jgi.p|Nanoce1779_2|579455, mRNA_2200 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579455
Unique NamemRNA_2200
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length845
Alignment locationscaffold_4:1048218..1049706 -

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Properties
Property NameValue
TranscriptId579541
TrackFilteredModels2
ProteinId579455
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1048218..1049706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579455gene_2200Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2200CDS_2200Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579455mRNA_2200-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2200 ID=mRNA_2200|Name=jgi.p|Nanoce1779_2|579455|organism=Nannochloropsis oceanica|type=mRNA|length=845bp
ACACCGCGGTGCCCCCCAGGACTGCCAGTATATTGCCCAAAATCACGTTG
TTCGCGAATAGATTAACGTTCAGGTTATAAACACCCGACAAAGCCATATT
GCCCGCAATAATCAAAATATCTCGTCCAATTTGCACACTGTTCAAAAAGG
GATTTCCCAAGGGCCGAAACCGAATGAAGGTACATCCCTGCAGATAAAGT
TGTCCGCCGGCGACAAAGATGACGCCGCCGTACAGACGCCTACGATGCGT
GAACATCTTAGGCAACTCACTCAAGAATGATTCGACTGTCTGGCGCTGGG
CCAGGAAAAGGCATATGGACGACACCGAACCAGGTGGGGCGATATCACCC
ACTGCTTTGTTTCCAACCAGCATGTCTTTGATCCCACCGAACATATTTCC
GAGGACGGAGCCTGAAGCGCTACTGCTACTGCTGCTGCCGCTGCTGCTGC
TACTGCCCTTTTGGGTGTCATTGAATGAATTTCCCATCCCTGCCATGCTG
CTCGCCTCATTCATTGCCCCCGGCATTGCTGCGGGGTCGAGTGCTGGGAA
TGTGTTGTGGACCGACAAGGACTCCAAGATGTTATCGAACATGACTTGGG
TGTTATGGTTGTCCGTGGAGGCCGGCGACGGCGGCGCGGACTTGCTTGGC
CGGCTCGAGCCCAAAGCCCCGGCGATGATGGCACCCGTCACCATCATGCA
ACCAGCCACAGCAAATGCCACGCGATACCGTCTTCTGCCTCTCTTTTCGG
TGCTGCGATTCTCCACTCTCCCTGCCACGGCCGTCGCTGCCCCCGTGGTG
GGCGCGGGCGTGGGAGCCATGGGAGCCACTTGCTTGCGCCTCCTG
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protein sequence of jgi.p|Nanoce1779_2|579455

