jgi.p|Nanoce1779_2|579456, mRNA_2202 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579456
Unique Name	mRNA_2202
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2457
Alignment location	scaffold_4:1049707..1052390 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579542
Track	FilteredModels2
ProteinId	579456

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1049707..1052390 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579456	gene_2202	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579456	mRNA_2202-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2202	CDS_2202	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1049707..1052390+
coding sequence from alignment at scaffold_4:1049707..1052390+

mRNA sequence

>mRNA_2202 ID=mRNA_2202|Name=jgi.p|Nanoce1779_2|579456|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp
GGGCGGGGGGCGCGGGGTGTCATGCGACCGGTGTACAGGCGCAGTGGGGC
GCAGGCCTACAGATGTTCGTTGGGGGCGGTGTCCTGGTCACTGCAGGGTA
CAGCCACATATCGGTGAACGGGGCGGTTATGCGCGGGGGCTTCGGTCTCT
TCTCTGTTGGTGGTGGGCTGCACTTACAAACAGGATACCTCCAATCCCGG
GCGTGGGGTGTTGGTTCCATGAACGTGGCTGGTCAGACATTTTCCGTCGG
CGGCGGAATTCATCAAATGATTGGGGGAGCCATCGCCACCACCAGTATTG
CTAACGTGTTTTTCGGGGCCGGTGGGACGACCTTTGTAGGCTCGGGACAG
CAGCGCTGGATTGGTGTGGTGCAAGCTCGCTCGGCGGTGGCTCAAACGCA
GTATGGTGCTGGTCTTTTCATGTATAATGGGGCGGGAACAGTTATCGTTG
CTTATGTCACACAGGTCAGTGCGCAAGTGGCCCGCGCGCAATTTGGCGTG
GGGAATGACATCTTTTTGGGGGCTGGATGGTTGTCGAATGTGAATACCAC
AAGGTATGGGGCTCAAGTTGTGAATGCTTTTTTCGGGGAAGGAAACCAAA
TCTATGTTGGGGCTGGTGGCGCGGTAATCATTAGGTGTTTCACCATAACC
TTCCGCGGATATGGCTTCTCGACGACGAAAAATTTGTACACGATTGCGGG
GACGGGCGTGTCACGCACGCAAGCGCTGAAGAATGTGGTAGTAACGAAGG
CGGGACAAACACTATTGCCCTGGCAGCAATCACCCCGGCCCAAGCGGAGA
GACCTCGAGAATGAGGTGGGTGGAGAGGAAGATTCAGAGGTTGAGATTGG
GGTGTTTGATAGTGCGCGAAATGCTTATATGGATGGGGAGGGCAAGAGTA
AGTTGATTGTGATTCAATCGATGTTGGAGGAAGGGAAGCAGGTTGTGATT
GAGGACGCGACACCCTTTGAGGCCAAGGAGCTGAAGCACTACTGGGGGGG
GTTAGCGCAAATATTGGCCGATGGTGCGGTGACACGGGGAAGGGGGAAAG
TGCTGAACACGACCAAAGGGATGATTTATGTGAATAACACGAATTGTTTT
GTTTGTTCCGTAGGACCGGGCACTTCGGCTGAGCATATGACAGGACCGTC
TTCATGTGTGGTTTCTGATGCGTGTTCAGAGGCGGAGACGCCTGCGGCGG
CATTTGCTTCAGCGAAGGAAGCAGCAAATGTCGCAGCTGCAGAAGCAGAA
GGTGATGACGTGAAGCCTTTTGACCTGTCTTTTCCCGGGATGGGTGCTGG
AAGTTTGCATAGAGAGTTGACAGAGAGGGAGATTGAGTTACCGGACGTCT
GGATGCTATGGCATGAGATGACTGTGTATTGCCGCACGACTGATCCGAGT
CTCGATACGCAGGGCATAATCGATGAGGGCTGTGTGAGCGAGAATTATGT
CAAGGATATTGTACGGGGCTATCTCGGACCGACATACGCACAGGATGATT
ACCAGCTGGCCGTGGCTTCTGCAAATGTGCATGATGCGATCAAAGCGCTA
GTAGAGGAGCCACTGGCGGCCGCTATGACTCCGGAATGGAACGCAGACTG
TGAGGGCTGGACAAAATTCAACATATATATTACGGCATCTGACCCCGTGA
TAGAGGAGGCATTGACGGAGGAATGGGAGGCAATTGTCGATAACCCCTTG
GACTTCCAGATAACGCTGCTGCAGAATTACGATGCCACAGCGAAGATCAC
GCCTTGCTCTCTGTCTATCAAGCGGGTTGGTACGGCTAAGTACCCTAGCC
TTCAAAATATGAAGGGCTTCAAGCCCCTGAAGAACGGAATGTCTCTGATT
GGTCCCAGCTTGACGGTGGCTGCCGAAGCAGCCATTGTGCCCGTGACTGA
GCTGGTCGAAGGGCAGACTTACAAGCTGTATGTCCAGAACTTTATGAAGA
GCAGTCAGGTTAATGTGTTTTTGATTAAGGGATTAGAGAGGACCGGACCG
ATGGTGGCGACGATTGCGGATTTCGATGATAAGGAGGGTATGGTGGAGTT
GGAGTGGATGGCGCCGGTAGGGTTGGAGGGGGCTAGCAACAGCGGGAATG
AGCAGAAGTATTACTTGACAGCTAGCGTGGGGAACCTCCCGGCGTTGTTC
GCAAATTCACAGGCGTTTACGATAGTGCCGGTGGCTTCTGCTGCACGTAA
AGAGCGACGTATGTGAGAAATGACGAATAATGTGAATACGATTATAGTAA
CAAATAGATTGAGATCGTGGAGGAAGGAATAAATTGCCAAAGGAATTGCA
GGGACGCTGACATGAAGAATCACTGAGATTGACAAATATCCCGCACAGTG
AACGTGCGCTACGTCACCAAAAGATAAAATAAGACAAAAAGTCCGTGGGA
AGTTTTCAGAAGCCAAATGTCGACAACAAAAAGCAACCAAAGTACTACTG
CAATTAA

