jgi.p|Nanoce1779_2|579432, mRNA_2194 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579432
Unique Name	mRNA_2194
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2419
Alignment location	scaffold_4:1031524..1033942 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579518
Track	FilteredModels2
ProteinId	579432

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1031524..1033942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579432	gene_2194	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579432	mRNA_2194-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2194	CDS_2194	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1031524..1033942+
coding sequence from alignment at scaffold_4:1031524..1033942+

mRNA sequence

>mRNA_2194 ID=mRNA_2194|Name=jgi.p|Nanoce1779_2|579432|organism=Nannochloropsis oceanica|type=mRNA|length=2419bp
CCTGAGGCATGTCACAATCCAATGTATATCCCAGAGCCACAGGAACATGG
CTTGAGTGCCCAATGAGGTGGTTTTGATATTCATTCCCTTGTCCTGCTCC
GGTTGACTTGTCTAGGAGGCTGTGGGGAGAACGTTGAACGCTGAGCGCTT
ACCAAGGCCTGAGGCCCGGCGCTGCTCCTCGTCCTTTTGCTCGTTCAAGT
TGCTACCGCTATCTCCCACTCTTTATACACACGCTACTGAAACACAGGGA
GGCAGCGCGTCAAGGGCCCTCCTAAAAGTGCCTTCCAGAAAAGGTCAGTT
AGCGGCCGAGGTTTCCTCCACCGGCAAGGTGTGTGCTGCAGGCAGCATTC
TAGTATGAGATCCTGATCCTCGGCATATCACACAAGCCGCCATCATGAGC
CCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATTCCTCTC
CTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGACGAAACT
CCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGAGCAGCA
CCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGTTATGCC
GGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTGGAAATC
AAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACGAAAGTG
TTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGAAGGAGC
CGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTCTCACGA
AAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCCACCACT
GACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGATGAAAC
AACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCTGGATAT
CTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAGAGACGC
GAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGACTTGAG
GCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGTTTAGCA
AGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCGTTAATT
GTAACGGTAGGTTTAAATCTGGTATTTTTTATGGGCCAGACTCCGGTACC
GAGCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGGAGGGAGAGGGAGGAA
CTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAATGGGCAAC
GAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTCCTCATCCT
CCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGCTGTGTGTT
GTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGCAGCAGCCT
TATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCTGCCACTGT
GACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGGCAGCACCA
TTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCGTACACGTC
CTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCGTCCACGCA
CTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCTGGAGGAAA
GACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACTCAGCGGCG
CTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGAGGAGCGGGGGA
ATGAGAGAGGGAGGAAGTGACGATGCGCTTTGTATGAGAGTGAGAAGGCG
AGAGAATTTACATATGAGGCTTTGTAAGAAGGTATATGACAGAGATCAAG
CTTGTGATTAATGGACAATGAGATCGAGATGTAGAAGAGTGTGTGCGAAT
GTGAAATGGAAGGTGAGAAAATTTTGAGTGGTTGTAGGAAGAGAGGAAGA
GTAAAGAGATTCAGATGGACCAGAAGAAAGAGGCGAGAGGTAAGAGGAAG
GATGTGAAGTGCACGAACACACAAAAACAGACAATAAGCAACAGCGGGCT
TACAAATCGATGGAGTTTTAGAAAAGACACCACAGGAAGAGATGGTACGA
GAAACAGACAGACAGAGAAAGACAGAGAAAGACCTTAGAGAGAAGCATTA
TTGCGTGCATATCAGACATATTAGTTCCGCGAGAGGCAAGCAGTGGGAAA
GGAGAAACAGCAGAGGGCGGAAACCATGTGTATGTCATATTTGTGAAAAT
TCACCCACGTCGATCAGCGTCGACGAAGAGGGAAACCTGCGTCAATCAGC
GACGATGAAGATAGAAAGAGAGAACGGAAAAAAGACGCATGAGAGAACAA
CTGCAGGGTCACTTGAATA

protein sequence of jgi.p|Nanoce1779_2|579432

>mRNA_2194-protein ID=mRNA_2194-protein|Name=jgi.p|Nanoce1779_2|579432|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MSPPRRRPRLLLAVAVFLSFFIFSLLPIITEAGRNSKSVRRQAGQSRLTR
AAPGGAAAATAHLPFLVMPVKDSSLKPTFDNTAGNQTSSLHSAKNVVPNT
KVLVPSTAGTESLLPYEGAEVVFHRRPPPGVETLTKAEFAELKDEEDDEP
TTDFDGTSGDAPYDGDDETTDGVMALSLLGLVCWISFSALLVACFVQTEK
RREEMLRFWRAIDSNPDLRQAVEQAAGGGAFPKFSKHAGLYRFLRAIAVA
LIVTVGLNLVFFMGQTPVPSAAGGKGDGGGEGEGGTGGRGNISPLDPTGM
GNEGTSDSTPVMGMVVLILLLASTVLLARGLYAVCCSTSSSLPSISCGGQ
QPYPGTVSGNYEPVHPATVTPYISMHGNSSSSGSTISNSSPVQEVYYMGV
HVLPTSTPSLRSSSPSSTHSQQQQQQQQPQQQLEERQEEEIEEGAPPPYS
AALVAAPASTATVV*

