jgi.p|Nanoce1779_2|579399, mRNA_2187 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579399
Unique Name	mRNA_2187
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1665
Alignment location	scaffold_4:997161..998825 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579485
Track	FilteredModels2
ProteinId	579399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:997161..998825 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579399	gene_2187	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579399	mRNA_2187-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2187	CDS_2187	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:997161..998825+
coding sequence from alignment at scaffold_4:997161..998825+

mRNA sequence

>mRNA_2187 ID=mRNA_2187|Name=jgi.p|Nanoce1779_2|579399|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
CCCTCCTCCCTCCCTCTCATTTCGCAGTACATGCTGCTTGTCACTGTCTT
TCCTCAGTCATCAACGGGCACAAAACAAAAGGAAAAGGCGCGCGAACGGA
CGGGAGTGGTTTGTTCAAATTGAATGTCCTCCTCCTGTTTAAGAGTCGTA
TATTTTTTCTTTATTCATCGTCGTCGTCGTCTTCTTCTTATTCATCTCCT
CATCATCTAGTTCATCTTTTTCGCGTGCATCACATTTTCCTCTTTTCTGT
GCGTCTTGATCTCCTTCCCATGGATCATTTTAACTCACTCTCTTTCTCCT
TCTCTGTCCCGGGAACTGGCGTTCTTCCTCTTTCTTTCCTGTCGTGGCGT
CATCCTAGTGGCGTCAGTCCTCGTTGTCACCCCTTGGCTGACAAGGGGAC
CTACGCGTACTATTCCACCTTCGTGTCTTGTCTCTCGCTTCCTTCCTTCT
GCCAGATGGTTTTACCCTTCTTGCAAAGCAGTCGATTTTCACTTAAATCT
TGTTTGAATCGCTTTCCTCCGGCCTGTCTTTCTCTCCCTGACTCGGTCTT
TCTCGTCCTATGTCTCCTCCTCTTTCTCTTTTTCCCTCTGAAACTCCCCT
CTTTTCTCACATGGATTTGGTCGTGATTCATCCTCCTTGCCTTGGATTCT
TTTTTGTTATTCGTGATGTCTTTAAATTCTTGATCTTCTCCTTTATCTTC
TGCTCAAATATTTCTCTTCGTTGAAAGATTTCATTATTTCCAACCACCCT
TTTAGCTCCCACTTCTTTCCTCCCTCCCTCTCATTCCTCCCTCCCTCACC
TCCGCTATCCTTGCAAGATCATAGAGGGGGGCGCGTGCCGGAGACCGACC
AAGAAACACACGCGGACATTTCTTGCTCTCTGACTCCCTACCCCTCCCCT
TCCTCTTCTCCTTCTTCCTCTGTCATCGCACACTCAATCTCACCTTCACT
CTCACTCACACACGTATATATCACATATATATATATATATATATGCATAT
ACCTCTTTAACCTCTCGCATCCATCGCTCTCGCCTGCTTACTTTCTATCT
CGGGGAACTCTTAATCACATGGCAGTGTTGACACCAACACAACTGACATC
ATCAACAGATGCGAAGAAACCTCCCCCTCCCTCCCTCAAGCACCCCCTCC
CTCCCACAGTCAAAATGCCCAGAACCCCATAAATTTATCAATCAATACCA
GAGGATGGAATCGTAGTAGAGTATTACCAGAATATCGATACATATCCGAG
AAACACAAGTGCATGAGGACTTGACGGAAAGGGCATCCACGACGCGCCAA
GCGCCTCCCCTCATCTATCCCTTCTCCCTCTTGTTCCATCTCTCTCTTCA
GATTTGTGTACTAAGCCGTCACTGCGGGGGGCAACTGAGGCTGCTGCTGT
CGCTGATTGGGCTTCTCATCCTCCTCCTCCTCCTCTGCCTCCCCCTCTGT
CTCATCAGCCTCGTGCTTTTTCACCTTAGTTACGACCTCTCCCGCTTCTC
CTTCAAACTTCCTCTTAATTCCCCCCTCCTCCCCCCGCTCCACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCCTTGAAACTTCATCTCCTC
CTTCGCCCCTCCCTTTTTCGCTTCCGCCTTCCTCCCCATCCTGATTCTCC
TCCTCTGCTCTGTCT

protein sequence of jgi.p|Nanoce1779_2|579399

>mRNA_2187-protein ID=mRNA_2187-protein|Name=jgi.p|Nanoce1779_2|579399|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MDHFNSLSFSFSVPGTGVLPLSFLSWRHPSGVSPRCHPLADKGTYAYYST
FVSCLSLPSFCQMVLPFLQSSRFSLKSCLNRFPPACLSLPDSVFLVLCLL
LFLFFPLKLPSFLTWIWS*

