jgi.p|Nanoce1779_2|579408, mRNA_2190 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579408
Unique Name	mRNA_2190
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2324
Alignment location	scaffold_4:1005129..1007546 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579494
Track	FilteredModels2
ProteinId	579408

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1005129..1007546 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579408	gene_2190	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579408	mRNA_2190-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2190	CDS_2190	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1005129..1007546+
coding sequence from alignment at scaffold_4:1005129..1007546+

mRNA sequence

>mRNA_2190 ID=mRNA_2190|Name=jgi.p|Nanoce1779_2|579408|organism=Nannochloropsis oceanica|type=mRNA|length=2324bp
ACAGAGAAATCACCATGCCACAATCCGTCGTCATTCCGCCGGCACAAGAC
AGCCATCTACAGACCCGCCATGCACGCAAAGCCGGGTCGCGTGCCATCCT
TGTTGCCGCGGTGACCGGCATGCTGGGCATCCTCGGCGCCACGGTTGTCG
TCGTGCATCATCGCCGCCCTATGTACACTGACATGCCCAGCCGCTTCTTG
TCCAGCCGCGTCGCCGCCCAGAGGAGCACCATTGCCGAGCCAATCATCTC
TTTAGAGAGCAATCGCCATGCGCCCGTCGCAGCCGCCGCTTCCGCCAAGT
CTCTACGGGCCTCTACAGCTGCCGAGGGCACGACAGCGGCCTCCTCTACT
TCTTTTAAGTCCACCGCGCCCTACACCGAGGTCGCTCTGGCTGATGAGAT
TATCGGTTTGCCGGGCCTGACCGAAAAGTCGCTCAACTTTCGTCAGTTCT
CCGGCTACCTCAATCTGAGGGGCACAGAGAAGAACATCTTTTACTGGTAC
GTTGAGGCGGAGGAGAAGCCCGACGAGGCACCCCTCGTCTTCTGGACCAA
TGGCGGCCCCGGATGTTCTGGGCTGTTCGGCTTTATGAATGAAAACGGGC
CTTTCCGTCCGACTGCCGACGGCAAGGCTGTGCATCTCAACCCTTACAGC
TGGAACAAGGTTGCCAACATGCTCTTTGTCGAGCAGCCGGTAACGGTCGG
TTTCAGTTACACGGATAACCCAAAGGACCTCAATTTTGGTGACAAGCAAG
CGGCGGAGGACAATTTTCAGGTTATCCAAGCTTTCCTCGAACGCTTCCCT
CACCTGCGTAATCGTGACTTGCATCTCTCAGGGGAGAGCTACGGTGGCCA
CTACCTCCCTCAACTGGCCCAGTACATTGTCGACCACCCTAACAAAGATG
CTCCCATTAATTTGAAAGGTTTTCTCGTTGGAAATCCGCTGACCGATCCG
GTGGAAAATTTAATTGGTGCAATTGAAAGCTTTTGGGGCCATTCCATCTT
GCCGCCTGATTTGTACGCTGAATGGCTGGATAAGTGCAGGACCCAGACAC
AGAACCCCGGGATCTTGTTCGGGGATTCGTGCATGCGGCTGCAGAGTCTG
CTGTGGAGCAATGTGCAGGGGCTTAACCCGTATGCACTCGACTACCCGGT
GTGTCTGACAGCGACAAAGGCTGGCTTGGCTAACGCCCGGCAGCGTGGCG
CAATGTTCCCTCCATCCACCGAGGCTATTCTTGCTCAAGGGCGGAATCAG
CGATATAAGCTTTTGAGTCACACGCTGCCTTCTTTTATTGGCAATCGCTC
TGGTCTTGATCTGGCGTCGATGAACAAGGAGGGGACAGTGCCTCGGTATG
AACCGTGTGAAGACGCGTTTGCTGCGTCTTACCTCAATCGAAAGGATGTC
CAGCATGCGATTCACGCGCGGGAAGGGACCAAGTGGGCCGATTGTTCCGA
CACTGTATTTTACAATTTTAACCATAATGACCGGCATGCTTTTATGCAGG
ACACTTATACATATTTGGTGGACGAGAGGAAGAAGTTGAAAATGAAGATT
CTGATTTTCTCAGGCGCTGATGACTCGGTCTGCGCGACGCAGGGGACGTT
GTTTTGGGTGGGGAACATGGGATGGCCTACCAAGCAGGGTCAGGAGTGGA
CCTCTTGGGGAATTGACGGCCAGGTTTCTGGTTTCTTGCAAGGTTACCAG
AACGGGATCACGATCGCCACGGTGTCGGGGGCGGGGCACGAGGTACCCGC
TTACAAACCTGTAGAAGCCCTGGCCTTGTTCAAGGCCTACCTAAACGACA
ATATCTGGCCGGCAGGAAACGAAAAGAAGTAATAAGTTGTTAAAAGGAGG
GGGAGGGCACCGGCAGAACTGAGGATGGTAGCTGCATCCTCCCCGTGGAT
GGTTCATACAGTTGTCATGATTGCCTTGTGTCCCTTGTGATTGCAAAACC
ATCCGCGCACACGCAGGAGTGTGGCAATTTCTGGAGAAAGTATAAATAAA
GAGAAAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAGCAGCCCAGAACGCGCAGTACATGTATTCCGAAAGGGAGCG
ACGATTGAAACAAAGCAATATCAGTCAGCAAAGAGATTGTAGGGTGTGAA
TTAAGAGCACAGTCAAGAAGAAGACAAACAGATATGAAAAGGCCATCAGA
CGCCGCATGTATGAGCGGGGCAGCAAGCAACACAAAACATTGTGGAACGA
GCAGCCCGCAGTGTGAAGATGAAGATAGAATACAAAGAAATAACATGCAC
GATGGAGTTGTGCAACTAATGATA

