jgi.p|Nanoce1779_2|296408, mRNA_2201 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|296408
Unique NamemRNA_2201
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length583
Alignment locationscaffold_4:1049393..1049975 +

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Properties
Property NameValue
TranscriptId296494
TrackFilteredModels2
ProteinId296408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1049393..1049975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296408gene_2201Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296408mRNA_2201-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2201CDS_2201Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2201 ID=mRNA_2201|Name=jgi.p|Nanoce1779_2|296408|organism=Nannochloropsis oceanica|type=mRNA|length=583bp
ATGCCTTTTCCTGGCCCAGCGCCAGACAGTCGAATCATTCTTGAGTGAGT
TGCCTAAGATGTTCACGCATCGTAGGCGTCTGTACGGCGGCGTCATCTTT
GTCGCCGGCGGACAACTTTATCTGCAGGGATGTACCTTCATTCGGTTTCG
GCCCTTGGGAAATCCCTTTTTGAACAGTGTGCAAATTGGACGAGATATTT
TGATTATTGCGGGCAATATGGCTTTGTCGGGTGTTTATAACCTGAACGTT
AATCTATTCGCGAACAACGTGATTTTGGGCAATATACTGGCAGTCCTGGG
GGGCACCGCGGTGTGGGCGGGGGGCGCGGGGTGTCATGCGACCGGTGTAC
AGGCGCAGTGGGGCGCAGGTAGGAGCGTTAAAAAGGGACGGGTCCGTGGT
TGTATTGGTCGATCTATGAATGGTGGGGGCCTGGTCAAGCGGCTGCGATG
TGTGCTCATCCTCACTTGTCTTTTGCTGGCCTGGCGTGACCTGCTCTGCT
CCCACTGAGTTCCCAACCCTTCGAGTCAAGTCCTTCATAGTTCTCGATGC
CCACCTGACATCCTCCTCCTTCGCGCCCTTCCT
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protein sequence of jgi.p|Nanoce1779_2|296408

>mRNA_2201-protein ID=mRNA_2201-protein|Name=jgi.p|Nanoce1779_2|296408|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MFTHRRRLYGGVIFVAGGQLYLQGCTFIRFRPLGNPFLNSVQIGRDILII
AGNMALSGVYNLNVNLFANNVILGNILAVLGGTAVWAGGAGCHATGVQAQ
WGAGRSVKKGRVRGCIGRSMNGGGLVKRLRCVLILTCLLLAWRDLLCSH*
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mRNA from alignment at scaffold_4:1049393..1049975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2201 ID=mRNA_2201|Name=jgi.p|Nanoce1779_2|296408|organism=Nannochloropsis oceanica|type=mRNA|length=583bp|location=Sequence derived from alignment at scaffold_4:1049393..1049975+ (Nannochloropsis oceanica)
ATGCCTTTTCCTGGCCCAGCGCCAGACAGTCGAATCATTCTTGAGTGAGT
TGCCTAAGATGTTCACGCATCGTAGGCGTCTGTACGGCGGCGTCATCTTT
GTCGCCGGCGGACAACTTTATCTGCAGGGATGTACCTTCATTCGGTTTCG
GCCCTTGGGAAATCCCTTTTTGAACAGTGTGCAAATTGGACGAGATATTT
TGATTATTGCGGGCAATATGGCTTTGTCGGGTGTTTATAACCTGAACGTT
AATCTATTCGCGAACAACGTGATTTTGGGCAATATACTGGCAGTCCTGGG
GGGCACCGCGGTGTGGGCGGGGGGCGCGGGGTGTCATGCGACCGGTGTAC
AGGCGCAGTGGGGCGCAGGTAGGAGCGTTAAAAAGGGACGGGTCCGTGGT
TGTATTGGTCGATCTATGAATGGTGGGGGCCTGGTCAAGCGGCTGCGATG
TGTGCTCATCCTCACTTGTCTTTTGCTGGCCTGGCGTGACCTGCTCTGCT
CCCACTGAGTTCCCAACCCTTCGAGTCAAGTCCTTCATAGTTCTCGATGC
CCACCTGACATCCTCCTCCTTCGCGCCCTTCCT
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Coding sequence (CDS) from alignment at scaffold_4:1049393..1049975+

>mRNA_2201 ID=mRNA_2201|Name=jgi.p|Nanoce1779_2|296408|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_4:1049393..1049975+ (Nannochloropsis oceanica)
ATGTTCACGCATCGTAGGCGTCTGTACGGCGGCGTCATCTTTGTCGCCGG
CGGACAACTTTATCTGCAGGGATGTACCTTCATTCGGTTTCGGCCCTTGG
GAAATCCCTTTTTGAACAGTGTGCAAATTGGACGAGATATTTTGATTATT
GCGGGCAATATGGCTTTGTCGGGTGTTTATAACCTGAACGTTAATCTATT
CGCGAACAACGTGATTTTGGGCAATATACTGGCAGTCCTGGGGGGCACCG
CGGTGTGGGCGGGGGGCGCGGGGTGTCATGCGACCGGTGTACAGGCGCAG
TGGGGCGCAGGTAGGAGCGTTAAAAAGGGACGGGTCCGTGGTTGTATTGG
TCGATCTATGAATGGTGGGGGCCTGGTCAAGCGGCTGCGATGTGTGCTCA
TCCTCACTTGTCTTTTGCTGGCCTGGCGTGACCTGCTCTGCTCCCACTGA
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Synonyms
Publications