Properties
| Property Name | Value |
|---|
| TranscriptId | 296179 |
| Track | FilteredModels2 |
| ProteinId | 296093 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:998154..1000581 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2188 ID=mRNA_2188|Name=jgi.p|Nanoce1779_2|296093|organism=Nannochloropsis oceanica|type=mRNA|length=2254bp
ACCCTTCTTTATCCAACTCCCTACATAATTCACAGGCCTGTCCAATCTAA
CGCGCCTCGGCCCAGGTGATTTGACATCCACGTCCCCAGCTGCCGCGACG
AACGCAGAAGCACAGAAGCCTCTGAACGTTCTTCGCTTCTGCGCTCTTCC
TTCTTTCCATTCTGTGCCCAAGAGCCAAGCCAAGCGTCGCCTCACCCAGC
TTAATACACAATCCTCGCCTCCACGAGCACAGTACACATTTTACAACACT
GCTGGAGCATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGT
CCTCCGGCCCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCAC
CAGTAACGAGACCAAGGCCACCTCCTCACCACCCGAATGCGGCTTGCCCA
GTCCCCCGTCCGCCTGTGCGATCCCACCTGTGGCCGTTCCCCCCTCTGGC
TTGCTCGCAGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGAC
CGACCTGCCTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACG
AAGGCGGCCCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCT
CCTCCACACTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCA
GCATCATCCCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGC
ACGGTGGCTTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTAC
CTCGGCCCTCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCC
CCTCGGAGTTCCTTCCCTCCATCATCACTACCAGCAGCACCACCAGCAGC
AGCACCAGCATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGG
GCATCCTTGCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGG
GGGGGCGCTGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGT
TTCTGGTGAAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATC
TGTTGGGACTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGGAA
TGAGGTCTTGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGC
GGCAGTTGAATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATG
AGTGCATGCACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAG
CTTGTTGAAGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGG
GTGGAATGGAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGT
GAGGGGGGAGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGG
GAAAGGGGGGGATACAAGGTTCCATCCGATGATGGGCTTGGCGTCGGGTG
GGATGGCGCCTCCCTCGTTGCCTCCCCTGGATATGCTGCGGGCGCAGCCG
ATGGGAGGAGCAGGGGGAGGGGCGGGGGGGGGGAAGGATGACAGGCTGTT
GTTTTTGTATCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGA
AGAAGGGTGGAAAGAAGGCGGACGATGATGAGGAGGAGGATGACGAAGAT
CCAGAGGTGGAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGG
AGAGGGGGAGGAAGATCGGACTAGTAGCAGTGTGGGAATGGAGTCGGGGG
ACGAGGAGACAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAA
GCGAAAAAGGGAGGGGAGGAGGAGGAGGATGAGAAGCCCAATCAGCGACA
GCAGCAGCCTCAGTTGCCCCCCGCAGTGACGGCTTAGTACACAAATCTGA
AGAGAGAGATGGAACAAGAGGGAGAAGGGATAGATGAGGGGAGGCGCTTG
GCGCGTCGTGGATGCCCTTTCCGTCAAGTCCTCATGCACTTGTGTTTCTC
GGATATGTATCGATATTCTGGTAATACTCTACTACGATTCCATCCTCTGG
TATTGATTGATAAATTTATGGGGTTCTGGGCATTTTGACTGTGGGAGGGA
GGGGGTGCTTGAGGGAGGGAGGGGGAGGTTTCTTCGCATCTGTTGATGAT
GTCAGTTGTGTTGGTGTCAACACTGCCATGTGATTAAGAGTTCCCCGAGA
TAGAAAGTAAGCAGGCGAGAGCGATGGATGCGAGAGGTTAAAGAGGTATA
TGCA back to topprotein sequence of jgi.p|Nanoce1779_2|296093 >mRNA_2188-protein ID=mRNA_2188-protein|Name=jgi.p|Nanoce1779_2|296093|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MAAVVHPAADHPTGPPAPLSSTSSSPSSPPTSNETKATSSPPECGLPSPP
SACAIPPVAVPPSGLLAEMSSHPPPQVEPLTDLPHPPPPSGLGPHSYEGG
PPPHSYAHHHLPPPPPHFHPMGQPVDPNAFQHHPHPYFDVNAHHHGQHGG
FPPPPHHHPFSPKYLGPPPPGGLPPPPPGLPLGVPSLHHHYQQHHQQQHQ
HQYNMAAHHQQLPGASLLIGGGGGAGGGAGGGALQAQLLAKKSKKPEFLV
KLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQL
NYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRKTNTSSRHGGGGM
EDYYDGEEDEEEEGEGGGNDHEHQQMRQVLGKGGDTRFHPMMGLASGGMA
