jgi.p|Nanoce1779_2|579437, mRNA_2196 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579437
Unique NamemRNA_2196
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1172
Alignment locationscaffold_4:1035991..1037162 +

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Properties
Property NameValue
TranscriptId579523
TrackFilteredModels2
ProteinId579437
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1035991..1037162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579437gene_2196Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579437mRNA_2196-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2196CDS_2196Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2196 ID=mRNA_2196|Name=jgi.p|Nanoce1779_2|579437|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
ACAGGCAGAAGGCTGACTCGCCCCCCTCTCATCCACGTTTGTCGCGGGCG
CTTTCATCATCGACCATCAACAGCAACAACTGAGGGCCTGCTCTCCCTTG
AAGCAAGCCACGTGCCTGAAACCATGACGAGCATCAATCGAGTCCAGGCC
TCCCTGCAGCTCCTCCTCCTGGTAGCAGTTACCAGCACCAGTGCCCTGGG
CAGTAGTAGAACTACCACAGCTTTTATCCCACCCCGGCCACGCTCCTTTT
CCCCTTCCTCTGCCCTTTCCCTCTCAATCAAATCCCGAACCCTCACCCCT
CCAAGACATGCACTATCGACACCACCCCCTCAAGCAGCCTGGAGACCCTT
CCCCACTTGTTCGCATGCCCTTCCCTCCAACCTTCTCCAGGATCTGAGTG
GGGCAACGTTGGTCGGGATCGCCTCCGCGGTTTGGTTGAAATTGTGGACT
ACCCTGGCAACGTCCGGTAAGGTTGATTCCAAGGACTCTCGCAAACTTAT
CCACTGCGGCTCCGGTCCACTGTTTATGTTGTGTTGGCCCTTTTTCTCCG
CAGACCCCAGCGCCCGCTTTTTCGCTGCAGCGGTGCCTTTGCTCCAAGCC
ATCGCTGTTATCGCTTCGGGCTTGGCAAAGGAGCAGCCAGACGCTCCGAC
CCTCACGAATGCTACTACGATTAAAATGAAGCCCAGTGGTCTCGTCGCTG
CAATCTCCCGAAGCGGCAATCCAGCGGAGGTCCTGCGTGGGCCACTGATA
TACGTCATTGTTCTCCTTCTGTCCACCCTTAGTTTTTGGCGCGAGAGCAT
GGTGGGGCTGGTGGCAATCAGTCAGATGGCAGCAGGGGATGGAATGGCCG
ATATCGTCGGGAGGAGATGGGGAGAGAAAAAGTGGGCGTTCAGTAGTACG
AAAAGTTATGCAGGAACGGGGGCGTTTGTGGTGTCTGGATTCTTGGTGAG
TGTGGGGTTGATTGCCTGGTTTCATTTATGGGGCTTGGTCCCAGCCTTGA
CGCTTGGGGTGGTAGGACGGGTGGGGGTGATTAGTGTGTTGTGTGCGATG
GTGGAGCTGGTGCCCTGGGGGGATGATAATGTGAGTGTCCCCGTGGTCGC
GTCGGTGTTGGCGACGGCTCTGTTGATGTAGTTAAGGGGGGGGCGAGGGA
GAGAAGGAGGGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|579437

