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Properties
| Property Name | Value |
|---|
| TranscriptId | 552015 |
| Track | FilteredModels2 |
| ProteinId | 551929 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1026764..1030013 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2193 ID=mRNA_2193|Name=jgi.p|Nanoce1779_2|551929|organism=Nannochloropsis oceanica|type=mRNA|length=2917bp
ATGGAGGAGGATGGGGATGGCACCGTGCCATTTGATGAACGCGAATCTGC
CCTTCTGGAGGATGGAGAGGCCTTCCTCGCACGCCGTGGGACTACTCAGC
CCGGGCAAGCCGCCACCTCCGGTTCCCGTGCCACCGGCAAGAAGAAGAAC
GACAACAACGACAAAAACGACAACAAACAAAGCAAAAGGCAACAGCAGCA
GCAAAAGCAGCAGCATCAGAAAAATAAACATCCCTCCGTCGTCCCAAGAC
CCGATTCTGGTGTCTCCTCCCCGTCTACCACCAAGCTCTCTATCCCCCCC
TCCCTCCATCCCTCCCGGCCGGGGGGCTCCTCCTCCTTTGTCTCAGGTGT
GTTCCGCGCCATCGCCCCCGCCGTTCCGCGCGTCGACTGCGTGAAAGTTT
ACAAGGGAGAAATAAAATTCGCCTCCGGTTCGGGCGTTATTTTCACCCCG
GAAGGGTATATGATAACCAATTCTCTTCTTGTGCGGAACGCGTTGGAGTT
GAAGGTGACACTTGCCGACGGTCGAGAATTTCCCGCCGAGGTGAAGGGGG
TGGATGAAGTCCTCGATGTGGCGGTGCTTAAAATCCTTCCTCCCTCCCCC
CCTCCCTCGTCCTCGTCCTCATCCTCGTCCTCGTCCTCGTCCTCATTCCC
TTCCTCTTTTGAATACGCGCCAATCGGAGACTCGGACGCCCTGCAAGTAG
GCGATTGGGTGCTATCGGTGGGTAGCCCTCGTTCCCCCGGCCCTTCCGTC
ATCCTAGGCATTGTTAGTGGCCTCACCAAAACAGCTGCAGAAGTGGGTCG
GCCCGAGACGCAAGTCTCCTTCATCCAAACAGACGCGAGTTTCGATGCAG
GTGTTGTGGGAGGCCCCCTGGTGAACGAGTACGGGGAGGTGGTGGGGATC
AATAGCATCGGGCTCACCACCAGCAACACAGTACAGTTCTCTGTCCCGAT
CAATGAGTTGAAAGTGGCCGTGGAAGAGCTGGCTATGGGGAATGAGGTCC
TGCATCCATCCATTGGGGTGGAGATGATGCCCGTCACTCCCACCCTTGCT
GCTCAGCTGAACCAGAAGGCAGCGGCAAGACAGCGGCAAATCCAGGGGGG
CGCAGTGGTGGTCGTCAACGTTCTAGAAGATTCCCCTGCCCAACAAGCAG
GCCTGCAGCACTTGGACATTCTGCTTGAGATCGATCGATGCCCCATCTAC
AAGGTGGAAGATGCGCAAAGGATCATCCACGCGTCCGGGGTCGGGAGGGA
CATAGAGATAAAGGTACTAAGAAGCACACAGGAAGTCACTGTGCAAGTGA
GGACGACTGATTTTTTGACTCTGTTTCGAAAGCAACAGACGGCCAAAAGG
TACCCTGAGCTGAAGCCAAAGGTGGAGAGGAAGAGGGAGGGATTGAACGA
GGGGGGAAGGGAACAGTTGGAGAGGGAGGGGGACGGGGAAGAGCTGGAGG
AATCGCCGTTGGGAGGGAAGGGGGGGCTGCATCAGCGGTCGGCGAGTAAT
