jgi.p|Nanoce1779_2|579479, mRNA_2210 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579479
Unique NamemRNA_2210
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1367
Alignment locationscaffold_4:1061643..1065514 -

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Properties
Property NameValue
TranscriptId579565
TrackFilteredModels2
ProteinId579479
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1061643..1065514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579479gene_2210Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579479mRNA_2210-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2210CDS_2210Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2210 ID=mRNA_2210|Name=jgi.p|Nanoce1779_2|579479|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
ACAGCACAGCAGCCAAGTCTCCAACTACCAAGCCCAGCCAACCTTCCCGT
CCTCTCATTGCAACTTTCGCCTTGCCTCCGGGTCTCCACACCTTCGATCT
CTATACAGCATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACAT
CGACTTGCTGGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGT
TGCTGGGCCCCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCT
GGGTTCTTCTTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGT
GTTCATCACGGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATC
TGGCCCAGAAGGGATTCAAAGTGTATGCAGCGTGCTTGACGGCCAAGGGC
GCGGAGAATATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGA
TGTCACCAAGGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGG
AGAACCCCCAAGGGCTATACGTGCTGGTAAACAATGCGGGTATTGCCAAG
TCGGGATTGATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGA
AGTGAACTATTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGG
TCAAACGGCGCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTC
TCTTGCGGCTACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGT
GGAGCTCTTTGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCA
AGGTCTCGACTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTG
GCCGTGCAGGGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCA
AGCAGAGTATGGCTCGAGCTATTTCGAGGGGTGCAAAGAATTCGTCAGGA
AGCATACGGAGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTA
GAGCATGCCGTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTT
GGATGCAAAGTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGG
GAGAGAAAATCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATC
GTGGGGCTCAAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGAGG
GCAAGCAAGGGAGATATAAGGTTTGTAGAGTGCTTGTGTGATGCAAGCGG
AGGGACAATAAGAACACCATGGTTATGCCGAGAAATGGGATTTTCGGCAG
GGGGGCGAGGAATGAAGGCAAGGGAATCAAATTGTGAAATAGAAGAAATA
TCTATGTTGCTTTCCAT
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protein sequence of jgi.p|Nanoce1779_2|579479

