jgi.p|Nanoce1779_2|579468, mRNA_2206 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579468
Unique NamemRNA_2206
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length292
Alignment locationscaffold_4:1057497..1057788 +

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Properties
Property NameValue
TranscriptId579554
TrackFilteredModels2
ProteinId579468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1057497..1057788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579468gene_2206Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579468mRNA_2206-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2206CDS_2206Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2206 ID=mRNA_2206|Name=jgi.p|Nanoce1779_2|579468|organism=Nannochloropsis oceanica|type=mRNA|length=292bp
TAACCCATGTTGTTACTGATGCCATCACCGCTGCCGACGCCACTACCCCC
TGCAGTCATACCCCCTGCATTACTCATTGTCATGACTGCTTGGTGCTGGT
CGGGGTTGGTCGTTTGGTACACCATGGCGAAAGGGTACATGGGATACGAT
GCTCCTTCCACGCCTGATGTTGTTGTGCCCGGCAGCTGCTGCCTCCTTCC
ATCCACTCCACCGCCACCACCACCGTCCCTGGCGCTGTCCATCCCACCTG
CTGCTGTATTCTGTCTGAGAAGGGGTTGAAAGGCGTGAGACG
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protein sequence of jgi.p|Nanoce1779_2|579468

>mRNA_2206-protein ID=mRNA_2206-protein|Name=jgi.p|Nanoce1779_2|579468|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MLLLMPSPLPTPLPPAVIPPALLIVMTAWCWSGLVVWYTMAKGYMGYDAP
STPDVVVPGSCCLLPSTPPPPPPSLALSIPPAAVFCLRRG*
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mRNA from alignment at scaffold_4:1057497..1057788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2206 ID=mRNA_2206|Name=jgi.p|Nanoce1779_2|579468|organism=Nannochloropsis oceanica|type=mRNA|length=292bp|location=Sequence derived from alignment at scaffold_4:1057497..1057788+ (Nannochloropsis oceanica)
TAACCCATGTTGTTACTGATGCCATCACCGCTGCCGACGCCACTACCCCC
TGCAGTCATACCCCCTGCATTACTCATTGTCATGACTGCTTGGTGCTGGT
CGGGGTTGGTCGTTTGGTACACCATGGCGAAAGGGTACATGGGATACGAT
GCTCCTTCCACGCCTGATGTTGTTGTGCCCGGCAGCTGCTGCCTCCTTCC
ATCCACTCCACCGCCACCACCACCGTCCCTGGCGCTGTCCATCCCACCTG
CTGCTGTATTCTGTCTGAGAAGGGGTTGAAAGGCGTGAGACG
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Coding sequence (CDS) from alignment at scaffold_4:1057497..1057788+

>mRNA_2206 ID=mRNA_2206|Name=jgi.p|Nanoce1779_2|579468|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_4:1057497..1057788+ (Nannochloropsis oceanica)
ATGTTGTTACTGATGCCATCACCGCTGCCGACGCCACTACCCCCTGCAGT
CATACCCCCTGCATTACTCATTGTCATGACTGCTTGGTGCTGGTCGGGGT
TGGTCGTTTGGTACACCATGGCGAAAGGGTACATGGGATACGATGCTCCT
TCCACGCCTGATGTTGTTGTGCCCGGCAGCTGCTGCCTCCTTCCATCCAC
TCCACCGCCACCACCACCGTCCCTGGCGCTGTCCATCCCACCTGCTGCTG
TATTCTGTCTGAGAAGGGGTTGA
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Synonyms
Publications