protein sequence of jgi.p|Nanoce1779_2|579408

>mRNA_2190-protein ID=mRNA_2190-protein|Name=jgi.p|Nanoce1779_2|579408|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MPQSVVIPPAQDSHLQTRHARKAGSRAILVAAVTGMLGILGATVVVVHHR
RPMYTDMPSRFLSSRVAAQRSTIAEPIISLESNRHAPVAAAASAKSLRAS
TAAEGTTAASSTSFKSTAPYTEVALADEIIGLPGLTEKSLNFRQFSGYLN
LRGTEKNIFYWYVEAEEKPDEAPLVFWTNGGPGCSGLFGFMNENGPFRPT
ADGKAVHLNPYSWNKVANMLFVEQPVTVGFSYTDNPKDLNFGDKQAAEDN
FQVIQAFLERFPHLRNRDLHLSGESYGGHYLPQLAQYIVDHPNKDAPINL
KGFLVGNPLTDPVENLIGAIESFWGHSILPPDLYAEWLDKCRTQTQNPGI
LFGDSCMRLQSLLWSNVQGLNPYALDYPVCLTATKAGLANARQRGAMFPP
STEAILAQGRNQRYKLLSHTLPSFIGNRSGLDLASMNKEGTVPRYEPCED
AFAASYLNRKDVQHAIHAREGTKWADCSDTVFYNFNHNDRHAFMQDTYTY
LVDERKKLKMKILIFSGADDSVCATQGTLFWVGNMGWPTKQGQEWTSWGI
DGQVSGFLQGYQNGITIATVSGAGHEVPAYKPVEALALFKAYLNDNIWPA
GNEKK*

