jgi.p|Nanoce1779_2|579409, mRNA_2191 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579409
Unique Name	mRNA_2191
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1322
Alignment location	scaffold_4:1007914..1009570 +

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Properties


Property Name	Value
TranscriptId	579495
Track	FilteredModels2
ProteinId	579409

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1007914..1009570 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579409	gene_2191	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579409	mRNA_2191-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2191	CDS_2191	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1007914..1009570+
coding sequence from alignment at scaffold_4:1007914..1009570+

mRNA sequence

>mRNA_2191 ID=mRNA_2191|Name=jgi.p|Nanoce1779_2|579409|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp
AACAGGAACGGCTGATAATCATTCTACCTCTTCGCCACTTTGTCGTCCGC
CCGTTGCTCCTGGCAAGCGCGGCCTCTGCCTTTCGCTGCCCTACTGCTCC
ACTCATCCAGTTTCCTACTTCAGCTGCTGCCATCTACGCCTACTCCACCG
GAGGAGGCAGCACGACAGAGCGGATGTCCTCGACGTTGCCATCCATGGAG
GGGACCCTTTTTACGTACTTCAGAGACGAGTATGTGAATCGGGTAGCGTT
TCTCTCCGGACGCAAGGCGCACCGGCGGCATGTGGTGCTTATTGGAGGAC
TAGGGGACGGCCTCCTCCCCGTCCCCTACACCCAAAGTCTCGCAGCAGCC
TTAGACGAACGTGGGTGGGCCTTAATCCAACCACTTCTCTCTTCCTCATA
CACGGGCTTTGGGCATTCCTCCCTCAAAACCGACGCGGTGGAACTTCATC
ATTTAATCACTTACTTGCAGGAGGAAATGGGTTCAGAAACCGTAGGGCTG
GTAGGACACTCAACAGGGACTCAAGACAGTGTTTACTATGTGAAAGCATG
CGAGGGTGACGCATCAAAAAAGCCGGCTTTCATAATACTACAAGCTCCTG
TGAGTGATCGAGAGCATCTCGCTTTAGAAGAGCGGACGACGGAATTTGTG
ACCATGGCCCGCGCGATGCAAAGAGAGGGAAAAGGCGAGGAGATGCTCCC
TCGAGCAGCAATGTGGGCCCCAGTGACTGCGAACCGTTTCCTGGACCTGG
CGACGAAGGATGGGTTGGATGACATGTTTTCGAGTGATTTGACAGAGAGG
GAATTGAGAGATCGCTTAGGGCACCTTGACGTCCCGACGTTGTTCTTATT
CTCGGGAGCGGATGAATATGTTCCGTTGGGTGTGGATGTGCAGGAGCTAG
GGGAGAAGTTTGTCAAGGCTTGCGCCGGGGTGTGTCCGCTGTCGAGAGCG
GCAACGGTGGTTGGTGCCAAACATTCGGGGAAAGGGCACGAGGAGGTGGT
AGTGGTGACAATGCTGGCATTTTTGGACGAGGTGGAGAGCTTGGCAGCAA
GTCAAGCTTAGGTTAATTGACTGCGCTGGAATTGTACATGCTCAAAAATT
GAACGGACAATTCGAACAGGATCTGTTAGAATCGTCTGACTTACCAGTGA
GATCATGTGCATCAGCAAAGCATCTTAGTGATAGGGAGCGGTGGAAGATC
TCTGCCGTAAGAAACATACGGCTACCGCCACCGTCAGTGGTGGCAGCATC
AGAGTAAAGCTTCACACGCAATTTAAGAAATCGCAACCTGGATTGCAAAA
TGCGAATTTAACTTATTGACCA

protein sequence of jgi.p|Nanoce1779_2|579409

>mRNA_2191-protein ID=mRNA_2191-protein|Name=jgi.p|Nanoce1779_2|579409|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MSSTLPSMEGTLFTYFRDEYVNRVAFLSGRKAHRRHVVLIGGLGDGLLPV
PYTQSLAAALDERGWALIQPLLSSSYTGFGHSSLKTDAVELHHLITYLQE
EMGSETVGLVGHSTGTQDSVYYVKACEGDASKKPAFIILQAPVSDREHLA
LEERTTEFVTMARAMQREGKGEEMLPRAAMWAPVTANRFLDLATKDGLDD
MFSSDLTERELRDRLGHLDVPTLFLFSGADEYVPLGVDVQELGEKFVKAC
AGVCPLSRAATVVGAKHSGKGHEEVVVVTMLAFLDEVESLAASQA*