mRNA from alignment at scaffold_4:997161..998825+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2187 ID=mRNA_2187|Name=jgi.p|Nanoce1779_2|579399|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at scaffold_4:997161..998825+ (Nannochloropsis oceanica)
CCCTCCTCCCTCCCTCTCATTTCGCAGTACATGCTGCTTGTCACTGTCTT
TCCTCAGTCATCAACGGGCACAAAACAAAAGGAAAAGGCGCGCGAACGGA
CGGGAGTGGTTTGTTCAAATTGAATGTCCTCCTCCTGTTTAAGAGTCGTA
TATTTTTTCTTTATTCATCGTCGTCGTCGTCTTCTTCTTATTCATCTCCT
CATCATCTAGTTCATCTTTTTCGCGTGCATCACATTTTCCTCTTTTCTGT
GCGTCTTGATCTCCTTCCCATGGATCATTTTAACTCACTCTCTTTCTCCT
TCTCTGTCCCGGGAACTGGCGTTCTTCCTCTTTCTTTCCTGTCGTGGCGT
CATCCTAGTGGCGTCAGTCCTCGTTGTCACCCCTTGGCTGACAAGGGGAC
CTACGCGTACTATTCCACCTTCGTGTCTTGTCTCTCGCTTCCTTCCTTCT
GCCAGATGGTTTTACCCTTCTTGCAAAGCAGTCGATTTTCACTTAAATCT
TGTTTGAATCGCTTTCCTCCGGCCTGTCTTTCTCTCCCTGACTCGGTCTT
TCTCGTCCTATGTCTCCTCCTCTTTCTCTTTTTCCCTCTGAAACTCCCCT
CTTTTCTCACATGGATTTGGTCGTGATTCATCCTCCTTGCCTTGGATTCT
TTTTTGTTATTCGTGATGTCTTTAAATTCTTGATCTTCTCCTTTATCTTC
TGCTCAAATATTTCTCTTCGTTGAAAGATTTCATTATTTCCAACCACCCT
TTTAGCTCCCACTTCTTTCCTCCCTCCCTCTCATTCCTCCCTCCCTCACC
TCCGCTATCCTTGCAAGATCATAGAGGGGGGCGCGTGCCGGAGACCGACC
AAGAAACACACGCGGACATTTCTTGCTCTCTGACTCCCTACCCCTCCCCT
TCCTCTTCTCCTTCTTCCTCTGTCATCGCACACTCAATCTCACCTTCACT
CTCACTCACACACGTATATATCACATATATATATATATATATATGCATAT
ACCTCTTTAACCTCTCGCATCCATCGCTCTCGCCTGCTTACTTTCTATCT
CGGGGAACTCTTAATCACATGGCAGTGTTGACACCAACACAACTGACATC
ATCAACAGATGCGAAGAAACCTCCCCCTCCCTCCCTCAAGCACCCCCTCC
CTCCCACAGTCAAAATGCCCAGAACCCCATAAATTTATCAATCAATACCA
GAGGATGGAATCGTAGTAGAGTATTACCAGAATATCGATACATATCCGAG
AAACACAAGTGCATGAGGACTTGACGGAAAGGGCATCCACGACGCGCCAA
GCGCCTCCCCTCATCTATCCCTTCTCCCTCTTGTTCCATCTCTCTCTTCA
GATTTGTGTACTAAGCCGTCACTGCGGGGGGCAACTGAGGCTGCTGCTGT
CGCTGATTGGGCTTCTCATCCTCCTCCTCCTCCTCTGCCTCCCCCTCTGT
CTCATCAGCCTCGTGCTTTTTCACCTTAGTTACGACCTCTCCCGCTTCTC
CTTCAAACTTCCTCTTAATTCCCCCCTCCTCCCCCCGCTCCACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTTCTTCTTCCCTTGAAACTTCATCTCCTC
CTTCGCCCCTCCCTTTTTCGCTTCCGCCTTCCTCCCCATCCTGATTCTCC
TCCTCTGCTCTGTCT

Coding sequence (CDS) from alignment at scaffold_4:997161..998825+

>mRNA_2187 ID=mRNA_2187|Name=jgi.p|Nanoce1779_2|579399|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_4:997161..998825+ (Nannochloropsis oceanica)
ATGGATCATTTTAACTCACTCTCTTTCTCCTTCTCTGTCCCGGGAACTGG
CGTTCTTCCTCTTTCTTTCCTGTCGTGGCGTCATCCTAGTGGCGTCAGTC
CTCGTTGTCACCCCTTGGCTGACAAGGGGACCTACGCGTACTATTCCACC
TTCGTGTCTTGTCTCTCGCTTCCTTCCTTCTGCCAGATGGTTTTACCCTT
CTTGCAAAGCAGTCGATTTTCACTTAAATCTTGTTTGAATCGCTTTCCTC
CGGCCTGTCTTTCTCTCCCTGACTCGGTCTTTCTCGTCCTATGTCTCCTC
CTCTTTCTCTTTTTCCCTCTGAAACTCCCCTCTTTTCTCACATGGATTTG
GTCGTGA

Synonyms

Publications