jgi.p|Nanoce1779_2|579472, mRNA_2208 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579472
Unique Name	mRNA_2208
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1644
Alignment location	scaffold_4:1060058..1061885 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579558
Track	FilteredModels2
ProteinId	579472

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1060058..1061885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579472	gene_2208	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579472	mRNA_2208-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2208	CDS_2208	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1060058..1061885+
coding sequence from alignment at scaffold_4:1060058..1061885+

mRNA sequence

>mRNA_2208 ID=mRNA_2208|Name=jgi.p|Nanoce1779_2|579472|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
AACCACAGCATCCCTTCCCAACCTTTTGCTCGACTAGTTCGGTGTACGCA
CGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAAGCAGCCACCACAACC
AGACAAGCATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCC
GTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTG
GGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCT
TCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTT
ATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCA
AAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGG
ACGCGCTCAAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTG
ACGAAGGAGGATCAAGTTGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAA
CCCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGG
GACTGATTGATTGGCTTAACATCTCCGACTTTCGGTTTTGCATGGAAGTG
AACTACTTCGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAA
GAAGAGCAAGGGTCGGGTGATCATGATGTCCTCTGCTGCGGGCGTGGCGT
GTGGATACCCTGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAA
ATCTTCTCCTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGT
CTCTACCATCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCT
CGGATAACTTGAAACTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAG
CAGTACGGAGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTA
TACTGAGACCAATGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCC
ACGCCACCACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGAT
GCCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGA
AGTAATAGCTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTG
GAGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTG
GCAGCGACTCAAAATGTTTAGAATGAACTTGAAACCAATTGGCGTGATTA
TATAGACTGTGAAGGGGGGGAAATATGGGGGACAATAGGATATGAGGTGG
TAAGACCCGTAGAGAAAAGCACGATTGACGAGATCGCGCTTCTTCCACAA
GGAAGTGAAGAACATGCGAAATCGGAGGTGCAATATACGTAACGTGAAGC
GATGGAAAGCAACATAGAGAAAGTTATGTGTGTGAAAAAGGAAGTAATGG
AAAGGAGCAGAATCGACACTATCCTAAACAAAAAGATAAGAAACGAAGAG
GATGAAAAGCGATCGTAGGAAAGATGCTGCTGTCAGAGAAATATGTTTGT
GTTGGGTCAATTGACATTCCGAGAGCCATGTAGGAACTCTTCACTTCAAG
GCAAAACGGTATACACCCCCGTCAAAAAAAATAAAATGTGTGTG

protein sequence of jgi.p|Nanoce1779_2|579472

>mRNA_2208-protein ID=mRNA_2208-protein|Name=jgi.p|Nanoce1779_2|579472|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGLLNLINNIAHIPVFEDVCYYNFFFWAWFWGPLLGGLVFLHDLTTGFFF
SIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADAL
KKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLI
DWLNISDFRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGY
PVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDN
LKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHAT
TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAK
WGQGSAPVGVSPAVAATQNV*

mRNA from alignment at scaffold_4:1060058..1061885+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2208 ID=mRNA_2208|Name=jgi.p|Nanoce1779_2|579472|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp|location=Sequence derived from alignment at scaffold_4:1060058..1061885+ (Nannochloropsis oceanica)
AACCACAGCATCCCTTCCCAACCTTTTGCTCGACTAGTTCGGTGTACGCA
CGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAAGCAGCCACCACAACC
AGACAAGCATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCC
GTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTG
GGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCT
TCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTT
ATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCA
AAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGG
ACGCGCTCAAGAAGGAGGTGAGCTTGGAACCCGAAGTGGGGGGGGATCCT
TCATTCTCTCTCTTTTATCATATTGATAGCTGACATCTTCTCAAATTCTA
CTCTTCCCCGTGTCTTCCTCCCCCTCCCTCCGCTCACGTCGATTATCTTC
CCTCTTTGATCAACCGCTCCGTCCCTCCCTTTCCCCGTTTCCACGAAATA
GTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGAGGATCAAG
TTGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGGGGCTCTTC
GCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATTGATTGGCT
TAACATCTCCGACTTTCGGTTTTGCATGGAAGTGAACTACTTCGCCATGG
TCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCAAGGGTCGG
GTGATCATGATGTCCTCTGCTGCGGGCGTGGCGTGTGGATACCCTGTCAC
TAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTCCTCGGCCC
TGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCATCAACCCC
GGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAACTTGAAACT
GACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGGAGAGAAGT
ACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGACCAATGCC
CTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCACCACCTCCAC
CCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGGCCTCTTCC
CGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAAGTAATAGCTTATTAC
GCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGAGCGAAATGGGGCCA
GGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGACTCAAAATG
TTTAGAATGAACTTGAAACCAATTGGCGTGATTATATAGACTGTGAAGGG
GGGGAAATATGGGGGACAATAGGATATGAGGTGGTAAGACCCGTAGAGAA
AAGCACGATTGACGAGATCGCGCTTCTTCCACAAGGAAGTGAAGAACATG
CGAAATCGGAGGTGCAATATACGTAACGTGAAGCGATGGAAAGCAACATA
GAGAAAGTTATGTGTGTGAAAAAGGAAGTAATGGAAAGGAGCAGAATCGA
CACTATCCTAAACAAAAAGATAAGAAACGAAGAGGATGAAAAGCGATCGT
AGGAAAGATGCTGCTGTCAGAGAAATATGTTTGTGTTGGGTCAATTGACA
TTCCGAGAGCCATGTAGGAACTCTTCACTTCAAGGCAAAACGGTATACAC
CCCCGTCAAAAAAAATAAAATGTGTGTG