mRNA from alignment at scaffold_4:1007914..1009570+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2191 ID=mRNA_2191|Name=jgi.p|Nanoce1779_2|579409|organism=Nannochloropsis oceanica|type=mRNA|length=1657bp|location=Sequence derived from alignment at scaffold_4:1007914..1009570+ (Nannochloropsis oceanica)
AACAGGAACGGCTGATAATCATTCTACCTCTTCGCCACTTTGTCGTCCGC
CCGTTGCTCCTGGCAAGCGCGGCCTCTGCCTTTCGCTGCCCTACTGCTCC
ACTCATCCAGTTTCCTACTTCAGCTGCTGCCATCTACGCCTACTCCACCG
GAGGAGGCAGCACGACAGAGCGGATGTCCTCGACGTTGCCATCCATGGAG
GGGACCCTTTTTACGTACTTCAGAGACGAGTATGTGAATCGGGTAGCGTT
TCTCTCCGGACGCAAGGCGCACCGGCGGCATGTGGTGCTTATTGGAGGAC
TAGGGGTAAGTGTGGGCGGGGGCGAGTGGCGTGGAAGGAGATGGGGGACT
TGGGTATAATGAGGCTGTGGGTATTCATCCTTAGCATAGCTTACGTCTTT
TCCTGAAAAGCTGTGCGAGGCGGGTAGATTTGAATGAGGAGATTAGCCGG
GGGGATGGGAAAAAACTGGACTGGCGCATGAATATATGTTTTTTGTGCAT
CGGCGTTCCGAAGGGGGCGCCATCGTTCGATGTAATTTTATTCATTTTTA
GCACAGACGAGATAAAAAGGAGGAATATACACACGCCTCAGCCCCCTCCC
GACGCAATCCTTCCCGACATTTACCCATCCCCATACTCAGGACGGCCTCC
TCCCCGTCCCCTACACCCAAAGTCTCGCAGCAGCCTTAGACGAACGTGGG
TGGGCCTTAATCCAACCACTTCTCTCTTCCTCATACACGGGCTTTGGGCA
TTCCTCCCTCAAAACCGACGCGGTGGAACTTCATCATTTAATCACTTACT
TGCAGGAGGAAATGGGTTCAGAAACCGTAGGGCTGGTAGGACACTCAACA
GGGACTCAAGACAGTGTTTACTATGTGAAAGCATGCGAGGGTGACGCATC
AAAAAAGCCGGCTTTCATAATACTACAAGCTCCTGTGAGTGATCGAGAGC
ATCTCGCTTTAGAAGAGCGGACGACGGAATTTGTGACCATGGCCCGCGCG
ATGCAAAGAGAGGGAAAAGGCGAGGAGATGCTCCCTCGAGCAGCAATGTG
GGCCCCAGTGACTGCGAACCGTTTCCTGGACCTGGCGACGAAGGATGGGT
TGGATGACATGTTTTCGAGTGATTTGACAGAGAGGGAATTGAGAGATCGC
TTAGGGCACCTTGACGTCCCGACGTTGTTCTTATTCTCGGGAGCGGATGA
ATATGTTCCGTTGGGTGTGGATGTGCAGGAGCTAGGGGAGAAGTTTGTCA
AGGCTTGCGCCGGGGTGTGTCCGCTGTCGAGAGCGGCAACGGTGGTTGGT
GCCAAACATTCGGGGAAAGGGCACGAGGAGGTGGTAGTGGTGACAATGCT
GGCATTTTTGGACGAGGTGGAGAGCTTGGCAGCAAGTCAAGCTTAGGTTA
ATTGACTGCGCTGGAATTGTACATGCTCAAAAATTGAACGGACAATTCGA
ACAGGATCTGTTAGAATCGTCTGACTTACCAGTGAGATCATGTGCATCAG
CAAAGCATCTTAGTGATAGGGAGCGGTGGAAGATCTCTGCCGTAAGAAAC
ATACGGCTACCGCCACCGTCAGTGGTGGCAGCATCAGAGTAAAGCTTCAC
ACGCAATTTAAGAAATCGCAACCTGGATTGCAAAATGCGAATTTAACTTA
TTGACCA

