTACGAGTTTCTGGTGGGCCGGACCCCGTTT
CGAAAGTCGAGCCCAATGCGGGTGTTGCAGTCGGAGTCGATTTTGCGCCC
CTCCTTGGAAGAAGCACTTGCAGACCCCTGGCTGGACGAGAGCCGCGTGG
CCCCGCCAACCACATTACCTACACCACTAGCATCACGCTACACCAGCAGC
ATTGCTGATAGTGAAAACAGCAGCGGCAGCTCGGACAGCAACAGCCCCTC
TACCCCCTCCTTCCTCGCCCGCCCCCCCCGGCTCCCTCCCCCCTCCCCCT
CCCCTTCGTCTTCCCCTTCCTCCTCCTCCCCAACCTCCTCTTCCTCTTCC
TCCCCGCCTTCCTCCAGCCTCAAACCCCGCTGGACCAAAACCGACTTCAT
CTTCCGCAAGGAGCCCATCGGAAAAGGCCGATACGGACAAGTCTTTATGG
CGAAAGAAAAAGTCACCCAAAAAATCGTTGCAATCAAGGTACTCTATAAA
CAACAATTGGAATCGGATGGGGTCTGGCATCAAGTCAAGAACGAGATCGA
GATTCATTCCCGGCTATCTCACCCACACATTGTTAAATGTCACGGGTACT
TCCACGACGAATCCCGCTTGTACATAGTCATGGATTATTGTCCGATGGAG
CTGTACAGGCTGTTGCAAAAATGCCCGGGGGGACGGTTTAGAGAGGGGGA
GGCGGCGAGGTACGTCCGACAGTTGTGTTCGGCGCTCATGTTTTTGCATG
TCCAGGGCATTATACACCGGGATCTCAAGCCGGAGAATTTGTTGTGTGCC
TCGGGGGGCGAGTTGATGTTGGCGGATTTTGGGTGGTGTGTGGGGGCG

Synonyms

Publications