Coding sequence (CDS) from alignment at scaffold_4:1060058..1061885+

>mRNA_2208 ID=mRNA_2208|Name=jgi.p|Nanoce1779_2|579472|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_4:1060058..1061885+ (Nannochloropsis oceanica)
ATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCCGTGTTTGA
AGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTGGGGACCTC
TCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCTTCTTCTTC
TCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTTATCACGGG
ATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCAAAACAAAG
GCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGGACGCGCTC
AAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGA
GGATCAAGTTGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGG
GGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATT
GATTGGCTTAACATCTCCGACTTTCGGTTTTGCATGGAAGTGAACTACTT
CGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCA
AGGGTCGGGTGATCATGATGTCCTCTGCTGCGGGCGTGGCGTGTGGATAC
CCTGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTC
CTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCA
TCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAAC
TTGAAACTGACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGG
AGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGA
CCAATGCCCTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCACC
ACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGG
CCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAAGTAATAG
CTTATTACGCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGAGCGAAA
TGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGAC
TCAAAATGTTTAGATGGGATTATTGAACTTGATCAACAATATAGCACATA
TCCCCGTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGG
TTTTGGGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCAC
GGGCTTCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGA
TCTTTATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGC
CTGCAAAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAA
CGCGGACGCGCTCAAGAAGGAGTGCGAAGCCTTGCACACCGTCATCCTGG
ACGTGACGAAGGAGGATCAAGTTGCTCGAGTGGTCGCGGAAGTGGACGCT
GCTAACCCCCAGGGGCTCTTCGCCCTTGTCAATAACGCAGGGGTGTCTCG
CGCGGGACTGATTGATTGGCTTAACATCTCCGACTTTCGGTTTTGCATGG
AAGTGAACTACTTCGCCATGGTCTCGGTAACAAAAGCCTTCCTCCCTTCC
TTGAAGAAGAGCAAGGGTCGGGTGATCATGATGTCCTCTGCTGCGGGCGT
GGCGTGTGGATACCCTGTCACTAGTGCTTATTCTGCTTCGAAGCGTGCGG
TTGAAATCTTCTCCTCGGCCCTGCGACAGGAACTCCGACCTTGGGGCATC
ACTGTCTCTACCATCAACCCCGGCTTTCACAGAACTGAGATCAATCGCAA
CGCCTCGGATAACTTGAAACTGACATTTGAGAAAGCCCCGCAAGAGGTTC
AGGAGCAGTACGGAGAGAAGTACCTGCATGCCGCCTCCGCTGCGATGACC
CGCTATACTGAGACCAATGCCCTGGACCCCAAGAACGTCATTCGGGCCTA
CATCCACGCCACCACCTCCACCCGACCTAAGGTTCAGTACCGTGTCGGTA
TTGATGCCAAGGGCCTCTTCCCGTTCTTGCAGATCTTCCCGTTGCGGGTA
GGAGAAGTAATAGCTTATTACGCGTCGACGACGCCCGAGATGCGTGTAAT
TCGTGGAGCGAAATGGGGCCAGGGCTCGGCACCCGTGGGTGTATCCCCTG
CGGTGGCAGCGACTCAAAATGTTTAG

Synonyms

Publications