GATGGGAAGGGAGGAAATGAGAGAGGTGAAGAGAGAAAGAAGACGGGGTT
GATGAAACAGAGTAAGAAGGAGGAGAGGCAGATGAGGGAGGAGGAGGGAG
ATAGACAGGCAACAAAAGATAGGGAAGCACCAGATGAGATGCATGGAGAA
TTGTGGACTTAAATTAGGCGATCGCGTCTGTGGTTTTGGAGAAGAGAGAC
ATCGTGAATATATACATATACATGTATTTTCTTACATACAAATCAAATTA
AACCAGACTTGCCCGCAGCAGATAAAACAAATATCCTCATTTTCCCACAA
TCAATGGACCGATTAAAATTTGTTGGAACTTTTTTGTGGTTGCTCTTAGG
TTTAGTGACAAAACAACAGAAACAGAATCACGACACGTAAAATGAAAGGA
ACAACTTTACATAGAGATGAGGATAGCGGATATTTGATCGGAGCTCGGAA
CGAGAGGCAGTCTCTTTGTGGCAGCGCCTTGGCGAAAGCCATTGCGTTCA
TGTCCCATACAGCGAAAGCAAATGCACTAATTTCAACTCCAATGATAAAT
GTATATAGCTCTGCCTTATATTCATTTTCTAATATACTTGCTTGCTTTCC
AAGGCCCTCATGGAGCCCTTTTCTCAACGTCTTCCTGGAAAGCAGAAGGC
GGCGACGACGGTAAATCTGGAATGGTCTGTATGTACCAGAGTAAAAAGAG
ATATGAGATTCAAAAAAGTTTGAAAGCATGAAAGGATTTGTGTGTGGAAA
AAAATGATCTTTTTGCGGTCTGACGGCCGGTTGCAACATGGGATCTGAAA
AGCAGATGACCATCCTTTCAGCACCATCACATTCTTCAGCGTGCGACCTA
TCCCGCACCTGCCTATCTAATTTTCAACATTCACCCTTCCAAGTAAAAAA
AATGCACTCACCAAATCTGTTGTGTGTGAGAAGGAGAAGCAAGAGCGAAC
GGCAGCATGTGGGGTGTGCGTGTGTAGTGTAGCGTGAGAGACACGCGGCG
GGAGTGGCAAACGATACAACAGCACGATACATACCTGGCTTATAGAAATT
ATGGACGATTGATCTTTGAGTGGAGGAGAATGAGGATGGACAGGGAAATG
GGAAGGAAAATGAGTCGTCAAGCCGTACAGCACAGGACCCTTTTGGAGTC
CTCCCTCTACCTCCGCTTGACTTACGCGCCAGCCAGCAAGGAGAGATAGG
CGACGGGGAATAGGAAAATATACTTGACTGCCTTGCCAAAGCGGGAAGCT
CCGGGCATGGTATTGGTGTGCTGTCGAGTGCAATAGCGTGGCAGAGATGG
AGATTGAGGTGGGTGGGGAGGTTGCCGGTGTGAGTACCTGGAACCTGGGT
CTGTATCCTCCTTCGAGGATAGAAGCGCCTTTCGAAGAGGGAAAAAAAGC
CCCTTCTTCCCTGTGCT back to topprotein sequence of jgi.p|Nanoce1779_2|551929 >mRNA_2193-protein ID=mRNA_2193-protein|Name=jgi.p|Nanoce1779_2|551929|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MEEDGDGTVPFDERESALLEDGEAFLARRGTTQPGQAATSGSRATGKKKN
DNNDKNDNKQSKRQQQQQKQQHQKNKHPSVVPRPDSGVSSPSTTKLSIPP
SLHPSRPGGSSSFVSGVFRAIAPAVPRVDCVKVYKGEIKFASGSGVIFTP
EGYMITNSLLVRNALELKVTLADGREFPAEVKGVDEVLDVAVLKILPPSP
PPSSSSSSSSSSSSSFPSSFEYAPIGDSDALQVGDWVLSVGSPRSPGPSV
