jgi.p|Nanoce1779_2|579458, mRNA_2203 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579458
Unique Name	mRNA_2203
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2016
Alignment location	scaffold_4:1052423..1054438 -

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Properties


Property Name	Value
TranscriptId	579544
Track	FilteredModels2
ProteinId	579458

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1052423..1054438 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579458	gene_2203	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579458	mRNA_2203-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2203	CDS_2203	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1052423..1054438-
coding sequence from alignment at scaffold_4:1052423..1054438-

mRNA sequence

>mRNA_2203 ID=mRNA_2203|Name=jgi.p|Nanoce1779_2|579458|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
CCCCTCTTCTCGCTGTTGCTCTTGCTGTACCGCCAATGTCAACCTTAACA
GCTCCGTTGTACAAAACAAAAGCAGTCGGAGCACACTCGGCTGTTTCACC
AAGACCTTTAATCCCCTCTGAAAAACCTGCATCTGTATCGGTAAGAACCA
TGCAAGCTCTGTCCCCGTCGTCTTATTTGCCGCGAAGCACCAAATGGTAT
ACCCCAAAATCTGTGCTTCTTCCTTTTCATACTCCTCCATCAAAGCAAAA
CAGAACGGAAGCAAATGCCCCAGCACTTCACCATTCACCTCTCCTAATTT
TAACCCGCTTCGTACCAAAGCGAGGGCAGCGCGCCCGAGGCGCTGGGCTG
CTTCCTTCTCTTTATGCGCGGCTCGAGCGGTGGACCAAGCTAGGCGTATT
CGGGTGAGGAGTTGAATGACGAGATGGGAAGGTGGAGGAGGAGGAGGATG
AGGAGGAGGAGAGGAAGGAGAGAGAGAGATTATCTTTTGTTTGTTTTTCG
TCGTCTCCTCCTTTTTCCTCTCGCCAGCCCGTCTTTCTTCTTGACCACGA
CAGGCTTCACGGAAACGCACCCACATTCCACGAGCTATCTCAAAAAGCTC
TGCACGATCCTCCCCCCCCGTCAAAGGCAGGATGACCCCTCTTCCCTCGT
CCGTGAGTGTGGGAGGAAGAAGCAGCTCTGGCTTTTTCCACCCTTGTAAC
CCTCCACCAAACGAGGGGCCATTTGTAAGTTCGGTGAGTGTTGTACTGAC
ATCCCAAATGGGTTCAAGCAGTGATAATGCGGCGATTACACAGTCCAACG
CTAGAGGGGAGGACAAGGACGAGGAGGACGTGGAGGAAAAGGGAATGTAA
TGGGCCAGGGCCAGCGCGCAACAATGGAGGGAGAGCAGGCTCGGAGAACA
GGTGATGAGCGCGAGGGCCGCATGAATGACGTCTTCGTCGAGATTGCCGC
TGTGCTCATCTTTGTCGCCATCATCTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTCGTGGGGCTG
TTGGTGCTGTTGCTGCTGCTGCGAGCCATCCAGTCTTCCCCCCTCCATCG
CCAGAGCTAAGATCAACGCTCCTCCCTCCCCTTCCAATTTCATGGTATTG
GAAATGGTTCTTCTTCTTCTTATTAAGGCTTCTCTTACTGCTGCGCACAA
CGGCGACAAAATCTCGGATTTCAGCACGGAGGGCGCAGCGCTTGCGCCGC
CGTGGCCCTTGATAACTAGGTGGTGGTATTGTGATTCGTCGTTGACGATG
GTGATGCCCCACCCAGGGCGCTTCTTGATTGAGGAGAGTAGCGCAGTGCC
TATGTCTTGCAAAGCGTATATGACATCTTCGTCGCTGTTGCTTGATGATG
AGGAGGAGGGCGAGCAAGGAGGAGGCAGGGCGTGGTCCAAGCAGGTCCGC
GCACTCGCCCACGCTCCTTGCTCTACCCAGTTAGTGTACTCCAAAACCAA
GGCCGCTAATCTCGGCGTGTAGCGTGGCTGCAATATCTTCGGATGGCTTT
CCTTCTCTTTGCGACTCTGCTTCTCTTGCAAGTCCCGCCAGGACGCCTCG
GCGTCGGCCGCGGCCACCCCTTCTTGTTCCAATCGCAACGCCTCGGGCGG
AAGCCATTCATGCTCGTCATGCTGTTGCGGCCGAAAGCGATGGGACCCCT
GTTTCACCTCGTGAATCAGAATGTCTTCCATAATCCTGATTGGGAATGTC
GGCGTGGGGTATGTAAAAGAATGAGGAGGAGCGACAAGATGGCAGGACGA
AAGACGTAGGAGGCACAGAACAAGGGGGCCCGCGTACGCTCCCATGCTGC
CTCCCAGATGGCTTATCATTCCGCTATCCTCCCATTGCGACCCACATTTC
ACCCAGCACTATGAACAGCCCACGATCGACAAGAGGCAAAAAAATAGCCC
TGTATCCACCGCAAATTGCAGTTTGCGGTAGTAATAACAAAGTTACCAGA
CCCCCCCGACCTCCCC