Coding sequence (CDS) from alignment at scaffold_4:1007914..1009570+

>mRNA_2191 ID=mRNA_2191|Name=jgi.p|Nanoce1779_2|579409|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_4:1007914..1009570+ (Nannochloropsis oceanica)
ATGTCCTCGACGTTGCCATCCATGGAGGGGACCCTTTTTACGTACTTCAG
AGACGAGTATGTGAATCGGGTAGCGTTTCTCTCCGGACGCAAGGCGCACC
GGCGGCATGTGGTGCTTATTGGAGGACTAGGGGACGGCCTCCTCCCCGTC
CCCTACACCCAAAGTCTCGCAGCAGCCTTAGACGAACGTGGGTGGGCCTT
AATCCAACCACTTCTCTCTTCCTCATACACGGGCTTTGGGCATTCCTCCC
TCAAAACCGACGCGGTGGAACTTCATCATTTAATCACTTACTTGCAGGAG
GAAATGGGTTCAGAAACCGTAGGGCTGGTAGGACACTCAACAGGGACTCA
AGACAGTGTTTACTATGTGAAAGCATGCGAGGGTGACGCATCAAAAAAGC
CGGCTTTCATAATACTACAAGCTCCTGTGAGTGATCGAGAGCATCTCGCT
TTAGAAGAGCGGACGACGGAATTTGTGACCATGGCCCGCGCGATGCAAAG
AGAGGGAAAAGGCGAGGAGATGCTCCCTCGAGCAGCAATGTGGGCCCCAG
TGACTGCGAACCGTTTCCTGGACCTGGCGACGAAGGATGGGTTGGATGAC
ATGTTTTCGAGTGATTTGACAGAGAGGGAATTGAGAGATCGCTTAGGGCA
CCTTGACGTCCCGACGTTGTTCTTATTCTCGGGAGCGGATGAATATGTTC
CGTTGGGTGTGGATGTGCAGGAGCTAGGGGAGAAGTTTGTCAAGGCTTGC
GCCGGGGTGTGTCCGCTGTCGAGAGCGGCAACGGTGGTTGGTGCCAAACA
TTCGGGGAAAGGGCACGAGGAGGTGGTAGTGGTGACAATGCTGGCATTTT
TGGACGAGGTGGAGAGCTTGGCAGCAAGTCAAGCTTAGATGTCCTCGACG
TTGCCATCCATGGAGGGGACCCTTTTTACGTACTTCAGAGACGAGTATGT
GAATCGGGTAGCGTTTCTCTCCGGACGCAAGGCGCACCGGCGGCATGTGG
TGCTTATTGGAGGACTAGGGGACGGCCTCCTCCCCGTCCCCTACACCCAA
AGTCTCGCAGCAGCCTTAGACGAACGTGGGTGGGCCTTAATCCAACCACT
TCTCTCTTCCTCATACACGGGCTTTGGGCATTCCTCCCTCAAAACCGACG
CGGTGGAACTTCATCATTTAATCACTTACTTGCAGGAGGAAATGGGTTCA
GAAACCGTAGGGCTGGTAGGACACTCAACAGGGACTCAAGACAGTGTTTA
CTATGTGAAAGCATGCGAGGGTGACGCATCAAAAAAGCCGGCTTTCATAA
TACTACAAGCTCCTGTGAGTGATCGAGAGCATCTCGCTTTAGAAGAGCGG
ACGACGGAATTTGTGACCATGGCCCGCGCGATGCAAAGAGAGGGAAAAGG
CGAGGAGATGCTCCCTCGAGCAGCAATGTGGGCCCCAGTGACTGCGAACC
GTTTCCTGGACCTGGCGACGAAGGATGGGTTGGATGACATGTTTTCGAGT
GATTTGACAGAGAGGGAATTGAGAGATCGCTTAGGGCACCTTGACGTCCC
GACGTTGTTCTTATTCTCGGGAGCGGATGAATATGTTCCGTTGGGTGTGG
ATGTGCAGGAGCTAGGGGAGAAGTTTGTCAAGGCTTGCGCCGGGGTGTGT
CCGCTGTCGAGAGCGGCAACGGTGGTTGGTGCCAAACATTCGGGGAAAGG
GCACGAGGAGGTGGTAGTGGTGACAATGCTGGCATTTTTGGACGAGGTGG
AGAGCTTGGCAGCAAGTCAAGCTTAG

Synonyms

Publications