>mRNA_2210-protein ID=mRNA_2210-protein|Name=jgi.p|Nanoce1779_2|579479|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MGSFLDFWNNLCHIDLLEEWIWYSYFAGAWLLGPILAFLIVCYDVVSGFF
FPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAKGAEN
MTTECAAVQTVLLDVTKADQVQSAADRVDSENPQGLYVLVNNAGIAKSGL
IDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCG
YPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQ
GLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHA
VTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYALTTNKKMRSIVGL
KPVGKAMEAEDSRGQAREI*
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mRNA from alignment at scaffold_4:1061643..1065514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2210 ID=mRNA_2210|Name=jgi.p|Nanoce1779_2|579479|organism=Nannochloropsis oceanica|type=mRNA|length=3872bp|location=Sequence derived from alignment at scaffold_4:1061643..1065514- (Nannochloropsis oceanica)
ACAGCACAGCAGCCAAGTCTCCAACTACCAAGCCCAGCCAACCTTCCCGT
CCTCTCATTGCAACTTTCGCCTTGCCTCCGGGTCTCCACACCTTCGATCT
CTATACAGCATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACAT
CGACTTGCTGGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGT
TGCTGGGCCCCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCT
GGGTTCTTCTTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGT
GTTCATCACGGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATC
TGGCCCAGAAGGGATTCAAAGTGTATGCAGCGTGCTTGACGGCCAAGGGC
GCGGAGAATATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGA
TGTCACCAAGGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGG
AGAACCCCCAAGGGCTATACGTGCTGGTAAACAATGCGGGTATTGCCAAG
TCGGGATTGATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGA
AGTGAACTATTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGG
TCAAACGGCGCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTC
TCTTGCGGCTACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGT
GGAGCTCTTTGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCA
AGGTCTCGACTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTG
GCCGTGCAGGGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCA
AGCAGAGTATGGCTCGAGCTATTTCGAGGGGTGCAAAGAATTCGTCAGGA
AGCATACGGAGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTA
GAGCATGCCGTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTT
GGATGCAAAGTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGG
GAGAGAAAATCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATC
GTGGGGCTCAAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGAGG
GCAAGCAAGGGAGATATAAGGTTTGTAGAGTGCTTGTGTGATGCAAGCGG
AGGGACAATAAGAACACCATGGTTATGCCGAGAAATGGGATTTTCGGCAG
GGGGGCGAGGAATGAAGGCAAGGGAATCAAATTGTGAAATAGAAGAAATA
GATGCAGAGCATCATACATATATGTATATGCAGACCCGTGGGTAGCGTAT
TTGTATCATTCGTTTACACACTCTTCTGTCCTTCGTGTTTCTGTGGTGTG
TTTCGAGGGAAAAATAAACCAATGGAGTTGGAAGTCACCGATGGTTTCAA
AATCATGTTTTGTTCATCCCCCTCACCTCTGATTGCCCCCATTACCGCGG
CTACTGCTTCCAACGACACTGCTCAACTTTAGCTCACCCCACTTCCATCC
GACACTTGTATGCATACTCCATCTTCGCGTACAATACGCCCTCTCTCCCT
CCTCTCCCTTCCCCCTCCCCTTGCTCACCCATCTGCGCCTGCTTCCACTC
TCTCCAGAGTCCCTTCCTCACCGCATTCCTCCGGACAATCCCCCGGTTCC
AAATGGAGATTATTACAAGTCTTGTCAAGGGCAACAGCAGATAGAGCGCT
GCGTAGCACAACAACGCCTTTCCCACCACGTACAGAACAGTGGATGCGGG
CTCCGTAAATTGAACCCATTGCTCGCTTGCCCAGATGGCACCCACAAGAT
TGATGAGTCCTAAGGCACCCGAGAGTTGAAGGAGGTGAAGGGGGGCACGA
GAAAAGACATATCGCCGCTCGATTAGATACCCTGGGATTAAGGACGAGGA
GAAAGATGATGTAGAGGAGGAGGAGGGGGAGGAGGAGGATGAGGAGAAAG
AGGAGCAGGAAAACCGCTCGTCGCCCCCCTTTCCATCCTCCTCCTCTTTC
ATATGTGGTACTTTCTCCCCTCCTTGGTCGATTTTTGTCATTTCCACTAC
CAGCTCTCCCTTCCCTCTTTCCTCTCTCAACAATGCCGCCGCTGCTTCCT
CCCCCTCTTCCTCCCATCCCTCCCTCTCCCCCTCCCTCCCTACCACCGTC
GGCACCAGCAATGTGCTTCTTTTCGATCCCTCCCTCATGTGTGCAAAATC
ATACAAGTACCCACAATTCCTCCCCATCTTCCCATCCACACACCGCACGG
GCCTCCCTCCAAAACGGGCACACACAGGCAACATGCTCGTATCCAGTTTC
TCAGGGTCCACGTCCGTCAGCAGTGGCGCCACTTCCTCGGGTAAGACAAC
CCCATTTTGTGCGTGAATTAGCTTAGCCACGGCCTGCCACCGTTGATTCT
GGGATGGACCCGGGCTCCCATCACCAAATAGAAGAGAAAATAGAGCCTCT
AGAAACGTCATGTCCTCCTCCACTTCTTCCGCCTCCTCCTCCCCTCTCTC
CTGCTGCTGTTCCCCACCATCCTGCTCCTCGTGCCCTGCCAAACGATATG
AAGAAGAGAAGGAGGACGATCCCGCAATTCTGCGCGTCCCGGCAGATACT
CTTCCATCTCTCCCCCCTCCCCCTCCGCCTCCCCTCACCTCGGGCATCCC
TCCCTCCTCCTCATCCAGTGCATCGAGCGCCCGCCGCCTCCGTGCTTGTT
GCTCTCGCAAGCGCTGCGCTTGAAGCTGTGGGTCCAATCCAAACAAAAAT
GGGTTATAGTTCCACCACCACCACATGTAATACATGTCCCGCCAGTCATT
CCCTGCTCCTCCAAGCCCTCCCCCTCCAACGTAATGCCGTCGAGGCCGAT
GAAACACTCTCAAAGCATCCAATCCTGAATCGTGCCGGTGCTCTCCCCCA
CTGCTGCGTGCCACGACTATCACCAAGACGATCACTATCACCAGCAATGA
TAATAGTAACAATACTCCGATAGAGACACGCAGAAAGGCAAAGGCCATTC
CCCAAACCTTTGCCCCGGCTTCACGCATTCGGATTAAGACAAAACGCCGT
CGCAGAAAGGAGCGCAGACCTGGTGGAAAGACGTAGCGGATATGGTCCGT
CGAGAAAACGTTGGCAGCAAACTCCACTTCCTTGTGCTGGTGCTGGTGGT
GGTGGTGGTGCTTCTGCTGTTGGTACTTCATGATCTCGTCATTGGCCGAG
GCAGATGTGATTTCAAAAAATCCGCTACTTGCTCGCAACAACGCCATCAT
TTCCGCCTCGACCAGATCCCGCGGCAGGCCACAGTGAGCTACCACATCAT
GCACAGCGCAGGTGTAGCCCAGGGCCTCGATGGCTTGGAGCACGCCTTCG
TTTGGAATGCCGTCCTTGTCGAGTTGAAAATGGTCAGCTGAGGCTGCTGC
TGACACGCTAAATGCCTTGTGTCGGCGTGACAACGCGGCTGCCGCCATTT
AGGCTGGCCTAGTATTCACCTGTCATGATAGTGGGGGCATTGCATGGGCT
AAGCGCGAACAACAGAGAGCACAGGCAAGCACACACATTTTATTTTTTTT
GACGGGGGTGTATACCGTTTTGCCTTGAAGTGAAGAGTTCCTACATGGCT
CTCGGAATGTCAATTGACCCAACACAAACATATTTCTCTGACAGCAGCAT
CTTTCCTACGATCGCTTTTCATCCTCTTCGTTTCTTATCTTTTTGTTTAG
GATAGTGTCGATTCTGCTCCTTTCCATTACTTCCTTTTTCACACACATAA
CTTTCTCTATGTTGCTTTCCAT
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Coding sequence (CDS) from alignment at scaffold_4:1061643..1065514-

>mRNA_2210 ID=mRNA_2210|Name=jgi.p|Nanoce1779_2|579479|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_4:1061643..1065514- (Nannochloropsis oceanica)
ATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCT
GGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCC
CCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTC
TTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCAC
GGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGA
AGGGATTCAAAGTGTATGCAGCGTGCTTGACGGCCAAGGGCGCGGAGAAT
ATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAA
GGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCC
AAGGGCTATACGTGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTG
ATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTA
TTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGC
GCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGC
TACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTT
TGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGA
CTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAG
GGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTA
TGGCTCGAGCTATTTCGAGGGGTGCAAAGAATTCGTCAGGAAGCATACGG
AGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCC
GTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAA
GTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAA
TCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTC
AAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGAGGGCAAGCAAG
GGAGATATAA
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Synonyms
Publications