jgi.p|Nanoce1779_2|576584, mRNA_219 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576584
Unique Name	mRNA_219
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1548
Alignment location	scaffold_3:552302..553849 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576670
Track	FilteredModels2
ProteinId	576584

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:552302..553849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576584	gene_219	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576584	mRNA_219-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_219	CDS_219	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:552302..553849+
coding sequence from alignment at scaffold_3:552302..553849+

mRNA sequence

>mRNA_219 ID=mRNA_219|Name=jgi.p|Nanoce1779_2|576584|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
ACAGCGCCCACCAGCATGCGGGCCCTTTTGCTTTTGGTGGTCTCCGCGTG
CTTGGCCACCGCTTTTTTGCAGCCACACTTCTCGTCCTTCGAGGGACGCA
GCATCCACAGCCGCAGCATCAGGAGGGGAGGGTTAATCGTGGCGGCTGCA
GACGGTGTCTATGGAGAGTCATCAGAAGAGCTAGAAAAGCTGCGTTTTCT
GACTCCCGAGCTAGTTGAGGCAGTTGCGAATGAATTTGGCACTCCCACCT
ACGTGTACGACATGAGCACGCTCACCGCTAGCGCCAAGCAGGCCCTGGCG
TTTCCCAACGCGTTTGGCCTGACAGTGCGGTACGCGATGAAGGCCAGCCC
TAACGCCGCCATCCTGAAGCTATTTAATAGCCTGGGTTTGCATGTGGATG
CTTCGTCGGGCTATGAGATCAAGCGGGCCATGCGAGCTGGCGTGCCACCG
TCGCACATCAGTTTGTCGTCGCAAGAGCTGCCGTCTGATTTTGACGAGTA
CGTGGCGCAGGGCGTGCAGATCAATGCCTGCTCCATCTCACAGCTGAAGC
GTTTCGGGCAAAAGTGTCCAGGAGGGAAGGTGGGCCTACGCTTCAACCCC
GGCGTGGGCTCAGGCGGCACCGGCAAGACGAATGTGGGGGGTCCTTCGTC
TGCCTTCGGGATATGGCACGAGTTGCTCCCCGAGGTCAAGGCGGTAGTGG
CCACGCACGACCTAGAGGTGGTACGCATCCATACCCACATTGGCTCGGGC
TCTGATCCGGCCGTGTGGCAGAATGTGGCAACGTTGTCCTTGGATCTGGT
GCGGGAGTTTCCCAAGGTGATGACTCTGAATCTGGGGGGGGGCTACAAGG
TAGGTCGCATGAGCTATGAGGCTTCGACAGACTTGCTTAAGATTGGCGCG
CCCGTGCAGAAGAAGTTCGAGGACTTTGCACAAGAGACGGGCCGAAAGCT
CCATTTGGAAGTGGAGCCGGGCACATTTTTGGTGGCCAATGCCGGGGCTT
TGGTGTGTGCTATTCAGGACAAGACTACCACCAGCGCGCACACTTTCCTG
AAGTTGGACGCGGGTATGACCGAGGTCCTGCGCCCTTCCTTGTATGGGGC
GCAACACCCGTTGATTGTGATTCCCAAGGACAAGACCCGGGCTGAGCAGA
CAGCATCGTATGTGGTGGTGGGCCACTGCTGCGAGTCGGGGGATTTGCTC
ACGCCTGCGCCAGGAGAGGCCGACACGATTGCCGAGCGGAAGATGACGGT
GGCTGACATTGGGGACTTGGTGGTGGTGGAAGGCTCGGGAGCCTACTGTG
CGGGAATGAGCACCAAAAACTATAACTCCTTTCCGGAAGCTCCCGAGGTG
ATGTATGCGTCTGGTGGCATTTTCCACCTCATCCGCCGGCGGCAGACACT
GGATCAGACCCTTCAAAATGAGCTTGATTTGCCTGCCAGCGCACTTTCTT
GACAGCATTAGAGCTTGGAGAACGTGAATATGTTCTTTTGTTGTGTTCGC
CAATCTATAGCAAAGAAAATTAAATGACAAGCTACTGGCTCGGGATAC

