jgi.p|Nanoce1779_2|538385, mRNA_2207 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|538385
Unique NamemRNA_2207
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1623
Alignment locationscaffold_4:1057789..1059411 -

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Properties
Property NameValue
TranscriptId538471
TrackFilteredModels2
ProteinId538385
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1057789..1059411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538385gene_2207Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538385mRNA_2207-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2207CDS_2207Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2207 ID=mRNA_2207|Name=jgi.p|Nanoce1779_2|538385|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ACAGCAGAGCAGCCAAGTCTCCAACTACCAAGCCCAGCCAACCTTCCCGT
CCTCTCATTACAACTTTCGCCTTGCCTCCGGGTCTCCAGACCTTCGATCT
CTATACAGCATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACAT
CGACTTGCTGGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGT
TGCTGGGCCCCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCT
GGGTTCTTCTTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGT
GTTCATCACGGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATC
TGGCCCAGAAGGGATTCAAAGTGTATGCGGCGTGCTTGACGGCCGAGGGC
GCGGAGAATATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGA
TGTCACCAAGGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGG
AGAACCCCCAAGGGCTATACGCGCTGGTAAACAATGCGGGTATTGCCAAG
TCGGGATTGATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGA
AGTGAACTATTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGG
TCAAACGGCGCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTC
TCTTGCGGCTACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGT
GGAGCTCTTTGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCA
AGGTCTCGACTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTG
GCCGTGCAGGGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCA
AGCAGAGTATGGCTCGAGCTATTTCGAGGGGTGCAAGGAATTCGTCAGGA
AGCATACGGAGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTA
GAGCATGCCGTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTT
GGATGCAAAGTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGG
GAGAGAAAATCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATC
GTGGGGCTCAAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGGGG
GCAAGCAAGGGAGATAGAAGGTTTGTAGAGTGCTTGTGTGATGCAAGCAG
AGTGACAATAAGAACACCATGGTTATGCCGAGAAATGGGATTTTCGGCAG
GGGGTCGAGGAATGAAGGCAAGGGAATCAAATTGTGAAATAGAAGACATA
CAGTGACAGAGGGGAAGCGGGAGCATAGCGAAACCAGTAGGCCAGAAATT
ATCAACTTTCTAAGTTGCTTTCCATAAAACCCCATAAAATTAAGAAACTA
CCACACTCACGCCTGCACCATATATAGCTCCTCAAGAGACATACCGCCTT
GTAAGTCGGGCTCATCTTTCATTTGCATGCTGTCCCTCCAAGTCTAGTAC
GTCCCCCTATTCCGCGAGTCGGCGACGAAGAAGCAGCAAAGCCTCTCGCT
TTATTCTACAACACCAACCCACA
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protein sequence of jgi.p|Nanoce1779_2|538385

>mRNA_2207-protein ID=mRNA_2207-protein|Name=jgi.p|Nanoce1779_2|538385|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MGSFLDFWNNLCHIDLLEEWIWYSYFAGAWLLGPILAFLIVCYDVVSGFF
FPVWHIAPSLDKVVFITGCDSGFGKALAIHLAQKGFKVYAACLTAEGAEN
MTTECAAVQTVLLDVTKADQVQSAADRVDSENPQGLYALVNNAGIAKSGL
IDWFSMSDFRVCMEVNYFGVIAVTKAFLPLVKRRKGRIVVVSSVAGVSCG
YPLSTPYSASKHAVELFASALRQEMRPWGIKVSTINPGFHRTEMNMVAVQ
GLEGCWAKVPPHIQAEYGSSYFEGCKEFVRKHTEEVVFDPVNVVRALEHA
VTCTRPRVQYRVGLDAKYGLVWTQIFPLRLGEKIIYALTTNKKMRSIVGL
KPVGKAMEAEDSRGQAREIEGL*
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mRNA from alignment at scaffold_4:1057789..1059411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2207 ID=mRNA_2207|Name=jgi.p|Nanoce1779_2|538385|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_4:1057789..1059411- (Nannochloropsis oceanica)
ACAGCAGAGCAGCCAAGTCTCCAACTACCAAGCCCAGCCAACCTTCCCGT
CCTCTCATTACAACTTTCGCCTTGCCTCCGGGTCTCCAGACCTTCGATCT
CTATACAGCATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACAT
CGACTTGCTGGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGT
TGCTGGGCCCCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCT
GGGTTCTTCTTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGT
GTTCATCACGGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATC
TGGCCCAGAAGGGATTCAAAGTGTATGCGGCGTGCTTGACGGCCGAGGGC
GCGGAGAATATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGA
TGTCACCAAGGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGG
AGAACCCCCAAGGGCTATACGCGCTGGTAAACAATGCGGGTATTGCCAAG
TCGGGATTGATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGA
AGTGAACTATTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGG
TCAAACGGCGCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTC
TCTTGCGGCTACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGT
GGAGCTCTTTGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCA
AGGTCTCGACTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTG
GCCGTGCAGGGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCA
AGCAGAGTATGGCTCGAGCTATTTCGAGGGGTGCAAGGAATTCGTCAGGA
AGCATACGGAGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTA
GAGCATGCCGTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTT
GGATGCAAAGTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGG
GAGAGAAAATCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATC
GTGGGGCTCAAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGGGG
GCAAGCAAGGGAGATAGAAGGTTTGTAGAGTGCTTGTGTGATGCAAGCAG
AGTGACAATAAGAACACCATGGTTATGCCGAGAAATGGGATTTTCGGCAG
GGGGTCGAGGAATGAAGGCAAGGGAATCAAATTGTGAAATAGAAGACATA
CAGTGACAGAGGGGAAGCGGGAGCATAGCGAAACCAGTAGGCCAGAAATT
ATCAACTTTCTAAGTTGCTTTCCATAAAACCCCATAAAATTAAGAAACTA
CCACACTCACGCCTGCACCATATATAGCTCCTCAAGAGACATACCGCCTT
GTAAGTCGGGCTCATCTTTCATTTGCATGCTGTCCCTCCAAGTCTAGTAC
GTCCCCCTATTCCGCGAGTCGGCGACGAAGAAGCAGCAAAGCCTCTCGCT
TTATTCTACAACACCAACCCACA
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Coding sequence (CDS) from alignment at scaffold_4:1057789..1059411-