protein sequence of jgi.p|Nanoce1779_2|579458

>mRNA_2203-protein ID=mRNA_2203-protein|Name=jgi.p|Nanoce1779_2|579458|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MTSSSRLPLCSSLSPSSCCCCCCCCCCCCCCCCCCCCCSWGCWCCCCCCE
PSSLPPSIARAKINAPPSPSNFMVLEMVLLLLIKASLTAAHNGDKISDFS
TEGAALAPPWPLITRWWYCDSSLTMVMPHPGRFLIEESSAVPMSCKAYMT
SSSLLLDDEEEGEQGGGRAWSKQVRALAHAPCSTQLVYSKTKAANLGV*

mRNA from alignment at scaffold_4:1052423..1054438-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2203 ID=mRNA_2203|Name=jgi.p|Nanoce1779_2|579458|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at scaffold_4:1052423..1054438- (Nannochloropsis oceanica)
CCCCTCTTCTCGCTGTTGCTCTTGCTGTACCGCCAATGTCAACCTTAACA
GCTCCGTTGTACAAAACAAAAGCAGTCGGAGCACACTCGGCTGTTTCACC
AAGACCTTTAATCCCCTCTGAAAAACCTGCATCTGTATCGGTAAGAACCA
TGCAAGCTCTGTCCCCGTCGTCTTATTTGCCGCGAAGCACCAAATGGTAT
ACCCCAAAATCTGTGCTTCTTCCTTTTCATACTCCTCCATCAAAGCAAAA
CAGAACGGAAGCAAATGCCCCAGCACTTCACCATTCACCTCTCCTAATTT
TAACCCGCTTCGTACCAAAGCGAGGGCAGCGCGCCCGAGGCGCTGGGCTG
CTTCCTTCTCTTTATGCGCGGCTCGAGCGGTGGACCAAGCTAGGCGTATT
CGGGTGAGGAGTTGAATGACGAGATGGGAAGGTGGAGGAGGAGGAGGATG
AGGAGGAGGAGAGGAAGGAGAGAGAGAGATTATCTTTTGTTTGTTTTTCG
TCGTCTCCTCCTTTTTCCTCTCGCCAGCCCGTCTTTCTTCTTGACCACGA
CAGGCTTCACGGAAACGCACCCACATTCCACGAGCTATCTCAAAAAGCTC
TGCACGATCCTCCCCCCCCGTCAAAGGCAGGATGACCCCTCTTCCCTCGT
CCGTGAGTGTGGGAGGAAGAAGCAGCTCTGGCTTTTTCCACCCTTGTAAC
CCTCCACCAAACGAGGGGCCATTTGTAAGTTCGGTGAGTGTTGTACTGAC
ATCCCAAATGGGTTCAAGCAGTGATAATGCGGCGATTACACAGTCCAACG
CTAGAGGGGAGGACAAGGACGAGGAGGACGTGGAGGAAAAGGGAATGTAA
TGGGCCAGGGCCAGCGCGCAACAATGGAGGGAGAGCAGGCTCGGAGAACA
GGTGATGAGCGCGAGGGCCGCATGAATGACGTCTTCGTCGAGATTGCCGC
TGTGCTCATCTTTGTCGCCATCATCTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTCGTGGGGCTG
TTGGTGCTGTTGCTGCTGCTGCGAGCCATCCAGTCTTCCCCCCTCCATCG