>mRNA_2200-protein ID=mRNA_2200-protein|Name=jgi.p|Nanoce1779_2|579455|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MDDTEPGGAISPTALFPTSMSLIPPNIFPRTEPEALLLLLLPLLLLLPFW
VSLNEFPIPAMLLASFIAPGIAAGSSAGNVLWTDKDSKMLSNMTWVLWLS
VEAGDGGADLLGRLEPKAPAMMAPVTIMQPATANATRYRLLPLFSVLRFS
TLPATAVAAPVVGAGVGAMGATCLRLL
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mRNA from alignment at scaffold_4:1048218..1049706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2200 ID=mRNA_2200|Name=jgi.p|Nanoce1779_2|579455|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at scaffold_4:1048218..1049706- (Nannochloropsis oceanica)
ACACCGCGGTGCCCCCCAGGACTGCCAGTATATTGCCCAAAATCACGTTG
TTCGCGAATAGATTAACGTTCAGGTTATAAACACCCGACAAAGCCATATT
GCCCGCAATAATCAAAATATCTCGTCCAATTTGCACACTGTTCAAAAAGG
GATTTCCCAAGGGCCGAAACCGAATGAAGGTACATCCCTGCAGATAAAGT
TGTCCGCCGGCGACAAAGATGACGCCGCCGTACAGACGCCTACGATGCGT
GAACATCTTAGGCAACTCACTCAAGAATGATTCGACTGTCTGGCGCTGGG
CCAGGAAAAGGCATCTGATGAGAGAAGGAGGAAGGGAGGAGGGGAAGAAA
GGGAGAGGTTGAATGAGGTGATGGTTGGAACAGCGTCATGTTCTGAGACA
AGATATTTCATCAGATAGGAGAGCAGAACCCTAGGATCATACTATGATAT
AAACCACACAAGTGCATCAAATACTTACATTCGTCCTCTCCTCCATCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCCTC
CCGCCCGCCCTTCCTCCTTTCCATTCGTCTTACCCCGTCGCAGTAAACGA
GCCCCCGAAATCCACGTAGGTTACCCCACCGACAGTCACCGTCGATCTTC
CATCCTTCGAAGTCCATCCAGCGCCTCGATACAAAGAGGCAAAACGGACG
TCGAGCCTCCCCCCCGGATATACGCGGAACAGACGCTCAATCTTGTTGGT
CGCATTTAAAACGGGCAAATCAATCGGATTGCCGACAATGATCTTGGAAG
TGGTAATATTCATCATCTGAGGAATGTGGTACGGGTCTGTGTTGGAGCGC
GTCAAGACAATGATGGTGCAGGGACTCTTGCCCTCGCTCATGCTCACGAC
CTCCGTCCCATTCTTGGGGTAGCAGATAACGTTTCCCGCACCCAGGCGTC
CCCACCCTATGGACGACACCGAACCAGGTGGGGCGATATCACCCACTGCT
TTGTTTCCAACCAGCATGTCTTTGATCCCACCGAACATATTTCCGAGGAC
GGAGCCTGAAGCGCTACTGCTACTGCTGCTGCCGCTGCTGCTGCTACTGC
CCTTTTGGGTGTCATTGAATGAATTTCCCATCCCTGCCATGCTGCTCGCC
TCATTCATTGCCCCCGGCATTGCTGCGGGGTCGAGTGCTGGGAATGTGTT
GTGGACCGACAAGGACTCCAAGATGTTATCGAACATGACTTGGGTGTTAT
GGTTGTCCGTGGAGGCCGGCGACGGCGGCGCGGACTTGCTTGGCCGGCTC
GAGCCCAAAGCCCCGGCGATGATGGCACCCGTCACCATCATGCAACCAGC
CACAGCAAATGCCACGCGATACCGTCTTCTGCCTCTCTTTTCGGTGCTGC
GATTCTCCACTCTCCCTGCCACGGCCGTCGCTGCCCCCGTGGTGGGCGCG
GGCGTGGGAGCCATGGGAGCCACTTGCTTGCGCCTCCTG
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Coding sequence (CDS) from alignment at scaffold_4:1048218..1049706-

>mRNA_2200 ID=mRNA_2200|Name=jgi.p|Nanoce1779_2|579455|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_4:1048218..1049706- (Nannochloropsis oceanica)
ATGGACGACACCGAACCAGGTGGGGCGATATCACCCACTGCTTTGTTTCC
AACCAGCATGTCTTTGATCCCACCGAACATATTTCCGAGGACGGAGCCTG
AAGCGCTACTGCTACTGCTGCTGCCGCTGCTGCTGCTACTGCCCTTTTGG
GTGTCATTGAATGAATTTCCCATCCCTGCCATGCTGCTCGCCTCATTCAT
TGCCCCCGGCATTGCTGCGGGGTCGAGTGCTGGGAATGTGTTGTGGACCG
ACAAGGACTCCAAGATGTTATCGAACATGACTTGGGTGTTATGGTTGTCC
GTGGAGGCCGGCGACGGCGGCGCGGACTTGCTTGGCCGGCTCGAGCCCAA
AGCCCCGGCGATGATGGCACCCGTCACCATCATGCAACCAGCCACAGCAA
ATGCCACGCGATACCGTCTTCTGCCTCTCTTTTCGGTGCTGCGATTCTCC
ACTCTCCCTGCCACGGCCGTCGCTGCCCCCGTGGTGGGCGCGGGCGTGGG
AGCCATGGGAGCCACTTGCTTGCGCCTCCTG
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Synonyms
Publications