jgi.p|Nanoce1779_2|579486, mRNA_2212 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579486
Unique Name	mRNA_2212
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1249
Alignment location	scaffold_4:1066078..1067510 +

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Properties


Property Name	Value
TranscriptId	579572
Track	FilteredModels2
ProteinId	579486

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1066078..1067510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579486	gene_2212	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579486	mRNA_2212-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2212	CDS_2212	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1066078..1067510+
coding sequence from alignment at scaffold_4:1066078..1067510+

mRNA sequence

>mRNA_2212 ID=mRNA_2212|Name=jgi.p|Nanoce1779_2|579486|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp
AGCATAACATAAAAACACGGGCAAGGCTGTCCTAAACTTTTGTCCGACCT
GGTTCGGTGCACGCACGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAA
GCAGCCACCACAACCAGACAAGCATGGGATTATTGAACTTGATCAACAAT
ATAGCACATATCCCCGTGTTTGAAGACGTATGCTACTACAACTTCTTCTT
CTGGGCCTGGTTTTTGGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACG
ACCTGACCACGGGCTTCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTG
GACAAGGTGATCTTTATCACGGGATGTGACACGGGTTTTGGCAAGACCTT
GGCTTTGCGCCTGCAAAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGA
ACCAGCAAAACGCGGACGCGCTCAAGAAGGAGTGCGAAGCCTTGCACACC
GTCATCCTGGACGTGACGAAGGAGGATCAAGTCGCTCGAGTGGTCGCGGA
AGTGGACGCTGCTAACCCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAG
GGGTGTCTCGCGCGGGACTGATTGATTGGCTTAACATCTCCGACTATCGG
TTTTGCATGGAAGTGAACTACTTCGCCATGGTCTCGGTAACAAAAGCCTT
CCTCCCTTCCTTGAAGAAGAGCAAGGGTCGGGTGATCATGATGTCCTCGA
TAATGGGCGTGACATGCGGATTACCCGTCACTAGTGCTTATTCTGCTTCG
AAGCGTGCGGTTGAAATCTTCTCCTCGGCCCTGCGACAGGAACTCCGACC
TTGGGGCATCACTGTCTCTACCATCAACCCCGGCTTTCACAGAACTGAGA
TCAATCGCAACGCCTCGGATAACTTGAAATTGACATTTGAGAAAGCCCCG
CAAGAGGTTCAGGAGCAGTACGGAGAGAAGTACCTGCATGCCGCCTCCGC
TGCGATGACCCGCTATACTGAGACCAAAGCCCTGGACCCCAAGAACGTCA
TTCGGGCCTACATCCACGCCACCACCTCCACCCGACCTAAGGTTCAGTAC
CGTGTCGGTATTGATGCCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCC
GTTGCGGGTAGGAGAAGTAATAGCTTATTACGCGTCGACGACGCCCGAGA
TGCGTGTAATTCGTGGGGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGT
GTATCCCCTGCGGTGGCAGCGACTCAAAATGTTTAGAATGAACTTGAAA

protein sequence of jgi.p|Nanoce1779_2|579486

>mRNA_2212-protein ID=mRNA_2212-protein|Name=jgi.p|Nanoce1779_2|579486|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGLLNLINNIAHIPVFEDVCYYNFFFWAWFLGPLLGGLVFLHDLTTGFFF
SIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADAL
KKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLI
DWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSIMGVTCGL
PVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDN
LKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETKALDPKNVIRAYIHAT
TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAK
WGQGSAPVGVSPAVAATQNV*