protein sequence of jgi.p|Nanoce1779_2|576584

>mRNA_219-protein ID=mRNA_219-protein|Name=jgi.p|Nanoce1779_2|576584|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MRALLLLVVSACLATAFLQPHFSSFEGRSIHSRSIRRGGLIVAAADGVYG
ESSEELEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAF
GLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISL
SSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSG
GTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAV
WQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKK
FEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTFLKLDAG
MTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPG
EADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASG
GIFHLIRRRQTLDQTLQNELDLPASALS*

mRNA from alignment at scaffold_3:552302..553849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_219 ID=mRNA_219|Name=jgi.p|Nanoce1779_2|576584|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at scaffold_3:552302..553849+ (Nannochloropsis oceanica)
ACAGCGCCCACCAGCATGCGGGCCCTTTTGCTTTTGGTGGTCTCCGCGTG
CTTGGCCACCGCTTTTTTGCAGCCACACTTCTCGTCCTTCGAGGGACGCA
GCATCCACAGCCGCAGCATCAGGAGGGGAGGGTTAATCGTGGCGGCTGCA
GACGGTGTCTATGGAGAGTCATCAGAAGAGCTAGAAAAGCTGCGTTTTCT
GACTCCCGAGCTAGTTGAGGCAGTTGCGAATGAATTTGGCACTCCCACCT
ACGTGTACGACATGAGCACGCTCACCGCTAGCGCCAAGCAGGCCCTGGCG
TTTCCCAACGCGTTTGGCCTGACAGTGCGGTACGCGATGAAGGCCAGCCC
TAACGCCGCCATCCTGAAGCTATTTAATAGCCTGGGTTTGCATGTGGATG
CTTCGTCGGGCTATGAGATCAAGCGGGCCATGCGAGCTGGCGTGCCACCG
TCGCACATCAGTTTGTCGTCGCAAGAGCTGCCGTCTGATTTTGACGAGTA
CGTGGCGCAGGGCGTGCAGATCAATGCCTGCTCCATCTCACAGCTGAAGC
GTTTCGGGCAAAAGTGTCCAGGAGGGAAGGTGGGCCTACGCTTCAACCCC
GGCGTGGGCTCAGGCGGCACCGGCAAGACGAATGTGGGGGGTCCTTCGTC
TGCCTTCGGGATATGGCACGAGTTGCTCCCCGAGGTCAAGGCGGTAGTGG
CCACGCACGACCTAGAGGTGGTACGCATCCATACCCACATTGGCTCGGGC
TCTGATCCGGCCGTGTGGCAGAATGTGGCAACGTTGTCCTTGGATCTGGT
GCGGGAGTTTCCCAAGGTGATGACTCTGAATCTGGGGGGGGGCTACAAGG
TAGGTCGCATGAGCTATGAGGCTTCGACAGACTTGCTTAAGATTGGCGCG
CCCGTGCAGAAGAAGTTCGAGGACTTTGCACAAGAGACGGGCCGAAAGCT
CCATTTGGAAGTGGAGCCGGGCACATTTTTGGTGGCCAATGCCGGGGCTT
TGGTGTGTGCTATTCAGGACAAGACTACCACCAGCGCGCACACTTTCCTG
AAGTTGGACGCGGGTATGACCGAGGTCCTGCGCCCTTCCTTGTATGGGGC
GCAACACCCGTTGATTGTGATTCCCAAGGACAAGACCCGGGCTGAGCAGA
CAGCATCGTATGTGGTGGTGGGCCACTGCTGCGAGTCGGGGGATTTGCTC
ACGCCTGCGCCAGGAGAGGCCGACACGATTGCCGAGCGGAAGATGACGGT
GGCTGACATTGGGGACTTGGTGGTGGTGGAAGGCTCGGGAGCCTACTGTG
CGGGAATGAGCACCAAAAACTATAACTCCTTTCCGGAAGCTCCCGAGGTG
ATGTATGCGTCTGGTGGCATTTTCCACCTCATCCGCCGGCGGCAGACACT
GGATCAGACCCTTCAAAATGAGCTTGATTTGCCTGCCAGCGCACTTTCTT
GACAGCATTAGAGCTTGGAGAACGTGAATATGTTCTTTTGTTGTGTTCGC
CAATCTATAGCAAAGAAAATTAAATGACAAGCTACTGGCTCGGGATAC