mRNA from alignment at scaffold_4:1005129..1007546+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2190 ID=mRNA_2190|Name=jgi.p|Nanoce1779_2|579408|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp|location=Sequence derived from alignment at scaffold_4:1005129..1007546+ (Nannochloropsis oceanica)
ACAGAGAAATCACCATGCCACAATCCGTCGTCATTCCGCCGGCACAAGAC
AGCCATCTACAGACCCGCCATGCACGCAAAGCCGGGTCGCGTGCCATCCT
TGTTGCCGCGGTGACCGGCATGCTGGGCATCCTCGGCGCCACGGTTGTCG
TCGTGCATCATCGCCGCCCTATGTACACTGACATGCCCAGCCGCTTCTTG
TCCAGCCGCGTCGCCGCCCAGAGGAGCACCATTGCCGAGCCAATCATCTC
TTTAGAGAGCAATCGCCATGCGCCCGTCGCAGCCGCCGCTTCCGCCAAGT
CTCTACGGGCCTCTACAGCTGCCGAGGGCACGACAGCGGCCTCCTCTACT
TCTTTTAAGTCCACCGCGCCCTACACCGAGGTCGCTCTGGCTGATGAGAT
TATCGGTTTGCCGGGCCTGACCGAAAAGTCGCTCAACTTTCGTCAGTTCT
CCGGCTACCTCAATCTGAGGGGCACAGAGAAGAACATCTTTTACTGGTAC
GTTGAGGCGGAGGAGAAGCCCGACGAGGCACCCCTCGTCTTCTGGACCAA
TGGCGGCCCCGGATGTTCTGGGCTGTTCGGCTTTATGAATGAAAACGGGC
CTTTCCGTCCGACTGCCGACGGCAAGGCTGTGCATCTCAACCCTTACAGC
TGGAACAAGGTTGCCAACATGCTCTTTGTCGAGCAGCCGGTAACGGTCGG
TTTCAGTTACACGGATAACCCAAAGGACCTCAATTTTGGTGACAAGCAAG
CGGCGGAGGACAATTTTCAGGTTATCCAAGCTTTCCTCGAACGCTTCCCT
CACCTGCGTAATCGTGACTTGCATCTCTCAGGGGAGAGCTACGGTGGCCA
CTACCTCCCTCAACTGGCCCAGTACATTGTCGACCACCCTAACAAAGATG
CTCCCATTAATTTGAAAGGTTTTCTCGTTGGAAATCCGCTGACCGATCCG
GTGGAAAATTTAATTGGTGCAATTGAAAGCTTTTGGGGCCATTCCATCTT
GCCGCCTGATTTGTACGCTGAATGGCTGGATAAGTGCAGGACCCAGACAC
AGAACCCCGGGATCTTGTTCGGGGATTCGTGCATGCGGCTGCAGAGTCTG
CTGTGGAGCAATGTGCAGGGGCTTAACCCGTATGCACTCGACTACCCGGT
GTGTCTGACAGCGACAAAGGCTGGCTTGGCTAACGCCCGGCAGCGTGGCG
CAATGTTCCCTCCATCCACCGAGGCTATTCTTGCTCAAGGGCGGAATCAG
CGATATAAGCTTTTGAGTCACACGCTGCCTTCTTTTATTGGCAATCGCTC
TGGTCTTGATCTGGCGTCGATGAACAAGGAGGGGACAGTGCCTCGGTATG
AACCGTGTGAAGACGCGTTTGCTGCGTCTTACCTCAATCGAAAGGATGTC
CAGCATGCGATTCACGCGCGGGAAGGGACCAAGTGGGCCGATTGTTCCGA
CACTGTATTTTACAATTTTAACCATAATGACCGGCATGCTTTTATGCAGG
ACACTTATACATATTTGGTGGACGAGAGGAAGAAGTTGAAAATGAAGATT
CTGATTTTCTCAGGCGCTGATGACTCGGTCTGCGCGACGCAGGGGACGTT
GTTTTGGGTGGGGAACATGGGATGGCCTACCAAGCAGGGTCAGGAGTGGA
CCTCTTGGGGAATTGACGGCCAGGTTTCTGGTTTCTTGCAAGGTTACCAG
AACGGGATCACGATCGCCACGGTGTCGGGGGCGGGGCACGAGGTAAGGAA
AATAATTCAGCGTATCCATGCAGCAATTAAAATTCCCTTCCCGACAAGCA
CCGAGTGCTCACTTTCTTATTATTCATTCAATATAGGTACCCGCTTACAA
ACCTGTAGAAGCCCTGGCCTTGTTCAAGGCCTACCTAAACGACAATATCT
GGCCGGCAGGAAACGAAAAGAAGTAATAAGTTGTTAAAAGGAGGGGGAGG
GCACCGGCAGAACTGAGGATGGTAGCTGCATCCTCCCCGTGGATGGTTCA
TACAGTTGTCATGATTGCCTTGTGTCCCTTGTGATTGCAAAACCATCCGC
GCACACGCAGGAGTGTGGCAATTTCTGGAGAAAGTATAAATAAAGAGAAA
GCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAGCCCAGAACGCGCAGTACATGTATTCCGAAAGGGAGCGACGATT
GAAACAAAGCAATATCAGTCAGCAAAGAGATTGTAGGGTGTGAATTAAGA
GCACAGTCAAGAAGAAGACAAACAGATATGAAAAGGCCATCAGACGCCGC
ATGTATGAGCGGGGCAGCAAGCAACACAAAACATTGTGGAACGAGCAGCC
CGCAGTGTGAAGATGAAGATAGAATACAAAGAAATAACATGCACGATGGA
GTTGTGCAACTAATGATA