protein sequence of jgi.p|Nanoce1779_2|579456

>mRNA_2202-protein ID=mRNA_2202-protein|Name=jgi.p|Nanoce1779_2|579456|organism=Nannochloropsis oceanica|type=polypeptide|length=718bp
MFVGGGVLVTAGYSHISVNGAVMRGGFGLFSVGGGLHLQTGYLQSRAWGV
GSMNVAGQTFSVGGGIHQMIGGAIATTSIANVFFGAGGTTFVGSGQQRWI
GVVQARSAVAQTQYGAGLFMYNGAGTVIVAYVTQVSAQVARAQFGVGNDI
FLGAGWLSNVNTTRYGAQVVNAFFGEGNQIYVGAGGAVIIRCFTITFRGY
GFSTTKNLYTIAGTGVSRTQALKNVVVTKAGQTLLPWQQSPRPKRRDLEN
EVGGEEDSEVEIGVFDSARNAYMDGEGKSKLIVIQSMLEEGKQVVIEDAT
PFEAKELKHYWGGLAQILADGAVTRGRGKVLNTTKGMIYVNNTNCFVCSV
GPGTSAEHMTGPSSCVVSDACSEAETPAAAFASAKEAANVAAAEAEGDDV
KPFDLSFPGMGAGSLHRELTEREIELPDVWMLWHEMTVYCRTTDPSLDTQ
GIIDEGCVSENYVKDIVRGYLGPTYAQDDYQLAVASANVHDAIKALVEEP
LAAAMTPEWNADCEGWTKFNIYITASDPVIEEALTEEWEAIVDNPLDFQI
TLLQNYDATAKITPCSLSIKRVGTAKYPSLQNMKGFKPLKNGMSLIGPSL
TVAAEAAIVPVTELVEGQTYKLYVQNFMKSSQVNVFLIKGLERTGPMVAT
IADFDDKEGMVELEWMAPVGLEGASNSGNEQKYYLTASVGNLPALFANSQ
AFTIVPVASAARKERRM*