PPSLPPLDMLRAQPMGGAGGGAGGGKDDRLLFLYQLAAAEGKGKGGGKKG
GKKADDDEEEDDEDPEVEDEEADEEEGERGGEGEEDRTSSSVGMESGDEE
TEQRRRIRMGRKAEAKKGGEEEEDEKPNQRQQQPQLPPAVTA* back to topmRNA from alignment at scaffold_4:998154..1000581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2188 ID=mRNA_2188|Name=jgi.p|Nanoce1779_2|296093|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp|location=Sequence derived from alignment at scaffold_4:998154..1000581- (Nannochloropsis oceanica)
ACCCTTCTTTATCCAACTCCCTACATAATTCACAGGCCTGTCCAATCTAA
CGCGCCTCGGCCCAGGTGATTTGACATCCACGTCCCCAGCTGCCGCGACG
AACGCAGAAGCACAGAAGCCTCTGAACGTTCTTCGCTTCTGCGCTCTTCC
TTCTTTCCATTCTGTGCCCAAGAGCCAAGCCAAGCGTCGCCTCACCCAGC
TTAATACACAATCCTCGCCTCCACGAGCACAGTACACATTTTACAACACT
GCTGGAGCATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGT
CCTCCGGCCCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCAC
CAGTAACGAGACCAAGGCCACCTCCTCACCACCCGAATGCGGCTTGCCCA
GTCCCCCGTCCGCCTGTGCGATCCCACCTGTGGCCGTTCCCCCCTCTGGC
TTGCTCGCAGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGAC
CGACCTGCCTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACG
AAGGCGGCCCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCT
CCTCCACACTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCA
GCATCATCCCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGC
ACGGTGGCTTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTAC
CTCGGCCCTCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCC
CCTCGGAGTTCCTTCCCTCCATCATCACTACCAGCAGCACCACCAGCAGC
AGCACCAGCATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGG
GCATCCTTGCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGG
GGGGGCGCTGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGT
TTCTGGTGAAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATC
TGTTGGGACTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGGAA
TGAGGTCTTGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGC
GGCAGTTGAATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATG
AGTGCATGCACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAG
CTTGTTGAAGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGG
GTGGAATGGAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGT
GAGGGGGGAGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGG
GAAAGGGGGGGATACAAGGTTCCATCCGATGATGGGCTTGGCGTCGGGTG
GGATGGCGCCTCCCTCGTTGCCTCCCCTGGATATGCTGCGGGCGCAGCCG
ATGGGAGGAGCAGGGGGAGGGGCGGGGGGGGGGAAGGATGACAGGCTGTT
GTTTTTGTATCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGA
AGAAGGGTGGAAAGAAGGCGGACGATGATGAGGAGGAGGATGACGAAGAT
CCAGAGGTGGAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGG
AGAGGGGGAGGAAGATCGGACTAGTAGCAGTGTGGGAATGGAGTCGGGGG
ACGAGGAGACAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAA
GCGAAAAAGGGAGGGGCGAAGGAGGAGATGAAGTTTCAAGGGAAGAAGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGCGGGGGGAGGAGGGGG
GAATTAAGAGGAAGTTTGAAGGAGAAGCGGGAGAGGTCGTAACTAAGGTG
AAAAAGCACGAGGCTGATGAGACAGAGGGGGAGGCAGAGGAGGAGGAGGA
GGATGAGAAGCCCAATCAGCGACAGCAGCAGCCTCAGTTGCCCCCCGCAG
TGACGGCTTAGTACACAAATCTGAAGAGAGAGATGGAACAAGAGGGAGAA
GGGATAGATGAGGGGAGGCGCTTGGCGCGTCGTGGATGCCCTTTCCGTCA
AGTCCTCATGCACTTGTGTTTCTCGGATATGTATCGATATTCTGGTAATA
CTCTACTACGATTCCATCCTCTGGTATTGATTGATAAATTTATGGGGTTC
TGGGCATTTTGACTGTGGGAGGGAGGGGGTGCTTGAGGGAGGGAGGGGGA
GGTTTCTTCGCATCTGTTGATGATGTCAGTTGTGTTGGTGTCAACACTGC
CATGTGATTAAGAGTTCCCCGAGATAGAAAGTAAGCAGGCGAGAGCGATG
GATGCGAGAGGTTAAAGAGGTATATGCA back to topCoding sequence (CDS) from alignment at scaffold_4:998154..1000581- >mRNA_2188 ID=mRNA_2188|Name=jgi.p|Nanoce1779_2|296093|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_4:998154..1000581- (Nannochloropsis oceanica)
GAGGAGGAGGAGGATGAGAAGCCCAATCAGCGACAGCAGCAGCCTCAGTT
GCCCCCCGCAGTGACGGCTTAGATGGCCGCTGTTGTGCACCCTGCTGCTG