CCAGAGCTAAGATCAACGCTCCTCCCTCCCCTTCCAATTTCATGGTATTG
GAAATGGTTCTTCTTCTTCTTATTAAGGCTTCTCTTACTGCTGCGCACAA
CGGCGACAAAATCTCGGATTTCAGCACGGAGGGCGCAGCGCTTGCGCCGC
CGTGGCCCTTGATAACTAGGTGGTGGTATTGTGATTCGTCGTTGACGATG
GTGATGCCCCACCCAGGGCGCTTCTTGATTGAGGAGAGTAGCGCAGTGCC
TATGTCTTGCAAAGCGTATATGACATCTTCGTCGCTGTTGCTTGATGATG
AGGAGGAGGGCGAGCAAGGAGGAGGCAGGGCGTGGTCCAAGCAGGTCCGC
GCACTCGCCCACGCTCCTTGCTCTACCCAGTTAGTGTACTCCAAAACCAA
GGCCGCTAATCTCGGCGTGTAGCGTGGCTGCAATATCTTCGGATGGCTTT
CCTTCTCTTTGCGACTCTGCTTCTCTTGCAAGTCCCGCCAGGACGCCTCG
GCGTCGGCCGCGGCCACCCCTTCTTGTTCCAATCGCAACGCCTCGGGCGG
AAGCCATTCATGCTCGTCATGCTGTTGCGGCCGAAAGCGATGGGACCCCT
GTTTCACCTCGTGAATCAGAATGTCTTCCATAATCCTGATTGGGAATGTC
GGCGTGGGGTATGTAAAAGAATGAGGAGGAGCGACAAGATGGCAGGACGA
AAGACGTAGGAGGCACAGAACAAGGGGGCCCGCGTACGCTCCCATGCTGC
CTCCCAGATGGCTTATCATTCCGCTATCCTCCCATTGCGACCCACATTTC
ACCCAGCACTATGAACAGCCCACGATCGACAAGAGGCAAAAAAATAGCCC
TGTATCCACCGCAAATTGCAGTTTGCGGTAGTAATAACAAAGTTACCAGA
CCCCCCCGACCTCCCC

Coding sequence (CDS) from alignment at scaffold_4:1052423..1054438-

>mRNA_2203 ID=mRNA_2203|Name=jgi.p|Nanoce1779_2|579458|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_4:1052423..1054438- (Nannochloropsis oceanica)
ATGACGTCTTCGTCGAGATTGCCGCTGTGCTCATCTTTGTCGCCATCATC
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGCTCGTGGGGCTGTTGGTGCTGTTGCTGCTGCTGCGAG
CCATCCAGTCTTCCCCCCTCCATCGCCAGAGCTAAGATCAACGCTCCTCC
CTCCCCTTCCAATTTCATGGTATTGGAAATGGTTCTTCTTCTTCTTATTA
AGGCTTCTCTTACTGCTGCGCACAACGGCGACAAAATCTCGGATTTCAGC
ACGGAGGGCGCAGCGCTTGCGCCGCCGTGGCCCTTGATAACTAGGTGGTG
GTATTGTGATTCGTCGTTGACGATGGTGATGCCCCACCCAGGGCGCTTCT
TGATTGAGGAGAGTAGCGCAGTGCCTATGTCTTGCAAAGCGTATATGACA
TCTTCGTCGCTGTTGCTTGATGATGAGGAGGAGGGCGAGCAAGGAGGAGG
CAGGGCGTGGTCCAAGCAGGTCCGCGCACTCGCCCACGCTCCTTGCTCTA
CCCAGTTAGTGTACTCCAAAACCAAGGCCGCTAATCTCGGCGTGTAG

Synonyms

Publications