mRNA from alignment at scaffold_4:1049707..1052390+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2202 ID=mRNA_2202|Name=jgi.p|Nanoce1779_2|579456|organism=Nannochloropsis oceanica|type=mRNA|length=2684bp|location=Sequence derived from alignment at scaffold_4:1049707..1052390+ (Nannochloropsis oceanica)
GGGCGGGGGGCGCGGGGTGTCATGCGACCGGTGTACAGGCGCAGTGGGGC
GCAGGTAGGAGCGTTAAAAAGGGACGGGTCCGTGGTTGTATTGGTCGATC
TATGAATGGTGGGGGCCTGGTCAAGCGGCTGCGATGTGTGCTCATCCTCA
CTTGTCTTTTGCTGGCCTGGCGTGACCTGCTCTGCTCCCACTGAGTTCCC
AACCCTTCGAGTCAAGTCCTTCATAGTTCTCGATGCCCACCTGACATCCT
CCTCCTTCGCGCCCTTCCTCCTTCCAAACAGGCCTACAGATGTTCGTTGG
GGGCGGTGTCCTGGTCACTGCAGGGTACAGCCACATATCGGTGAACGGGG
CGGTTATGCGCGGGGGCTTCGGTCTCTTCTCTGTTGGTGGTGGGCTGCAC
TTACAAACAGGATACCTCCAATCCCGGGCGTGGGGTGTTGGTTCCATGAA
CGTGGCTGGTCAGACATTTTCCGTCGGCGGCGGAATTCATCAAATGATTG
GGGGAGCCATCGCCACCACCAGTATTGCTAACGTGTTTTTCGGGGCCGGT
GGGACGACCTTTGTAGGCTCGGGACAGCAGCGCTGGATTGGTGTGGTGCA
AGCTCGCTCGGCGGTGGCTCAAACGCAGTATGGTGCTGGTCTTTTCATGT
ATAATGGGGCGGGAACAGTTATCGTTGCTTATGTCACACAGGTCAGTGCG
CAAGTGGCCCGCGCGCAATTTGGCGTGGGGAATGACATCTTTTTGGGGGC
TGGATGGTTGTCGAATGTGAATACCACAAGGTATGGGGCTCAAGTTGTGA
ATGCTTTTTTCGGGGAAGGAAACCAAATCTATGTTGGGGCTGGTGGCGCG
GTAATCATTAGGTGTTTCACCATAACCTTCCGCGGATATGGCTTCTCGAC
GACGAAAAATTTGTACACGATTGCGGGGACGGGCGTGTCACGCACGCAAG
CGCTGAAGAATGTGGTAGTAACGAAGGCGGGACAAACACTATTGCCCTGG
CAGCAATCACCCCGGCCCAAGCGGAGAGACCTCGAGAATGAGGTGGGTGG
AGAGGAAGATTCAGAGGTTGAGATTGGGGTGTTTGATAGTGCGCGAAATG
CTTATATGGATGGGGAGGGCAAGAGTAAGTTGATTGTGATTCAATCGATG
TTGGAGGAAGGGAAGCAGGTTGTGATTGAGGACGCGACACCCTTTGAGGC