mRNA from alignment at scaffold_4:1066078..1067510+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2212 ID=mRNA_2212|Name=jgi.p|Nanoce1779_2|579486|organism=Nannochloropsis oceanica|type=mRNA|length=1433bp|location=Sequence derived from alignment at scaffold_4:1066078..1067510+ (Nannochloropsis oceanica)
AGCATAACATAAAAACACGGGCAAGGCTGTCCTAAACTTTTGTCCGACCT
GGTTCGGTGCACGCACGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAA
GCAGCCACCACAACCAGACAAGCATGGGATTATTGAACTTGATCAACAAT
ATAGCACATATCCCCGTGTTTGAAGACGTATGCTACTACAACTTCTTCTT
CTGGGCCTGGTTTTTGGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACG
ACCTGACCACGGGCTTCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTG
GACAAGGTGATCTTTATCACGGGATGTGACACGGGTTTTGGCAAGACCTT
GGCTTTGCGCCTGCAAAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGA
ACCAGCAAAACGCGGACGCGCTCAAGAAGGAGGTGAGCTTGGAACCCGAA
GTGGGGGGGGATCCTTCATTCTCTCTCTTTTATCATATTGATAGCTGACA
TCTTCTCAAATTCTACTCTTCCCCGTGTCTTCCTCCCCCTCCCTCCGCTC
ACGTCGATTATCTTCCCTCTTTGATCAACCGCTCCGTCCCTCCCTTTCCC
CGTTTCCACGAAATAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTGA
CGAAGGAGGATCAAGTCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAAC
CCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGG
ACTGATTGATTGGCTTAACATCTCCGACTATCGGTTTTGCATGGAAGTGA
ACTACTTCGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAG
AAGAGCAAGGGTCGGGTGATCATGATGTCCTCGATAATGGGCGTGACATG
CGGATTACCCGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAA
TCTTCTCCTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGTC
TCTACCATCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCTC
GGATAACTTGAAATTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGC
AGTACGGAGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTAT
ACTGAGACCAAAGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCCA
CGCCACCACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGATG
CCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAA
GTAATAGCTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTGG
GGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGG
CAGCGACTCAAAATGTTTAGAATGAACTTGAAA

Coding sequence (CDS) from alignment at scaffold_4:1066078..1067510+

>mRNA_2212 ID=mRNA_2212|Name=jgi.p|Nanoce1779_2|579486|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_4:1066078..1067510+ (Nannochloropsis oceanica)
ATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCCGTGTTTGA
AGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTTGGGACCTC
TCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCTTCTTCTTC
TCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTTATCACGGG
ATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCAAAACAAAG
GCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGGACGCGCTC
AAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGA
GGATCAAGTCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGG
GGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATT
GATTGGCTTAACATCTCCGACTATCGGTTTTGCATGGAAGTGAACTACTT
CGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCA
AGGGTCGGGTGATCATGATGTCCTCGATAATGGGCGTGACATGCGGATTA
CCCGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTC
CTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCA
TCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAAC
TTGAAATTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGG
AGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGA
CCAAAGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCACC
ACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGG
CCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAAGTAATAG
CTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGGGCGAAA
TGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGAC
TCAAAATGTTTAGATGGGATTATTGAACTTGATCAACAATATAGCACATA
TCCCCGTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGG
TTTTTGGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCAC
GGGCTTCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGA
TCTTTATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGC
CTGCAAAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAA
CGCGGACGCGCTCAAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGG
ACGTGACGAAGGAGGATCAAGTCGCTCGAGTGGTCGCGGAAGTGGACGCT
GCTAACCCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCG
CGCGGGACTGATTGATTGGCTTAACATCTCCGACTATCGGTTTTGCATGG
AAGTGAACTACTTCGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCC
TTGAAGAAGAGCAAGGGTCGGGTGATCATGATGTCCTCGATAATGGGCGT
GACATGCGGATTACCCGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGG
TTGAAATCTTCTCCTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATC
ACTGTCTCTACCATCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAA
CGCCTCGGATAACTTGAAATTGACATTTGAGAAAGCCCCGCAAGAGGTTC
AGGAGCAGTACGGAGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACC
CGCTATACTGAGACCAAAGCCCTGGACCCCAAGAACGTCATTCGGGCCTA
CATCCACGCCACCACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTA
TTGATGCCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTA
GGAGAAGTAATAGCTTATTACGCGTCGACGACGCCCGAGATGCGTGTAAT
TCGTGGGGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTG
CGGTGGCAGCGACTCAAAATGTTTAG

Synonyms

Publications