ILGIVSGLTKTAAEVGRPETQVSFIQTDASFDAGVVGGPLVNEYGEVVGI
NSIGLTTSNTVQFSVPINELKVAVEELAMGNEVLHPSIGVEMMPVTPTLA
AQLNQKAAARQRQIQGGAVVVVNVLEDSPAQQAGLQHLDILLEIDRCPIY
KVEDAQRIIHASGVGRDIEIKVLRSTQEVTVQVRTTDFLTLFRKQQTAKR
YPELKPKVERKREGLNEGGREQLEREGDGEELEESPLGGKGGLHQRSASN
DGKGGNERGEERKKTGLMKQSKKEERQMREEEGDRQATKDREAPDEMHGE
LWT* back to topmRNA from alignment at scaffold_4:1026764..1030013- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2193 ID=mRNA_2193|Name=jgi.p|Nanoce1779_2|551929|organism=Nannochloropsis oceanica|type=mRNA|length=3250bp|location=Sequence derived from alignment at scaffold_4:1026764..1030013- (Nannochloropsis oceanica)
ATGGAGGAGGATGGGGATGGCACCGTGCCATTTGATGAACGCGAATCTGC
CCTTCTGGAGGATGGAGAGGCCTTCCTCGCACGCCGTGGGACTACTCAGC
CCGGGCAAGCCGCCACCTCCGGTTCCCGTGCCACCGGCAAGAAGAAGAAC
GACAACAACGACAAAAACGACAACAAACAAAGCAAAAGGCAACAGCAGCA
GCAAAAGCAGCAGCATCAGAAAAATAAACATCCCTCCGTCGTCCCAAGAC
CCGATTCTGGTGTCTCCTCCCCGTCTACCACCAAGCTCTCTATCCCCCCC
TCCCTCCATCCCTCCCGGCCGGGGGGCTCCTCCTCCTTTGTCTCAGGTGT
GTTCCGCGCCATCGCCCCCGCCGTTCCGCGCGTCGACTGCGTGAAAGTTT
ACAAGGGAGAAATAAAATTCGCCTCCGGTTCGGGCGTTATTTTCACCCCG
GAAGGGTATATGATAACCAATTCTCTTCTTGTGCGGAACGCGTTGGAGTT
GAAGGTGACACTTGCCGACGGTCGAGAATTTCCCGCCGAGGTGAAGGGGG
TGGATGAAGTCCTCGATGTGGCGGTGCTTAAAATCCTTCCTCCCTCCCCC
CCTCCCTCGTCCTCGTCCTCATCCTCGTCCTCGTCCTCGTCCTCATTCCC
TTCCTCTTTTGAATACGCGCCAATCGGAGACTCGGACGCCCTGCAAGTAG
GCGATTGGGTGCTATCGGTGGGTAGCCCTCGTTCCCCCGGCCCTTCCGTC
ATCCTAGGCATTGTTAGTGGCCTCACCAAAACAGCTGCAGAAGTGGGTCG
GCCCGAGACGCAAGTCTCCTTCATCCAAACAGACGCGAGTTTCGATGCAG
GTGTTGTGGGAGGCCCCCTGGTGAACGAGTACGGGGAGGTGGTGGGGATC
AATAGCATCGGGCTCACCACCAGCAACACAGTACAGTTCTCTGTCCCGAT
CAATGAGTTGAAAGTGGCCGTGGAAGAGCTGGCTATGGGGAATGAGGTCC
TGCATCCATCCATTGGGGTGGAGATGATGCCCGTCACTCCCACCCTTGCT
GCTCAGCTGAACCAGAAGGCAGCGGCAAGACAGCGGCAAATCCAGGTTGA
GCAGGAGGAGAAGGCAGTGAAAGAGCTTGCGGAGCAACAGGAGTTGCAAC
GAAAGGAGCAACAGCAACCGCAGCAGCAGCAGGCAGAGAAGGGAGGAAAG
GGCGCGAGAGGACAAAGAAAAAGAGGTGGAATGGAAAGGGGGAGAAGTGC
CTTCTCTGAAATTTTGCGCAAAGCTCAACAAGCAGGCAAGCACCTCCTCC