Coding sequence (CDS) from alignment at scaffold_3:552302..553849+

>mRNA_219 ID=mRNA_219|Name=jgi.p|Nanoce1779_2|576584|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at scaffold_3:552302..553849+ (Nannochloropsis oceanica)
ATGCGGGCCCTTTTGCTTTTGGTGGTCTCCGCGTGCTTGGCCACCGCTTT
TTTGCAGCCACACTTCTCGTCCTTCGAGGGACGCAGCATCCACAGCCGCA
GCATCAGGAGGGGAGGGTTAATCGTGGCGGCTGCAGACGGTGTCTATGGA
GAGTCATCAGAAGAGCTAGAAAAGCTGCGTTTTCTGACTCCCGAGCTAGT
TGAGGCAGTTGCGAATGAATTTGGCACTCCCACCTACGTGTACGACATGA
GCACGCTCACCGCTAGCGCCAAGCAGGCCCTGGCGTTTCCCAACGCGTTT
GGCCTGACAGTGCGGTACGCGATGAAGGCCAGCCCTAACGCCGCCATCCT
GAAGCTATTTAATAGCCTGGGTTTGCATGTGGATGCTTCGTCGGGCTATG
AGATCAAGCGGGCCATGCGAGCTGGCGTGCCACCGTCGCACATCAGTTTG
TCGTCGCAAGAGCTGCCGTCTGATTTTGACGAGTACGTGGCGCAGGGCGT
GCAGATCAATGCCTGCTCCATCTCACAGCTGAAGCGTTTCGGGCAAAAGT
GTCCAGGAGGGAAGGTGGGCCTACGCTTCAACCCCGGCGTGGGCTCAGGC
GGCACCGGCAAGACGAATGTGGGGGGTCCTTCGTCTGCCTTCGGGATATG
GCACGAGTTGCTCCCCGAGGTCAAGGCGGTAGTGGCCACGCACGACCTAG
AGGTGGTACGCATCCATACCCACATTGGCTCGGGCTCTGATCCGGCCGTG
TGGCAGAATGTGGCAACGTTGTCCTTGGATCTGGTGCGGGAGTTTCCCAA
GGTGATGACTCTGAATCTGGGGGGGGGCTACAAGGTAGGTCGCATGAGCT
ATGAGGCTTCGACAGACTTGCTTAAGATTGGCGCGCCCGTGCAGAAGAAG
TTCGAGGACTTTGCACAAGAGACGGGCCGAAAGCTCCATTTGGAAGTGGA
GCCGGGCACATTTTTGGTGGCCAATGCCGGGGCTTTGGTGTGTGCTATTC
AGGACAAGACTACCACCAGCGCGCACACTTTCCTGAAGTTGGACGCGGGT
ATGACCGAGGTCCTGCGCCCTTCCTTGTATGGGGCGCAACACCCGTTGAT
TGTGATTCCCAAGGACAAGACCCGGGCTGAGCAGACAGCATCGTATGTGG
TGGTGGGCCACTGCTGCGAGTCGGGGGATTTGCTCACGCCTGCGCCAGGA
GAGGCCGACACGATTGCCGAGCGGAAGATGACGGTGGCTGACATTGGGGA
CTTGGTGGTGGTGGAAGGCTCGGGAGCCTACTGTGCGGGAATGAGCACCA
AAAACTATAACTCCTTTCCGGAAGCTCCCGAGGTGATGTATGCGTCTGGT
GGCATTTTCCACCTCATCCGCCGGCGGCAGACACTGGATCAGACCCTTCA
AAATGAGCTTGATTTGCCTGCCAGCGCACTTTCTTGA

Synonyms

Publications