>mRNA_2207 ID=mRNA_2207|Name=jgi.p|Nanoce1779_2|538385|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at scaffold_4:1057789..1059411- (Nannochloropsis oceanica)
ATGGGCAGCTTCCTTGACTTCTGGAACAACTTGTGCCACATCGACTTGCT
GGAGGAGTGGATCTGGTACAGCTACTTCGCCGGTGCCTGGTTGCTGGGCC
CCATCTTGGCCTTCCTGATTGTGTGTTATGACGTTGTCTCTGGGTTCTTC
TTTCCTGTTTGGCACATTGCGCCTAGCCTGGACAAGGTGGTGTTCATCAC
GGGCTGTGACTCGGGCTTTGGCAAGGCCTTGGCCATACATCTGGCCCAGA
AGGGATTCAAAGTGTATGCGGCGTGCTTGACGGCCGAGGGCGCGGAGAAT
ATGACAACGGAGTGTGCGGCGGTGCAGACGGTGCTGTTGGATGTCACCAA
GGCAGACCAAGTTCAGTCGGCGGCGGATCGCGTCGATTCGGAGAACCCCC
AAGGGCTATACGCGCTGGTAAACAATGCGGGTATTGCCAAGTCGGGATTG
ATTGACTGGTTTAGCATGTCCGACTTTCGGGTTTGCATGGAAGTGAACTA
TTTTGGGGTCATCGCAGTGACCAAGGCGTTCTTACCCCTGGTCAAACGGC
GCAAGGGTCGGATAGTCGTCGTCTCCTCCGTCGCCGGTGTCTCTTGCGGC
TACCCTTTAAGCACACCCTACAGCGCATCGAAGCACGCTGTGGAGCTCTT
TGCCTCGGCGTTGCGTCAAGAGATGCGGCCCTGGGGAATCAAGGTCTCGA
CTATCAATCCTGGCTTTCATCGGACTGAGATGAACATGGTGGCCGTGCAG
GGGCTGGAGGGCTGCTGGGCCAAGGTGCCCCCCCATATTCAAGCAGAGTA
TGGCTCGAGCTATTTCGAGGGGTGCAAGGAATTCGTCAGGAAGCATACGG
AGGAAGTGGTTTTTGACCCGGTCAATGTGGTGCGGGCGTTAGAGCATGCC
GTGACGTGCACACGGCCTCGGGTCCAATATCGCGTGGGTTTGGATGCAAA
GTACGGCTTGGTATGGACGCAAATTTTCCCGTTGCGTCTGGGAGAGAAAA
TCATCTACGCTTTGACCACAAATAAGAAGATGCGCAGCATCGTGGGGCTC
AAGCCCGTGGGGAAGGCCATGGAGGCGGAGGACTCTCGGGGGCAAGCAAG
GGAGATAGAAGGTTTGTAG
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Synonyms
Publications