AACAACCTCCACAAAACCACTACCCACCCTCTCCCTCCCCCTCCCCTTCC
CCGCCGTTTTCTCCTTCCACACCCTCCTCCTCTTCCTCTTCTTCGTCCTC
TTCCTCGCAAATCCATTTCATCCCCGAGGGGGGCGCAGTGGTGGTCGTCA
ACGTTCTAGAAGATTCCCCTGCCCAACAAGCAGGCCTGCAGCACTTGGAC
ATTCTGCTTGAGATCGATCGATGCCCCATCTACAAGGTGGAAGATGCGCA
AAGGATCATCCACGCGTCCGGGGTCGGGAGGGACATAGAGATAAAGGTAC
TAAGAAGCACACAGGAAGTCACTGTGCAAGTGAGGACGACTGATTTTTTG
ACTCTGTTTCGAAAGCAACAGACGGCCAAAAGGTACCCTGAGCTGAAGCC
AAAGGTGGAGAGGAAGAGGGAGGGATTGAACGAGGGGGGAAGGGAACAGT
TGGAGAGGGAGGGGGACGGGGAAGAGCTGGAGGAATCGCCGTTGGGAGGG
AAGGGGGGGCTGCATCAGCGGTCGGCGAGTAATGATGGGAAGGGAGGAAA
TGAGAGAGGTGAAGAGAGAAAGAAGACGGGGTTGATGAAACAGAGTAAGA
AGGAGGAGAGGCAGATGAGGGAGGAGGAGGGAGATAGACAGGCAACAAAA
GATAGGGAAGCACCAGATGAGATGCATGGAGAATTGTGGACTTAAATTAG
GCGATCGCGTCTGTGGTTTTGGAGAAGAGAGACATCGTGAATATATACAT
ATACATGTATTTTCTTACATACAAATCAAATTAAACCAGACTTGCCCGCA
GCAGATAAAACAAATATCCTCATTTTCCCACAATCAATGGACCGATTAAA
ATTTGTTGGAACTTTTTTGTGGTTGCTCTTAGGTTTAGTGACAAAACAAC
AGAAACAGAATCACGACACGTAAAATGAAAGGAACAACTTTACATAGAGA
TGAGGATAGCGGATATTTGATCGGAGCTCGGAACGAGAGGCAGTCTCTTT
GTGGCAGCGCCTTGGCGAAAGCCATTGCGTTCATGTCCCATACAGCGAAA
GCAAATGCACTAATTTCAACTCCAATGATAAATGTATATAGCTCTGCCTT
ATATTCATTTTCTAATATACTTGCTTGCTTTCCAAGGCCCTCATGGAGCC
CTTTTCTCAACGTCTTCCTGGAAAGCAGAAGGCGGCGACGACGGTAAATC
TGGAATGGTCTGTATGTACCAGAGTAAAAAGAGATATGAGATTCAAAAAA
GTTTGAAAGCATGAAAGGATTTGTGTGTGGAAAAAAATGATCTTTTTGCG
GTCTGACGGCCGGTTGCAACATGGGATCTGAAAAGCAGATGACCATCCTT
TCAGCACCATCACATTCTTCAGCGTGCGACCTATCCCGCACCTGCCTATC
TAATTTTCAACATTCACCCTTCCAAGTAAAAAAAATGCACTCACCAAATC
TGTTGTGTGTGAGAAGGAGAAGCAAGAGCGAACGGCAGCATGTGGGGTGT
GCGTGTGTAGTGTAGCGTGAGAGACACGCGGCGGGAGTGGCAAACGATAC
AACAGCACGATACATACCTGGCTTATAGAAATTATGGACGATTGATCTTT
GAGTGGAGGAGAATGAGGATGGACAGGGAAATGGGAAGGAAAATGAGTCG
TCAAGCCGTACAGCACAGGACCCTTTTGGAGTCCTCCCTCTACCTCCGCT
TGACTTACGCGCCAGCCAGCAAGGAGAGATAGGCGACGGGGAATAGGAAA
ATATACTTGACTGCCTTGCCAAAGCGGGAAGCTCCGGGCATGGTATTGGT
GTGCTGTCGAGTGCAATAGCGTGGCAGAGATGGAGATTGAGGTGGGTGGG