ACCACCCCACGGGTCCTCCGGCCCCCCTCTCCTCCACCTCCTCCTCCCCG
TCTTCACCTCCCACCAGTAACGAGACCAAGGCCACCTCCTCACCACCCGA
ATGCGGCTTGCCCAGTCCCCCGTCCGCCTGTGCGATCCCACCTGTGGCCG
TTCCCCCCTCTGGCTTGCTCGCAGAGATGAGCTCGCACCCGCCCCCCCAA
GTAGAGCCCTTGACCGACCTGCCTCATCCTCCTCCTCCTTCGGGCCTCGG
CCCTCACTCCTACGAAGGCGGCCCCCCTCCTCACTCCTATGCACATCACC
ATCTACCCCCGCCTCCTCCACACTTCCACCCCATGGGCCAGCCGGTTGAC
CCAAACGCTTTCCAGCATCATCCCCACCCATACTTCGACGTCAATGCGCA
CCATCACGGGCAGCACGGTGGCTTCCCACCTCCTCCTCACCACCATCCTT
TCTCTCCAAAGTACCTCGGCCCTCCTCCTCCTGGTGGACTCCCCCCCCCT
CCTCCCGGCTTGCCCCTCGGAGTTCCTTCCCTCCATCATCACTACCAGCA
GCACCACCAGCAGCAGCACCAGCATCAGTACAACATGGCAGCGCACCACC
AGCAGCTTCCGGGGGCATCCTTGCTCATCGGTGGGGGAGGAGGCGCTGGA
GGAGGCGCTGGAGGGGGGGCGCTGCAAGCGCAGCTGTTGGCGAAGAAAAG
TAAAAAGCCCGAGTTTCTGGTGAAGCTTTACCGGATGTTGCAATACGAGG
ACCCCACGGTGATCTGTTGGGACTCGGGCAGGATCCACGTGCACGACCCC
AAGGCGTTGGGGAATGAGGTCTTGCACAAATACTTCCGGCATTCCAAGTA
CAGCTCGTTTCAGCGGCAGTTGAATTACTTCGGGTTTCGGAAAACGCAGG
GGAAGGGGAAGATGAGTGCATGCACCTACACGAATTTTGACCTGTCCAAC
TCGAGCTTGAAAAGCTTGTTGAAGATCAAGCGGAAGACGAACACGAGCTC
CAGGCATGGAGGGGGTGGAATGGAGGATTACTACGACGGGGAGGAGGACG
AGGAGGAGGAGGGTGAGGGGGGAGGCAATGACCATGAGCACCAGCAGATG
AGGCAAGTGCTGGGGAAAGGGGGGGATACAAGGTTCCATCCGATGATGGG
CTTGGCGTCGGGTGGGATGGCGCCTCCCTCGTTGCCTCCCCTGGATATGC
TGCGGGCGCAGCCGATGGGAGGAGCAGGGGGAGGGGCGGGGGGGGGGAAG
GATGACAGGCTGTTGTTTTTGTATCAGCTGGCGGCAGCGGAGGGGAAGGG
GAAAGGGGGAGGGAAGAAGGGTGGAAAGAAGGCGGACGATGATGAGGAGG
AGGATGACGAAGATCCAGAGGTGGAGGACGAAGAGGCGGATGAAGAGGAG
GGGGAGCGAGGGGGAGAGGGGGAGGAAGATCGGACTAGTAGCAGTGTGGG
AATGGAGTCGGGGGACGAGGAGACAGAGCAGAGGAGGAGAATCAGGATGG
GGAGGAAGGCGGAAGCGAAAAAGGGAGGGGAGGAGGAGGAGGATGAGAAG
CCCAATCAGCGACAGCAGCAGCCTCAGTTGCCCCCCGCAGTGACGGCTTA
GATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGTCCTCCGG
CCCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCACCAGTAAC
GAGACCAAGGCCACCTCCTCACCACCCGAATGCGGCTTGCCCAGTCCCCC
GTCCGCCTGTGCGATCCCACCTGTGGCCGTTCCCCCCTCTGGCTTGCTCG
CAGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGACCGACCTG
CCTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACGAAGGCGG
CCCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCTCCTCCAC
ACTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCAGCATCAT
CCCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGCACGGTGG
CTTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTACCTCGGCC
CTCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCCCCTCGGA
GTTCCTTCCCTCCATCATCACTACCAGCAGCACCACCAGCAGCAGCACCA
GCATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGGGCATCCT
TGCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGGGGGGGCG
CTGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGTTTCTGGT
GAAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATCTGTTGGG
ACTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGGAATGAGGTC
TTGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGCGGCAGTT
GAATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATGAGTGCAT
GCACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAGCTTGTTG
AAGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGGGTGGAAT
GGAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGTGAGGGGG
GAGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGGGAAAGGG
GGGGATACAAGGTTCCATCCGATGATGGGCTTGGCGTCGGGTGGGATGGC
GCCTCCCTCGTTGCCTCCCCTGGATATGCTGCGGGCGCAGCCGATGGGAG
GAGCAGGGGGAGGGGCGGGGGGGGGGAAGGATGACAGGCTGTTGTTTTTG
TATCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGAAGAAGGG
TGGAAAGAAGGCGGACGATGATGAGGAGGAGGATGACGAAGATCCAGAGG
TGGAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGGAGAGGGG
GAGGAAGATCGGACTAGTAGCAGTGTGGGAATGGAGTCGGGGGACGAGGA
GACAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAAGCGAAAA
AGGGAGGG back to top
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