jgi.p|Nanoce1779_2|579484, mRNA_2211 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579484
Unique NamemRNA_2211
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length502
Alignment locationscaffold_4:1065429..1065957 +

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Properties
Property NameValue
TranscriptId579570
TrackFilteredModels2
ProteinId579484
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1065429..1065957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579484gene_2211Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579484mRNA_2211-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2211CDS_2211Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2211 ID=mRNA_2211|Name=jgi.p|Nanoce1779_2|579484|organism=Nannochloropsis oceanica|type=mRNA|length=502bp
GAGACCCGGAGGCAAGGCGAAAGTTGCAATGAGAGGACGGGAAGGTTGGC
TGGGCTTGGTAGTTGGAGACTTGGCTGCTGTGCTGTGTATGCATGAGATC
TGGATTTGCATGTGTTTGATGAGGGGCACTGGTGAGCCGTGGTCTGGGCC
ATACTCAAGTTCTCCCCCCAAAGACCACCACATGGGGATCGCCCCGAGAA
CTCTGGACGGAAGATTAGGGATAGGTTTAGAAGGAGTTTGTAGCAGGCAG
GGCAAGTTGTCCGAGAGTTGCCCCTGGCTCTATATCTTGTGCTTGTCGGC
ATGTCGCCTGAGGGGAGCTCGATCGAAGTTGAGAGGAGCCCACCCCAAAT
ACCACAGGGCCAACACAACAAAGCCCGATAAACCCATCGGGAACAAGAGT
AGGCATACAACTTGACTATGAGATGAGCGTGAGGGCCAAGGGATGCCATG
TAGATCAAGAGATACGAGGGGGGCGGTAAAAGGACCGATTGGCGAGAAAG
AC
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protein sequence of jgi.p|Nanoce1779_2|579484

>mRNA_2211-protein ID=mRNA_2211-protein|Name=jgi.p|Nanoce1779_2|579484|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MRGREGWLGLVVGDLAAVLCMHEIWICMCLMRGTGEPWSGPYSSSPPKDH
HMGIAPRTLDGRLGIGLEGVCSRQGKLSESCPWLYILCLSACRLRGARSK
LRGAHPKYHRANTTKPDKPIGNKSRHTT*
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mRNA from alignment at scaffold_4:1065429..1065957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2211 ID=mRNA_2211|Name=jgi.p|Nanoce1779_2|579484|organism=Nannochloropsis oceanica|type=mRNA|length=529bp|location=Sequence derived from alignment at scaffold_4:1065429..1065957+ (Nannochloropsis oceanica)
GAGACCCGGAGGCAAGGCGAAAGTTGCAATGAGAGGACGGGAAGGTTGGC
TGGGCTTGGTAGTTGGAGACTTGGCTGCTGTGCTGTGTGTGAGTCGTTGT
AGTAGGATGTGTTAGATGCATGAGATCTGGATTTGCATGTGTTTGATGAG
GGGCACTGGTGAGCCGTGGTCTGGGCCATACTCAAGTTCTCCCCCCAAAG
ACCACCACATGGGGATCGCCCCGAGAACTCTGGACGGAAGATTAGGGATA
GGTTTAGAAGGAGTTTGTAGCAGGCAGGGCAAGTTGTCCGAGAGTTGCCC
CTGGCTCTATATCTTGTGCTTGTCGGCATGTCGCCTGAGGGGAGCTCGAT
CGAAGTTGAGAGGAGCCCACCCCAAATACCACAGGGCCAACACAACAAAG
CCCGATAAACCCATCGGGAACAAGAGTAGGCATACAACTTGACTATGAGA
TGAGCGTGAGGGCCAAGGGATGCCATGTAGATCAAGAGATACGAGGGGGG
CGGTAAAAGGACCGATTGGCGAGAAAGAC
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Coding sequence (CDS) from alignment at scaffold_4:1065429..1065957+

>mRNA_2211 ID=mRNA_2211|Name=jgi.p|Nanoce1779_2|579484|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_4:1065429..1065957+ (Nannochloropsis oceanica)
ATGAGAGGACGGGAAGGTTGGCTGGGCTTGGTAGTTGGAGACTTGGCTGC
TGTGCTGTGTATGCATGAGATCTGGATTTGCATGTGTTTGATGAGGGGCA
CTGGTGAGCCGTGGTCTGGGCCATACTCAAGTTCTCCCCCCAAAGACCAC
CACATGGGGATCGCCCCGAGAACTCTGGACGGAAGATTAGGGATAGGTTT
AGAAGGAGTTTGTAGCAGGCAGGGCAAGTTGTCCGAGAGTTGCCCCTGGC
TCTATATCTTGTGCTTGTCGGCATGTCGCCTGAGGGGAGCTCGATCGAAG
TTGAGAGGAGCCCACCCCAAATACCACAGGGCCAACACAACAAAGCCCGA
TAAACCCATCGGGAACAAGAGTAGGCATACAACTTGAATGAGAGGACGGG
AAGGTTGGCTGGGCTTGGTAGTTGGAGACTTGGCTGCTGTGCTGTGTATG
CATGAGATCTGGATTTGCATGTGTTTGATGAGGGGCACTGGTGAGCCGTG
GTCTGGGCCATACTCAAGTTCTCCCCCCAAAGACCACCACATGGGGATCG
CCCCGAGAACTCTGGACGGAAGATTAGGGATAGGTTTAGAAGGAGTTTGT
AGCAGGCAGGGCAAGTTGTCCGAGAGTTGCCCCTGGCTCTATATCTTGTG
CTTGTCGGCATGTCGCCTGAGGGGAGCTCGATCGAAGTTGAGAGGAGCCC
ACCCCAAATACCACAGGGCCAACACAACAAAGCCCGATAAACCCATCGGG
AACAAGAGTAGGCATACAACTTGA
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Synonyms
Publications