jgi.p|Nanoce1779_2|296287, mRNA_2199 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|296287
Unique NamemRNA_2199
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_4:1046700..1047690 -

Link to JBrowse

Properties
Property NameValue
TranscriptId296373
TrackFilteredModels2
ProteinId296287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1046700..1047690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296287gene_2199Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296287mRNA_2199-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2199CDS_2199Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2199 ID=mRNA_2199|Name=jgi.p|Nanoce1779_2|296287|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
TGACCCCCCAACTTGTTGAACAGGACAACGAGCACATGAGACGACTTTCG
ATCAATTGATCCCACCCTTACTACAAACAGCGTGCCCTTACTCAATTTTA
CCCACCATTATCCTCAATGCCCAGATTCAAAGCAACCAAGGATGCGGTCG
CCTGTTTCCCACCGTATGGTACTCTGTTGCCTGCTCGCCTTTGTAGTCGG
CCCGGCTACGGCCAACAAGAAGACGGGCCTCTTTCAGCGCTTGACCCAGG
CCCTGCAAAGCGACGGCAGCAATGCGCAAGAGGAACTGAATGCGGCAGTG
TCGGGCCTCACCGATACGGGTTTACCTGACGCGCCCTTCCTGCAAGACAC
CTGGGCGCAAGATGATGACGGCCTCTCGCTTATCAAACCTGCCTTTGATG
GTGACGTTCTATCCGTCTTCCGTACCTTGACCGAGAATTACAAGGACCAA
TTACAAGAAATCTGGGGCCAGCCAGAGGTGGCCAAGGCGTTGTTGACCAA
CTTCCCCATGTTTAGTGGTATTAAGGGCATGGCAAGCATTGCACAGAAGG
AAGGGCCTTTGACGTCTGCGGACGTACGTCGGGAGGGAAGGATGGAGAGA
TGTGGATTAAGAGATGAGATAGGGAGTTGGAATGGAGATATATGAAGGCA
TTATGCCATGTGCTAAATGTGTCATCATATACCTCCCTTTGCATCGAGTA
ATGACCTCAGTACCTCTTTTCCTCCCATCTCTGCCAGCTCACTTCCCATT
TTCTGCCCTCCTTTCTTCCCATCCAAAAAGGGTCTCTCGGCCCTGAGCGC
TTTCACAGACTACCTCGCCGCCACTGCCCGCGTCTTGGAAGAGGTCGTGG
ACCCCGGCAAATTCGCGGCAAAAATGCAAACGTATCAATCACTGAAAGAC
CCCGTGCTGAAAGACTTGGTGGCACGGACCGAGAAGGGAGATGTGGAGGC
AACGCTGGCGTTGCAGCAAGAGATTGTGAATAGGGAGCTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|296287

>mRNA_2199-protein ID=mRNA_2199-protein|Name=jgi.p|Nanoce1779_2|296287|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MRSPVSHRMVLCCLLAFVVGPATANKKTGLFQRLTQALQSDGSNAQEELN
AAVSGLTDTGLPDAPFLQDTWAQDDDGLSLIKPAFDGDVLSVFRTLTENY
KDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPLTSADVRREGR
MERCGLRDEIGSWNGDI*
back to top

mRNA from alignment at scaffold_4:1046700..1047690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2199 ID=mRNA_2199|Name=jgi.p|Nanoce1779_2|296287|organism=Nannochloropsis oceanica|type=mRNA|length=991bp|location=Sequence derived from alignment at scaffold_4:1046700..1047690- (Nannochloropsis oceanica)
TGACCCCCCAACTTGTTGAACAGGACAACGAGCACATGAGACGACTTTCG
ATCAATTGATCCCACCCTTACTACAAACAGCGTGCCCTTACTCAATTTTA
CCCACCATTATCCTCAATGCCCAGATTCAAAGCAACCAAGGATGCGGTCG
CCTGTTTCCCACCGTATGGTACTCTGTTGCCTGCTCGCCTTTGTAGTCGG
CCCGGCTACGGCCAACAAGAAGACGGGCCTCTTTCAGCGCTTGACCCAGG
CCCTGCAAAGCGACGGCAGCAATGCGCAAGAGGAACTGAATGCGGCAGTG
TCGGGCCTCACCGATACGGGTTTACCTGACGCGCCCTTCCTGCAAGACAC
CTGGGCGCAAGATGATGACGGCCTCTCGCTTATCAAACCTGCCTTTGATG
GTGACGTTCTATCCGTCTTCCGTACCTTGACCGAGAATTACAAGGACCAA
TTACAAGAAATCTGGGGCCAGCCAGAGGTGGCCAAGGCGTTGTTGACCAA
CTTCCCCATGTTTAGTGGTATTAAGGGCATGGCAAGCATTGCACAGAAGG
AAGGGCCTTTGACGTCTGCGGACGTACGTCGGGAGGGAAGGATGGAGAGA
TGTGGATTAAGAGATGAGATAGGGAGTTGGAATGGAGATATATGAAGGCA
TTATGCCATGTGCTAAATGTGTCATCATATACCTCCCTTTGCATCGAGTA
ATGACCTCAGTACCTCTTTTCCTCCCATCTCTGCCAGCTCACTTCCCATT
TTCTGCCCTCCTTTCTTCCCATCCAAAAAGGGTCTCTCGGCCCTGAGCGC
TTTCACAGACTACCTCGCCGCCACTGCCCGCGTCTTGGAAGAGGTCGTGG
ACCCCGGCAAATTCGCGGCAAAAATGCAAACGTATCAATCACTGAAAGAC
CCCGTGCTGAAAGACTTGGTGGCACGGACCGAGAAGGGAGATGTGGAGGC
AACGCTGGCGTTGCAGCAAGAGATTGTGAATAGGGAGCTGG
back to top

Coding sequence (CDS) from alignment at scaffold_4:1046700..1047690-

>mRNA_2199 ID=mRNA_2199|Name=jgi.p|Nanoce1779_2|296287|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_4:1046700..1047690- (Nannochloropsis oceanica)
ATGCGGTCGCCTGTTTCCCACCGTATGGTACTCTGTTGCCTGCTCGCCTT
TGTAGTCGGCCCGGCTACGGCCAACAAGAAGACGGGCCTCTTTCAGCGCT
TGACCCAGGCCCTGCAAAGCGACGGCAGCAATGCGCAAGAGGAACTGAAT
GCGGCAGTGTCGGGCCTCACCGATACGGGTTTACCTGACGCGCCCTTCCT
GCAAGACACCTGGGCGCAAGATGATGACGGCCTCTCGCTTATCAAACCTG
CCTTTGATGGTGACGTTCTATCCGTCTTCCGTACCTTGACCGAGAATTAC
AAGGACCAATTACAAGAAATCTGGGGCCAGCCAGAGGTGGCCAAGGCGTT
GTTGACCAACTTCCCCATGTTTAGTGGTATTAAGGGCATGGCAAGCATTG
CACAGAAGGAAGGGCCTTTGACGTCTGCGGACGTACGTCGGGAGGGAAGG
ATGGAGAGATGTGGATTAAGAGATGAGATAGGGAGTTGGAATGGAGATAT
ATGA
back to top
Synonyms
Publications