Coding sequence (CDS) from alignment at scaffold_4:1005129..1007546+

>mRNA_2190 ID=mRNA_2190|Name=jgi.p|Nanoce1779_2|579408|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_4:1005129..1007546+ (Nannochloropsis oceanica)
ATGCCACAATCCGTCGTCATTCCGCCGGCACAAGACAGCCATCTACAGAC
CCGCCATGCACGCAAAGCCGGGTCGCGTGCCATCCTTGTTGCCGCGGTGA
CCGGCATGCTGGGCATCCTCGGCGCCACGGTTGTCGTCGTGCATCATCGC
CGCCCTATGTACACTGACATGCCCAGCCGCTTCTTGTCCAGCCGCGTCGC
CGCCCAGAGGAGCACCATTGCCGAGCCAATCATCTCTTTAGAGAGCAATC
GCCATGCGCCCGTCGCAGCCGCCGCTTCCGCCAAGTCTCTACGGGCCTCT
ACAGCTGCCGAGGGCACGACAGCGGCCTCCTCTACTTCTTTTAAGTCCAC
CGCGCCCTACACCGAGGTCGCTCTGGCTGATGAGATTATCGGTTTGCCGG
GCCTGACCGAAAAGTCGCTCAACTTTCGTCAGTTCTCCGGCTACCTCAAT
CTGAGGGGCACAGAGAAGAACATCTTTTACTGGTACGTTGAGGCGGAGGA
GAAGCCCGACGAGGCACCCCTCGTCTTCTGGACCAATGGCGGCCCCGGAT
GTTCTGGGCTGTTCGGCTTTATGAATGAAAACGGGCCTTTCCGTCCGACT
GCCGACGGCAAGGCTGTGCATCTCAACCCTTACAGCTGGAACAAGGTTGC
CAACATGCTCTTTGTCGAGCAGCCGGTAACGGTCGGTTTCAGTTACACGG
ATAACCCAAAGGACCTCAATTTTGGTGACAAGCAAGCGGCGGAGGACAAT
TTTCAGGTTATCCAAGCTTTCCTCGAACGCTTCCCTCACCTGCGTAATCG
TGACTTGCATCTCTCAGGGGAGAGCTACGGTGGCCACTACCTCCCTCAAC
TGGCCCAGTACATTGTCGACCACCCTAACAAAGATGCTCCCATTAATTTG
AAAGGTTTTCTCGTTGGAAATCCGCTGACCGATCCGGTGGAAAATTTAAT
TGGTGCAATTGAAAGCTTTTGGGGCCATTCCATCTTGCCGCCTGATTTGT
ACGCTGAATGGCTGGATAAGTGCAGGACCCAGACACAGAACCCCGGGATC
TTGTTCGGGGATTCGTGCATGCGGCTGCAGAGTCTGCTGTGGAGCAATGT
GCAGGGGCTTAACCCGTATGCACTCGACTACCCGGTGTGTCTGACAGCGA
CAAAGGCTGGCTTGGCTAACGCCCGGCAGCGTGGCGCAATGTTCCCTCCA
TCCACCGAGGCTATTCTTGCTCAAGGGCGGAATCAGCGATATAAGCTTTT
GAGTCACACGCTGCCTTCTTTTATTGGCAATCGCTCTGGTCTTGATCTGG
CGTCGATGAACAAGGAGGGGACAGTGCCTCGGTATGAACCGTGTGAAGAC
GCGTTTGCTGCGTCTTACCTCAATCGAAAGGATGTCCAGCATGCGATTCA
CGCGCGGGAAGGGACCAAGTGGGCCGATTGTTCCGACACTGTATTTTACA
ATTTTAACCATAATGACCGGCATGCTTTTATGCAGGACACTTATACATAT
TTGGTGGACGAGAGGAAGAAGTTGAAAATGAAGATTCTGATTTTCTCAGG
CGCTGATGACTCGGTCTGCGCGACGCAGGGGACGTTGTTTTGGGTGGGGA
ACATGGGATGGCCTACCAAGCAGGGTCAGGAGTGGACCTCTTGGGGAATT
GACGGCCAGGTTTCTGGTTTCTTGCAAGGTTACCAGAACGGGATCACGAT
