jgi.p|Nanoce1779_2|576589, mRNA_221 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576589
Unique NamemRNA_221
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length529
Alignment locationscaffold_3:555752..556390 +

Link to JBrowse

Properties
Property NameValue
TranscriptId576675
TrackFilteredModels2
ProteinId576589
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:555752..556390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576589gene_221Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576589mRNA_221-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_221CDS_221Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_221 ID=mRNA_221|Name=jgi.p|Nanoce1779_2|576589|organism=Nannochloropsis oceanica|type=mRNA|length=529bp
ACAGGCACCTCAGAAACTTTGCCATCATGTCCGACGTGAACGCCCACATC
ATCCAGCCCCTGAAGAAATTCGCGAAGGATTCCACACACCTCGTCAAGAA
GTGCACCAAGCCGGACCGAAAAGAGTTTGCCCGGATAGCTTATGCCACGA
GCGTGGGGTTCCTCATCATGGGCTTTATCGGCTTCTTCGTCAAGCTCATC
CACATTCCGATCAACAACATTTTGCTGGGCGGCATCTAGAACACACCCTG
CGTGCCGCCTCGAATCGCAAGAGCAGAGTGGGAAACGGTATGGGGAGACG
GACTCATGGGGTAGTCGGTATACCATATACAACTGAGAGGACGGGCCAGG
GCCGAAGGAATGAGGTCGAGATGGTGTCAAGCGCACCAATTTAGTGATGG
AACTGGTGGAAATGAGGAGTGAGACCACACAGGGACAATGACAAGCGAGG
TTCCAGTCAGAACTACAGGGACCTAACAATGGCAACACACGAAGAAACTG
ACCTTTTAGGCCCTAGAAGGGTAATTTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|576589

>mRNA_221-protein ID=mRNA_221-protein|Name=jgi.p|Nanoce1779_2|576589|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGF
IGFFVKLIHIPINNILLGGI*
back to top

mRNA from alignment at scaffold_3:555752..556390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_221 ID=mRNA_221|Name=jgi.p|Nanoce1779_2|576589|organism=Nannochloropsis oceanica|type=mRNA|length=639bp|location=Sequence derived from alignment at scaffold_3:555752..556390+ (Nannochloropsis oceanica)
ACAGGCACCTCAGAAACTTTGCCATCATGTCCGACGTGAACGCCCACATC
ATCCAGCCCCTGAAGAAATTCGCGAAGGATTCCACACACCTCGTCAAGAA
GTGCACCAAGCCGGACCGAAAAGGTACACCCAACGTTTGCAAGGCCGTCG
GGTTCTTTACACGTCCTCGCTCGCCATGCCTTTCTTCTCATCTTTTATCC
AAACTTTCATATTACGTCCTAAATTTGTTACAGAGTTTGCCCGGATAGCT
TATGCCACGAGCGTGGGGTTCCTCATCATGGGCTTTATCGGCTTCTTCGT
CAAGCTCATCCACATTCCGATCAACAACATTTTGCTGGGCGGCATCTAGA
ACACACCCTGCGTGCCGCCTCGAATCGCAAGAGCAGAGTGGGAAACGGTA
TGGGGAGACGGACTCATGGGGTAGTCGGTATACCATATACAACTGAGAGG
ACGGGCCAGGGCCGAAGGAATGAGGTCGAGATGGTGTCAAGCGCACCAAT
TTAGTGATGGAACTGGTGGAAATGAGGAGTGAGACCACACAGGGACAATG
ACAAGCGAGGTTCCAGTCAGAACTACAGGGACCTAACAATGGCAACACAC
GAAGAAACTGACCTTTTAGGCCCTAGAAGGGTAATTTGG
back to top

Coding sequence (CDS) from alignment at scaffold_3:555752..556390+

>mRNA_221 ID=mRNA_221|Name=jgi.p|Nanoce1779_2|576589|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_3:555752..556390+ (Nannochloropsis oceanica)
ATGTCCGACGTGAACGCCCACATCATCCAGCCCCTGAAGAAATTCGCGAA
GGATTCCACACACCTCGTCAAGAAGTGCACCAAGCCGGACCGAAAAGAGT
TTGCCCGGATAGCTTATGCCACGAGCGTGGGGTTCCTCATCATGGGCTTT
ATCGGCTTCTTCGTCAAGCTCATCCACATTCCGATCAACAACATTTTGCT
GGGCGGCATCTAGATGTCCGACGTGAACGCCCACATCATCCAGCCCCTGA
AGAAATTCGCGAAGGATTCCACACACCTCGTCAAGAAGTGCACCAAGCCG
GACCGAAAAGAGTTTGCCCGGATAGCTTATGCCACGAGCGTGGGGTTCCT
CATCATGGGCTTTATCGGCTTCTTCGTCAAGCTCATCCACATTCCGATCA
ACAACATTTTGCTGGGCGGCATCTAG
back to top
Synonyms
Publications