GAGGTTGCCGGTGTGAGTACCTGGAACCTGGGTCTGTATCCTCCTTCGAG
GATAGAAGCGCCTTTCGAAGAGGGAAAAAAAGCCCCTTCTTCCCTGTGCT
back to topCoding sequence (CDS) from alignment at scaffold_4:1026764..1030013- >mRNA_2193 ID=mRNA_2193|Name=jgi.p|Nanoce1779_2|551929|organism=Nannochloropsis oceanica|type=CDS|length=3324bp|location=Sequence derived from alignment at scaffold_4:1026764..1030013- (Nannochloropsis oceanica)
GGGGGCGCAGTGGTGGTCGTCAACGTTCTAGAAGATTCCCCTGCCCAACA
AGCAGGCCTGCAGCACTTGGACATTCTGCTTGAGATCGATCGATGCCCCA
TCTACAAGGTGGAAGATGCGCAAAGGATCATCCACGCGTCCGGGGTCGGG
AGGGACATAGAGATAAAGGTACTAAGAAGCACACAGGAAGTCACTGTGCA
AGTGAGGACGACTGATTTTTTGACTCTGTTTCGAAAGCAACAGACGGCCA
AAAGGTACCCTGAGCTGAAGCCAAAGGTGGAGAGGAAGAGGGAGGGATTG
AACGAGGGGGGAAGGGAACAGTTGGAGAGGGAGGGGGACGGGGAAGAGCT
GGAGGAATCGCCGTTGGGAGGGAAGGGGGGGCTGCATCAGCGGTCGGCGA
GTAATGATGGGAAGGGAGGAAATGAGAGAGGTGAAGAGAGAAAGAAGACG
GGGTTGATGAAACAGAGTAAGAAGGAGGAGAGGCAGATGAGGGAGGAGGA
GGGAGATAGACAGGCAACAAAAGATAGGGAAGCACCAGATGAGATGCATG
GAGAATTGTGGACTTAAATGGAGGAGGATGGGGATGGCACCGTGCCATTT
GATGAACGCGAATCTGCCCTTCTGGAGGATGGAGAGGCCTTCCTCGCACG
CCGTGGGACTACTCAGCCCGGGCAAGCCGCCACCTCCGGTTCCCGTGCCA
CCGGCAAGAAGAAGAACGACAACAACGACAAAAACGACAACAAACAAAGC
AAAAGGCAACAGCAGCAGCAAAAGCAGCAGCATCAGAAAAATAAACATCC
CTCCGTCGTCCCAAGACCCGATTCTGGTGTCTCCTCCCCGTCTACCACCA
AGCTCTCTATCCCCCCCTCCCTCCATCCCTCCCGGCCGGGGGGCTCCTCC
TCCTTTGTCTCAGGTGTGTTCCGCGCCATCGCCCCCGCCGTTCCGCGCGT
CGACTGCGTGAAAGTTTACAAGGGAGAAATAAAATTCGCCTCCGGTTCGG
GCGTTATTTTCACCCCGGAAGGGTATATGATAACCAATTCTCTTCTTGTG
CGGAACGCGTTGGAGTTGAAGGTGACACTTGCCGACGGTCGAGAATTTCC
CGCCGAGGTGAAGGGGGTGGATGAAGTCCTCGATGTGGCGGTGCTTAAAA
TCCTTCCTCCCTCCCCCCCTCCCTCGTCCTCGTCCTCATCCTCGTCCTCG
TCCTCGTCCTCATTCCCTTCCTCTTTTGAATACGCGCCAATCGGAGACTC
GGACGCCCTGCAAGTAGGCGATTGGGTGCTATCGGTGGGTAGCCCTCGTT
CCCCCGGCCCTTCCGTCATCCTAGGCATTGTTAGTGGCCTCACCAAAACA
GCTGCAGAAGTGGGTCGGCCCGAGACGCAAGTCTCCTTCATCCAAACAGA
CGCGAGTTTCGATGCAGGTGTTGTGGGAGGCCCCCTGGTGAACGAGTACG
GGGAGGTGGTGGGGATCAATAGCATCGGGCTCACCACCAGCAACACAGTA