CGCCACGGTGTCGGGGGCGGGGCACGAGGTACCCGCTTACAAACCTGTAG
AAGCCCTGGCCTTGTTCAAGGCCTACCTAAACGACAATATCTGGCCGGCA
GGAAACGAAAAGAAGTAAATGCCACAATCCGTCGTCATTCCGCCGGCACA
AGACAGCCATCTACAGACCCGCCATGCACGCAAAGCCGGGTCGCGTGCCA
TCCTTGTTGCCGCGGTGACCGGCATGCTGGGCATCCTCGGCGCCACGGTT
GTCGTCGTGCATCATCGCCGCCCTATGTACACTGACATGCCCAGCCGCTT
CTTGTCCAGCCGCGTCGCCGCCCAGAGGAGCACCATTGCCGAGCCAATCA
TCTCTTTAGAGAGCAATCGCCATGCGCCCGTCGCAGCCGCCGCTTCCGCC
AAGTCTCTACGGGCCTCTACAGCTGCCGAGGGCACGACAGCGGCCTCCTC
TACTTCTTTTAAGTCCACCGCGCCCTACACCGAGGTCGCTCTGGCTGATG
AGATTATCGGTTTGCCGGGCCTGACCGAAAAGTCGCTCAACTTTCGTCAG
TTCTCCGGCTACCTCAATCTGAGGGGCACAGAGAAGAACATCTTTTACTG
GTACGTTGAGGCGGAGGAGAAGCCCGACGAGGCACCCCTCGTCTTCTGGA
CCAATGGCGGCCCCGGATGTTCTGGGCTGTTCGGCTTTATGAATGAAAAC
GGGCCTTTCCGTCCGACTGCCGACGGCAAGGCTGTGCATCTCAACCCTTA
CAGCTGGAACAAGGTTGCCAACATGCTCTTTGTCGAGCAGCCGGTAACGG
TCGGTTTCAGTTACACGGATAACCCAAAGGACCTCAATTTTGGTGACAAG
CAAGCGGCGGAGGACAATTTTCAGGTTATCCAAGCTTTCCTCGAACGCTT
CCCTCACCTGCGTAATCGTGACTTGCATCTCTCAGGGGAGAGCTACGGTG
GCCACTACCTCCCTCAACTGGCCCAGTACATTGTCGACCACCCTAACAAA
GATGCTCCCATTAATTTGAAAGGTTTTCTCGTTGGAAATCCGCTGACCGA
TCCGGTGGAAAATTTAATTGGTGCAATTGAAAGCTTTTGGGGCCATTCCA
TCTTGCCGCCTGATTTGTACGCTGAATGGCTGGATAAGTGCAGGACCCAG
ACACAGAACCCCGGGATCTTGTTCGGGGATTCGTGCATGCGGCTGCAGAG
TCTGCTGTGGAGCAATGTGCAGGGGCTTAACCCGTATGCACTCGACTACC
CGGTGTGTCTGACAGCGACAAAGGCTGGCTTGGCTAACGCCCGGCAGCGT
GGCGCAATGTTCCCTCCATCCACCGAGGCTATTCTTGCTCAAGGGCGGAA
TCAGCGATATAAGCTTTTGAGTCACACGCTGCCTTCTTTTATTGGCAATC
GCTCTGGTCTTGATCTGGCGTCGATGAACAAGGAGGGGACAGTGCCTCGG
TATGAACCGTGTGAAGACGCGTTTGCTGCGTCTTACCTCAATCGAAAGGA
TGTCCAGCATGCGATTCACGCGCGGGAAGGGACCAAGTGGGCCGATTGTT
CCGACACTGTATTTTACAATTTTAACCATAATGACCGGCATGCTTTTATG
CAGGACACTTATACATATTTGGTGGACGAGAGGAAGAAGTTGAAAATGAA
GATTCTGATTTTCTCAGGCGCTGATGACTCGGTCTGCGCGACGCAGGGGA
CGTTGTTTTGGGTGGGGAACATGGGATGGCCTACCAAGCAGGGTCAGGAG
TGGACCTCTTGGGGAATTGACGGCCAGGTTTCTGGTTTCTTGCAAGGTTA
CCAGAACGGGATCACGATCGCCACGGTGTCGGGGGCGGGGCACGAGGTAC
CCGCTTACAAACCTGTAGAAGCCCTGGCCTTGTTCAAGGCCTACCTAAAC
GACAATATCTGGCCGGCAGGAAACGAAAAGAAGTAA

Synonyms

Publications