CAAGGAGCTGAAGCACTACTGGGGGGGGTTAGCGCAAATATTGGCCGATG
GTGCGGTGACACGGGGAAGGGGGAAAGTGCTGAACACGACCAAAGGGATG
ATTTATGTGAATAACACGAATTGTTTTGTTTGTTCCGTAGGACCGGGCAC
TTCGGCTGAGCATATGACAGGACCGTCTTCATGTGTGGTTTCTGATGCGT
GTTCAGAGGCGGAGACGCCTGCGGCGGCATTTGCTTCAGCGAAGGAAGCA
GCAAATGTCGCAGCTGCAGAAGCAGAAGGTGATGACGTGAAGCCTTTTGA
CCTGTCTTTTCCCGGGATGGGTGCTGGAAGTTTGCATAGAGAGTTGACAG
AGAGGGAGATTGAGTTACCGGACGTCTGGATGCTATGGCATGAGATGACT
GTGTATTGCCGCACGACTGATCCGAGTCTCGATACGCAGGGCATAATCGA
TGAGGGCTGTGTGAGCGAGAATTATGTCAAGGATATTGTACGGGGCTATC
TCGGACCGACATACGCACAGGATGATTACCAGCTGGCCGTGGCTTCTGCA
AATGTGCATGATGCGATCAAAGCGCTAGTAGAGGAGCCACTGGCGGCCGC
TATGACTCCGGAATGGAACGCAGACTGTGAGGGCTGGACAAAATTCAACA
TATATATTACGGCATCTGACCCCGTGATAGAGGAGGCATTGACGGAGGAA
TGGGAGGCAATTGTCGATAACCCCTTGGACTTCCAGATAACGCTGCTGCA
GAATTACGATGCCACAGCGAAGATCACGCCTTGCTCTCTGTCTATCAAGC
GGGTTGGTACGGCTAAGTACCCTAGCCTTCAAAATATGAAGGGCTTCAAG
CCCCTGAAGAACGGAATGTCTCTGATTGGTCCCAGCTTGACGGTGGCTGC
CGAAGCAGCCATTGTGCCCGTGACTGAGCTGGTCGAAGGGCAGACTTACA
AGCTGTATGTCCAGAACTTTATGAAGAGCAGTCAGGTTAATGTGTTTTTG
ATTAAGGGATTAGAGAGGACCGGACCGATGGTGGCGACGATTGCGGATTT
CGATGATAAGGAGGGTATGGTGGAGTTGGAGTGGATGGCGCCGGTAGGGT
TGGAGGGGGCTAGCAACAGCGGGAATGAGCAGAAGTATTACTTGACAGCT
AGCGTGGGGAACCTCCCGGCGTTGTTCGCAAATTCACAGGCGTTTACGAT
AGTGCCGGTGGCTTCTGCTGCACGTAAAGAGCGACGTATGTGAGAAATGA
CGAATAATGTGAATACGATTATAGTAACAAATAGATTGAGATCGTGGAGG
AAGGAATAAATTGCCAAAGGAATTGCAGGGACGCTGACATGAAGAATCAC
TGAGATTGACAAATATCCCGCACAGTGAACGTGCGCTACGTCACCAAAAG
ATAAAATAAGACAAAAAGTCCGTGGGAAGTTTTCAGAAGCCAAATGTCGA
CAACAAAAAGCAACCAAAGTACTACTGCAATTAA