CAGTTCTCTGTCCCGATCAATGAGTTGAAAGTGGCCGTGGAAGAGCTGGC
TATGGGGAATGAGGTCCTGCATCCATCCATTGGGGTGGAGATGATGCCCG
TCACTCCCACCCTTGCTGCTCAGCTGAACCAGAAGGCAGCGGCAAGACAG
CGGCAAATCCAGGGGGGCGCAGTGGTGGTCGTCAACGTTCTAGAAGATTC
CCCTGCCCAACAAGCAGGCCTGCAGCACTTGGACATTCTGCTTGAGATCG
ATCGATGCCCCATCTACAAGGTGGAAGATGCGCAAAGGATCATCCACGCG
TCCGGGGTCGGGAGGGACATAGAGATAAAGGTACTAAGAAGCACACAGGA
AGTCACTGTGCAAGTGAGGACGACTGATTTTTTGACTCTGTTTCGAAAGC
AACAGACGGCCAAAAGGTACCCTGAGCTGAAGCCAAAGGTGGAGAGGAAG
AGGGAGGGATTGAACGAGGGGGGAAGGGAACAGTTGGAGAGGGAGGGGGA
CGGGGAAGAGCTGGAGGAATCGCCGTTGGGAGGGAAGGGGGGGCTGCATC
AGCGGTCGGCGAGTAATGATGGGAAGGGAGGAAATGAGAGAGGTGAAGAG
AGAAAGAAGACGGGGTTGATGAAACAGAGTAAGAAGGAGGAGAGGCAGAT
GAGGGAGGAGGAGGGAGATAGACAGGCAACAAAAGATAGGGAAGCACCAG
ATGAGATGCATGGAGAATTGTGGACTTAAATGGAGGAGGATGGGGATGGC
ACCGTGCCATTTGATGAACGCGAATCTGCCCTTCTGGAGGATGGAGAGGC
CTTCCTCGCACGCCGTGGGACTACTCAGCCCGGGCAAGCCGCCACCTCCG
GTTCCCGTGCCACCGGCAAGAAGAAGAACGACAACAACGACAAAAACGAC
AACAAACAAAGCAAAAGGCAACAGCAGCAGCAAAAGCAGCAGCATCAGAA
AAATAAACATCCCTCCGTCGTCCCAAGACCCGATTCTGGTGTCTCCTCCC
CGTCTACCACCAAGCTCTCTATCCCCCCCTCCCTCCATCCCTCCCGGCCG
GGGGGCTCCTCCTCCTTTGTCTCAGGTGTGTTCCGCGCCATCGCCCCCGC
CGTTCCGCGCGTCGACTGCGTGAAAGTTTACAAGGGAGAAATAAAATTCG
CCTCCGGTTCGGGCGTTATTTTCACCCCGGAAGGGTATATGATAACCAAT
TCTCTTCTTGTGCGGAACGCGTTGGAGTTGAAGGTGACACTTGCCGACGG
TCGAGAATTTCCCGCCGAGGTGAAGGGGGTGGATGAAGTCCTCGATGTGG
CGGTGCTTAAAATCCTTCCTCCCTCCCCCCCTCCCTCGTCCTCGTCCTCA
TCCTCGTCCTCGTCCTCGTCCTCATTCCCTTCCTCTTTTGAATACGCGCC
AATCGGAGACTCGGACGCCCTGCAAGTAGGCGATTGGGTGCTATCGGTGG
GTAGCCCTCGTTCCCCCGGCCCTTCCGTCATCCTAGGCATTGTTAGTGGC
CTCACCAAAACAGCTGCAGAAGTGGGTCGGCCCGAGACGCAAGTCTCCTT
CATCCAAACAGACGCGAGTTTCGATGCAGGTGTTGTGGGAGGCCCCCTGG
TGAACGAGTACGGGGAGGTGGTGGGGATCAATAGCATCGGGCTCACCACC
AGCAACACAGTACAGTTCTCTGTCCCGATCAATGAGTTGAAAGTGGCCGT
GGAAGAGCTGGCTATGGGGAATGAGGTCCTGCATCCATCCATTGGGGTGG
AGATGATGCCCGTCACTCCCACCCTTGCTGCTCAGCTGAACCAGAAGGCA
GCGGCAAGACAGCGGCAAATCCAG back to top
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