>mRNA_2196-protein ID=mRNA_2196-protein|Name=jgi.p|Nanoce1779_2|579437|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MTSINRVQASLQLLLLVAVTSTSALGSSRTTTAFIPPRPRSFSPSSALSL
SIKSRTLTPPRHALSTPPPQAAWRPFPTCSHALPSNLLQDLSGATLVGIA
SAVWLKLWTTLATSGKVDSKDSRKLIHCGSGPLFMLCWPFFSADPSARFF
AAAVPLLQAIAVIASGLAKEQPDAPTLTNATTIKMKPSGLVAAISRSGNP
AEVLRGPLIYVIVLLLSTLSFWRESMVGLVAISQMAAGDGMADIVGRRWG
EKKWAFSSTKSYAGTGAFVVSGFLVSVGLIAWFHLWGLVPALTLGVVGRV
GVISVLCAMVELVPWGDDNVSVPVVASVLATALLM*
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mRNA from alignment at scaffold_4:1035991..1037162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2196 ID=mRNA_2196|Name=jgi.p|Nanoce1779_2|579437|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp|location=Sequence derived from alignment at scaffold_4:1035991..1037162+ (Nannochloropsis oceanica)
ACAGGCAGAAGGCTGACTCGCCCCCCTCTCATCCACGTTTGTCGCGGGCG
CTTTCATCATCGACCATCAACAGCAACAACTGAGGGCCTGCTCTCCCTTG
AAGCAAGCCACGTGCCTGAAACCATGACGAGCATCAATCGAGTCCAGGCC
TCCCTGCAGCTCCTCCTCCTGGTAGCAGTTACCAGCACCAGTGCCCTGGG
CAGTAGTAGAACTACCACAGCTTTTATCCCACCCCGGCCACGCTCCTTTT
CCCCTTCCTCTGCCCTTTCCCTCTCAATCAAATCCCGAACCCTCACCCCT
CCAAGACATGCACTATCGACACCACCCCCTCAAGCAGCCTGGAGACCCTT
CCCCACTTGTTCGCATGCCCTTCCCTCCAACCTTCTCCAGGATCTGAGTG
GGGCAACGTTGGTCGGGATCGCCTCCGCGGTTTGGTTGAAATTGTGGACT
ACCCTGGCAACGTCCGGTAAGGTTGATTCCAAGGACTCTCGCAAACTTAT
CCACTGCGGCTCCGGTCCACTGTTTATGTTGTGTTGGCCCTTTTTCTCCG
CAGACCCCAGCGCCCGCTTTTTCGCTGCAGCGGTGCCTTTGCTCCAAGCC
ATCGCTGTTATCGCTTCGGGCTTGGCAAAGGAGCAGCCAGACGCTCCGAC
CCTCACGAATGCTACTACGATTAAAATGAAGCCCAGTGGTCTCGTCGCTG
CAATCTCCCGAAGCGGCAATCCAGCGGAGGTCCTGCGTGGGCCACTGATA
TACGTCATTGTTCTCCTTCTGTCCACCCTTAGTTTTTGGCGCGAGAGCAT
GGTGGGGCTGGTGGCAATCAGTCAGATGGCAGCAGGGGATGGAATGGCCG
ATATCGTCGGGAGGAGATGGGGAGAGAAAAAGTGGGCGTTCAGTAGTACG
AAAAGTTATGCAGGAACGGGGGCGTTTGTGGTGTCTGGATTCTTGGTGAG
TGTGGGGTTGATTGCCTGGTTTCATTTATGGGGCTTGGTCCCAGCCTTGA
CGCTTGGGGTGGTAGGACGGGTGGGGGTGATTAGTGTGTTGTGTGCGATG
GTGGAGCTGGTGCCCTGGGGGGATGATAATGTGAGTGTCCCCGTGGTCGC
GTCGGTGTTGGCGACGGCTCTGTTGATGTAGTTAAGGGGGGGGCGAGGGA
GAGAAGGAGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_4:1035991..1037162+

>mRNA_2196 ID=mRNA_2196|Name=jgi.p|Nanoce1779_2|579437|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_4:1035991..1037162+ (Nannochloropsis oceanica)
ATGACGAGCATCAATCGAGTCCAGGCCTCCCTGCAGCTCCTCCTCCTGGT
AGCAGTTACCAGCACCAGTGCCCTGGGCAGTAGTAGAACTACCACAGCTT
TTATCCCACCCCGGCCACGCTCCTTTTCCCCTTCCTCTGCCCTTTCCCTC
TCAATCAAATCCCGAACCCTCACCCCTCCAAGACATGCACTATCGACACC
ACCCCCTCAAGCAGCCTGGAGACCCTTCCCCACTTGTTCGCATGCCCTTC
CCTCCAACCTTCTCCAGGATCTGAGTGGGGCAACGTTGGTCGGGATCGCC
TCCGCGGTTTGGTTGAAATTGTGGACTACCCTGGCAACGTCCGGTAAGGT
TGATTCCAAGGACTCTCGCAAACTTATCCACTGCGGCTCCGGTCCACTGT
TTATGTTGTGTTGGCCCTTTTTCTCCGCAGACCCCAGCGCCCGCTTTTTC
GCTGCAGCGGTGCCTTTGCTCCAAGCCATCGCTGTTATCGCTTCGGGCTT
GGCAAAGGAGCAGCCAGACGCTCCGACCCTCACGAATGCTACTACGATTA
AAATGAAGCCCAGTGGTCTCGTCGCTGCAATCTCCCGAAGCGGCAATCCA
GCGGAGGTCCTGCGTGGGCCACTGATATACGTCATTGTTCTCCTTCTGTC
CACCCTTAGTTTTTGGCGCGAGAGCATGGTGGGGCTGGTGGCAATCAGTC
AGATGGCAGCAGGGGATGGAATGGCCGATATCGTCGGGAGGAGATGGGGA
GAGAAAAAGTGGGCGTTCAGTAGTACGAAAAGTTATGCAGGAACGGGGGC
GTTTGTGGTGTCTGGATTCTTGGTGAGTGTGGGGTTGATTGCCTGGTTTC
ATTTATGGGGCTTGGTCCCAGCCTTGACGCTTGGGGTGGTAGGACGGGTG
GGGGTGATTAGTGTGTTGTGTGCGATGGTGGAGCTGGTGCCCTGGGGGGA
TGATAATGTGAGTGTCCCCGTGGTCGCGTCGGTGTTGGCGACGGCTCTGT
TGATGTAG
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Synonyms
Publications