mRNA from alignment at scaffold_4:1031524..1033942+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2194 ID=mRNA_2194|Name=jgi.p|Nanoce1779_2|579432|organism=Nannochloropsis oceanica|type=mRNA|length=2419bp|location=Sequence derived from alignment at scaffold_4:1031524..1033942+ (Nannochloropsis oceanica)
CCTGAGGCATGTCACAATCCAATGTATATCCCAGAGCCACAGGAACATGG
CTTGAGTGCCCAATGAGGTGGTTTTGATATTCATTCCCTTGTCCTGCTCC
GGTTGACTTGTCTAGGAGGCTGTGGGGAGAACGTTGAACGCTGAGCGCTT
ACCAAGGCCTGAGGCCCGGCGCTGCTCCTCGTCCTTTTGCTCGTTCAAGT
TGCTACCGCTATCTCCCACTCTTTATACACACGCTACTGAAACACAGGGA
GGCAGCGCGTCAAGGGCCCTCCTAAAAGTGCCTTCCAGAAAAGGTCAGTT
AGCGGCCGAGGTTTCCTCCACCGGCAAGGTGTGTGCTGCAGGCAGCATTC
TAGTATGAGATCCTGATCCTCGGCATATCACACAAGCCGCCATCATGAGC
CCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATTCCTCTC
CTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGACGAAACT
CCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGAGCAGCA
CCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGTTATGCC
GGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTGGAAATC
AAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACGAAAGTG
TTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGAAGGAGC
CGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTCTCACGA
AAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCCACCACT
GACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGATGAAAC
AACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCTGGATAT
CTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAGAGACGC
GAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGACTTGAG
GCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGTTTAGCA
AGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCGTTAATT
GTAACGGTAGGTTTAAATCTGGTATTTTTTATGGGCCAGACTCCGGTACC
GAGCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGGAGGGAGAGGGAGGAA
CTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAATGGGCAAC
GAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTCCTCATCCT
CCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGCTGTGTGTT
GTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGCAGCAGCCT
TATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCTGCCACTGT
GACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGGCAGCACCA
TTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCGTACACGTC
CTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCGTCCACGCA
CTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCTGGAGGAAA
GACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACTCAGCGGCG
CTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGAGGAGCGGGGGA
ATGAGAGAGGGAGGAAGTGACGATGCGCTTTGTATGAGAGTGAGAAGGCG
AGAGAATTTACATATGAGGCTTTGTAAGAAGGTATATGACAGAGATCAAG
CTTGTGATTAATGGACAATGAGATCGAGATGTAGAAGAGTGTGTGCGAAT
GTGAAATGGAAGGTGAGAAAATTTTGAGTGGTTGTAGGAAGAGAGGAAGA
GTAAAGAGATTCAGATGGACCAGAAGAAAGAGGCGAGAGGTAAGAGGAAG
GATGTGAAGTGCACGAACACACAAAAACAGACAATAAGCAACAGCGGGCT
TACAAATCGATGGAGTTTTAGAAAAGACACCACAGGAAGAGATGGTACGA
GAAACAGACAGACAGAGAAAGACAGAGAAAGACCTTAGAGAGAAGCATTA
TTGCGTGCATATCAGACATATTAGTTCCGCGAGAGGCAAGCAGTGGGAAA
GGAGAAACAGCAGAGGGCGGAAACCATGTGTATGTCATATTTGTGAAAAT
TCACCCACGTCGATCAGCGTCGACGAAGAGGGAAACCTGCGTCAATCAGC
GACGATGAAGATAGAAAGAGAGAACGGAAAAAAGACGCATGAGAGAACAA
CTGCAGGGTCACTTGAATA

Coding sequence (CDS) from alignment at scaffold_4:1031524..1033942+

>mRNA_2194 ID=mRNA_2194|Name=jgi.p|Nanoce1779_2|579432|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_4:1031524..1033942+ (Nannochloropsis oceanica)
ATGAGCCCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATT
CCTCTCCTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGAC
GAAACTCCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGA
GCAGCACCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGT
TATGCCGGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTG
GAAATCAAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACG
AAAGTGTTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGA
AGGAGCCGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTC
TCACGAAAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCC
ACCACTGACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGA
TGAAACAACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCT
GGATATCTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAG
AGACGCGAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGA
CTTGAGGCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGT
TTAGCAAGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCG
TTAATTGTAACGGTAGGTTTAAATCTGGTATTTTTTATGGGCCAGACTCC
GGTACCGAGCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGGAGGGAGAGG
GAGGAACTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAATG
GGCAACGAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTCCT
CATCCTCCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGCTG
TGTGTTGTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGCAG
CAGCCTTATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCTGC
CACTGTGACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGGCA
GCACCATTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCGTA
CACGTCCTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCGTC
CACGCACTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCTGG
AGGAAAGACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACTCA
GCGGCGCTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGA

Synonyms

Publications