Coding sequence (CDS) from alignment at scaffold_4:1049707..1052390+

>mRNA_2202 ID=mRNA_2202|Name=jgi.p|Nanoce1779_2|579456|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_4:1049707..1052390+ (Nannochloropsis oceanica)
ATGTTCGTTGGGGGCGGTGTCCTGGTCACTGCAGGGTACAGCCACATATC
GGTGAACGGGGCGGTTATGCGCGGGGGCTTCGGTCTCTTCTCTGTTGGTG
GTGGGCTGCACTTACAAACAGGATACCTCCAATCCCGGGCGTGGGGTGTT
GGTTCCATGAACGTGGCTGGTCAGACATTTTCCGTCGGCGGCGGAATTCA
TCAAATGATTGGGGGAGCCATCGCCACCACCAGTATTGCTAACGTGTTTT
TCGGGGCCGGTGGGACGACCTTTGTAGGCTCGGGACAGCAGCGCTGGATT
GGTGTGGTGCAAGCTCGCTCGGCGGTGGCTCAAACGCAGTATGGTGCTGG
TCTTTTCATGTATAATGGGGCGGGAACAGTTATCGTTGCTTATGTCACAC
AGGTCAGTGCGCAAGTGGCCCGCGCGCAATTTGGCGTGGGGAATGACATC
TTTTTGGGGGCTGGATGGTTGTCGAATGTGAATACCACAAGGTATGGGGC
TCAAGTTGTGAATGCTTTTTTCGGGGAAGGAAACCAAATCTATGTTGGGG
CTGGTGGCGCGGTAATCATTAGGTGTTTCACCATAACCTTCCGCGGATAT
GGCTTCTCGACGACGAAAAATTTGTACACGATTGCGGGGACGGGCGTGTC
ACGCACGCAAGCGCTGAAGAATGTGGTAGTAACGAAGGCGGGACAAACAC
TATTGCCCTGGCAGCAATCACCCCGGCCCAAGCGGAGAGACCTCGAGAAT
GAGGTGGGTGGAGAGGAAGATTCAGAGGTTGAGATTGGGGTGTTTGATAG
TGCGCGAAATGCTTATATGGATGGGGAGGGCAAGAGTAAGTTGATTGTGA
TTCAATCGATGTTGGAGGAAGGGAAGCAGGTTGTGATTGAGGACGCGACA
CCCTTTGAGGCCAAGGAGCTGAAGCACTACTGGGGGGGGTTAGCGCAAAT
ATTGGCCGATGGTGCGGTGACACGGGGAAGGGGGAAAGTGCTGAACACGA
CCAAAGGGATGATTTATGTGAATAACACGAATTGTTTTGTTTGTTCCGTA
GGACCGGGCACTTCGGCTGAGCATATGACAGGACCGTCTTCATGTGTGGT
TTCTGATGCGTGTTCAGAGGCGGAGACGCCTGCGGCGGCATTTGCTTCAG
CGAAGGAAGCAGCAAATGTCGCAGCTGCAGAAGCAGAAGGTGATGACGTG
AAGCCTTTTGACCTGTCTTTTCCCGGGATGGGTGCTGGAAGTTTGCATAG
AGAGTTGACAGAGAGGGAGATTGAGTTACCGGACGTCTGGATGCTATGGC
ATGAGATGACTGTGTATTGCCGCACGACTGATCCGAGTCTCGATACGCAG
GGCATAATCGATGAGGGCTGTGTGAGCGAGAATTATGTCAAGGATATTGT
ACGGGGCTATCTCGGACCGACATACGCACAGGATGATTACCAGCTGGCCG
TGGCTTCTGCAAATGTGCATGATGCGATCAAAGCGCTAGTAGAGGAGCCA
CTGGCGGCCGCTATGACTCCGGAATGGAACGCAGACTGTGAGGGCTGGAC
AAAATTCAACATATATATTACGGCATCTGACCCCGTGATAGAGGAGGCAT
TGACGGAGGAATGGGAGGCAATTGTCGATAACCCCTTGGACTTCCAGATA
ACGCTGCTGCAGAATTACGATGCCACAGCGAAGATCACGCCTTGCTCTCT
GTCTATCAAGCGGGTTGGTACGGCTAAGTACCCTAGCCTTCAAAATATGA
AGGGCTTCAAGCCCCTGAAGAACGGAATGTCTCTGATTGGTCCCAGCTTG
ACGGTGGCTGCCGAAGCAGCCATTGTGCCCGTGACTGAGCTGGTCGAAGG
GCAGACTTACAAGCTGTATGTCCAGAACTTTATGAAGAGCAGTCAGGTTA
ATGTGTTTTTGATTAAGGGATTAGAGAGGACCGGACCGATGGTGGCGACG
ATTGCGGATTTCGATGATAAGGAGGGTATGGTGGAGTTGGAGTGGATGGC
GCCGGTAGGGTTGGAGGGGGCTAGCAACAGCGGGAATGAGCAGAAGTATT
ACTTGACAGCTAGCGTGGGGAACCTCCCGGCGTTGTTCGCAAATTCACAG
GCGTTTACGATAGTGCCGGTGGCTTCTGCTGCACGTAAAGAGCGACGTAT
GTGA

Synonyms

Publications